Wall clock time and date at job start Tue Mar 31 2020 18:34:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31002 * 1 3 3 C 1.51578 * 135.78159 * 2 1 4 4 C 1.53840 * 86.75613 * 154.83976 * 3 2 1 5 5 C 1.52991 * 113.66266 * 270.21948 * 4 3 2 6 6 C 1.50706 * 113.65570 * 139.26811 * 4 3 2 7 7 O 1.21278 * 119.99926 * 1.66713 * 6 4 3 8 8 N 1.34771 * 119.99931 * 181.66694 * 6 4 3 9 9 C 1.47425 * 125.64767 * 359.69212 * 8 6 4 10 10 C 1.54910 * 104.83231 * 156.13676 * 9 8 6 11 11 H 1.09002 * 111.00267 * 155.08153 * 10 9 8 12 12 C 1.52993 * 111.03879 * 278.91818 * 10 9 8 13 13 C 1.55160 * 101.58122 * 37.00939 * 10 9 8 14 14 H 1.09003 * 110.87062 * 82.93498 * 13 10 9 15 15 N 1.46897 * 110.71782 * 206.13435 * 13 10 9 16 16 C 1.46908 * 110.99919 * 199.97728 * 15 13 10 17 17 C 1.50700 * 109.47101 * 180.02562 * 16 15 13 18 18 O 1.21285 * 120.00114 * 359.97438 * 17 16 15 19 19 N 1.34780 * 119.99697 * 179.97438 * 17 16 15 20 20 C 1.37099 * 119.99546 * 179.97438 * 19 17 16 21 21 H 1.07995 * 119.99995 * 0.02562 * 20 19 17 22 22 C 1.38949 * 119.99564 * 179.97438 * 20 19 17 23 23 N 1.31412 * 120.00255 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99745 * 180.02562 * 22 20 19 25 25 H 1.48503 * 109.46993 * 60.00642 * 24 22 20 26 26 H 1.48502 * 109.46924 * 180.02562 * 24 22 20 27 27 H 1.48495 * 109.47160 * 300.00038 * 24 22 20 28 28 C 1.47026 * 125.65100 * 180.02562 * 8 6 4 29 29 C 1.51775 * 135.74774 * 179.88246 * 2 1 3 30 30 H 1.08000 * 120.00203 * 0.02562 * 1 2 3 31 31 H 1.08001 * 119.99716 * 179.97438 * 1 2 3 32 32 H 1.08999 * 113.66884 * 40.37419 * 3 2 1 33 33 H 1.09000 * 113.66723 * 269.30550 * 3 2 1 34 34 H 1.09001 * 109.46646 * 298.33823 * 5 4 3 35 35 H 1.09007 * 109.47144 * 58.33013 * 5 4 3 36 36 H 1.08991 * 109.47499 * 178.33732 * 5 4 3 37 37 H 1.09001 * 110.36478 * 274.97629 * 9 8 6 38 38 H 1.08998 * 110.36859 * 37.30006 * 9 8 6 39 39 H 1.09000 * 109.47334 * 172.21234 * 12 10 9 40 40 H 1.08996 * 109.47270 * 292.21385 * 12 10 9 41 41 H 1.09003 * 109.47286 * 52.21434 * 12 10 9 42 42 H 1.00898 * 111.00072 * 323.92885 * 15 13 10 43 43 H 1.09001 * 109.46779 * 300.00033 * 16 15 13 44 44 H 1.08997 * 109.47112 * 60.00043 * 16 15 13 45 45 H 0.96996 * 119.99882 * 0.02562 * 19 17 16 46 46 H 0.96996 * 120.00124 * 179.97438 * 23 22 20 47 47 H 1.09004 * 109.87531 * 300.21113 * 28 8 6 48 48 H 1.09000 * 109.87938 * 61.37366 * 28 8 6 49 49 H 1.09000 * 113.66462 * 90.72772 * 29 2 1 50 50 H 1.08996 * 113.72461 * 319.59933 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.3964 1.0571 0.0000 4 6 3.3035 0.0000 0.6530 5 6 3.2461 0.0016 2.1818 6 6 4.7130 0.0000 0.1195 7 8 5.0425 0.8078 -0.7230 8 7 5.6073 -0.8976 0.5787 9 6 5.3443 -1.9264 1.6014 10 6 6.3999 -3.0286 1.3356 11 1 6.6013 -3.6028 2.2400 12 6 5.9598 -3.9464 0.1934 13 6 7.6356 -2.1843 0.9262 14 1 8.1682 -1.8235 1.8061 15 7 8.5324 -2.9617 0.0606 16 6 9.8843 -2.3868 0.0515 17 6 10.7736 -3.2087 -0.8455 18 8 10.3256 -4.1781 -1.4203 19 7 12.0669 -2.8663 -1.0090 20 6 12.8761 -3.6143 -1.8246 21 1 12.4772 -4.4775 -2.3364 22 6 14.2093 -3.2610 -1.9936 23 7 14.6946 -2.2103 -1.3712 24 14 15.3117 -4.2798 -3.1055 25 1 14.7621 -4.2764 -4.4851 26 1 16.6781 -3.6983 -3.1151 27 1 15.3715 -5.6747 -2.5998 28 6 7.0086 -1.0086 0.1478 29 6 2.3971 -1.0591 0.0022 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 -0.0004 32 1 2.1796 1.9073 0.6467 33 1 2.7184 1.3536 -0.9983 34 1 3.5889 0.9658 2.5573 35 1 2.2201 -0.1710 2.5071 36 1 3.8882 -0.7888 2.5704 37 1 5.4739 -1.5100 2.6004 38 1 4.3381 -2.3288 1.4848 39 1 6.7752 -4.6224 -0.0642 40 1 5.0922 -4.5267 0.5073 41 1 5.6987 -3.3441 -0.6767 42 1 8.5536 -3.9311 0.3395 43 1 9.8411 -1.3628 -0.3196 44 1 10.2870 -2.3895 1.0644 45 1 12.4253 -2.0912 -0.5490 46 1 15.6254 -1.9640 -1.4889 47 1 7.0523 -1.2078 -0.9230 48 1 7.5412 -0.0857 0.3774 49 1 2.7194 -1.3574 -0.9955 50 1 2.1810 -1.9081 0.6506 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001724939196.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:34:51 Heat of formation + Delta-G solvation = -17.104551 kcal Electronic energy + Delta-G solvation = -29216.412026 eV Core-core repulsion = 25245.049677 eV Total energy + Delta-G solvation = -3971.362349 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.14004 -39.33991 -38.16282 -37.45617 -34.84015 -33.82518 -32.30463 -31.79530 -31.20442 -29.07622 -28.02584 -26.96173 -26.44239 -26.15096 -24.43957 -23.43472 -21.66875 -19.87114 -19.43215 -19.05818 -18.12216 -17.89135 -17.04858 -16.64441 -15.97991 -15.82776 -15.46591 -15.19373 -14.94187 -14.69813 -14.47649 -14.16374 -13.84710 -13.81867 -13.68938 -13.59998 -13.27023 -12.82885 -12.61004 -12.52362 -12.38085 -12.25631 -12.21721 -11.95151 -11.78635 -11.61276 -11.52889 -11.32201 -11.07560 -10.95289 -10.93691 -10.73294 -10.54960 -10.44364 -10.21580 -9.83215 -9.50409 -9.43842 -8.75367 -8.50022 -8.15171 -7.96795 -6.41818 -3.82802 1.85710 2.46431 2.80472 3.20143 3.25968 3.30285 3.89619 3.95478 4.01337 4.07279 4.15957 4.21585 4.27499 4.29508 4.55724 4.66293 4.81066 4.98773 5.05695 5.07250 5.18769 5.19766 5.24936 5.29344 5.33246 5.36415 5.37998 5.39393 5.53661 5.58794 5.60603 5.69101 5.73959 5.77691 5.81871 5.84124 5.92843 5.99610 6.04858 6.06331 6.17803 6.26043 6.36476 6.55658 7.14534 7.36199 7.54814 7.57531 8.03710 8.05479 8.60541 9.17316 9.53656 10.04803 10.75757 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.026399 B = 0.002024 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1060.380634 B =13831.006848 C =14074.722578 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.146 4.146 3 C -0.081 4.081 4 C -0.100 4.100 5 C -0.140 4.140 6 C 0.544 3.456 7 O -0.537 6.537 8 N -0.610 5.610 9 C 0.103 3.897 10 C -0.107 4.107 11 H 0.090 0.910 12 C -0.135 4.135 13 C 0.078 3.922 14 H 0.060 0.940 15 N -0.654 5.654 16 C 0.048 3.952 17 C 0.441 3.559 18 O -0.583 6.583 19 N -0.563 5.563 20 C -0.300 4.300 21 H 0.103 0.897 22 C 0.022 3.978 23 N -0.901 5.901 24 Si 0.931 3.069 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.274 1.274 28 C 0.114 3.886 29 C -0.087 4.087 30 H 0.106 0.894 31 H 0.106 0.894 32 H 0.078 0.922 33 H 0.106 0.894 34 H 0.064 0.936 35 H 0.068 0.932 36 H 0.075 0.925 37 H 0.072 0.928 38 H 0.081 0.919 39 H 0.072 0.928 40 H 0.050 0.950 41 H 0.060 0.940 42 H 0.355 0.645 43 H 0.086 0.914 44 H 0.045 0.955 45 H 0.392 0.608 46 H 0.272 0.728 47 H 0.085 0.915 48 H 0.064 0.936 49 H 0.096 0.904 50 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.932 3.740 11.456 27.692 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.146 4.146 3 C -0.118 4.118 4 C -0.103 4.103 5 C -0.197 4.197 6 C 0.332 3.668 7 O -0.413 6.413 8 N -0.344 5.344 9 C -0.020 4.020 10 C -0.126 4.126 11 H 0.108 0.892 12 C -0.192 4.192 13 C -0.033 4.033 14 H 0.078 0.922 15 N -0.288 5.288 16 C -0.084 4.084 17 C 0.226 3.774 18 O -0.468 6.468 19 N -0.199 5.199 20 C -0.430 4.430 21 H 0.120 0.880 22 C -0.179 4.179 23 N -0.543 5.543 24 Si 0.758 3.242 25 H -0.199 1.199 26 H -0.210 1.210 27 H -0.199 1.199 28 C -0.009 4.009 29 C -0.125 4.125 30 H 0.124 0.876 31 H 0.124 0.876 32 H 0.097 0.903 33 H 0.124 0.876 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.091 0.909 40 H 0.069 0.931 41 H 0.079 0.921 42 H 0.177 0.823 43 H 0.104 0.896 44 H 0.063 0.937 45 H 0.225 0.775 46 H 0.082 0.918 47 H 0.103 0.897 48 H 0.083 0.917 49 H 0.115 0.885 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -25.061 3.974 9.998 27.273 hybrid contribution 1.309 -0.142 0.702 1.492 sum -23.752 3.833 10.700 26.331 Atomic orbital electron populations 1.22870 0.93332 1.02198 1.02473 1.22817 0.93823 0.97978 1.00010 1.22246 0.91929 0.95462 1.02211 1.21889 0.90947 1.00212 0.97283 1.21868 1.03217 1.03349 0.91260 1.19967 0.85791 0.79637 0.81424 1.90714 1.79414 1.38631 1.32559 1.48352 1.11615 1.33333 1.41093 1.22572 0.99713 0.88155 0.91545 1.22555 0.94175 0.95829 1.00048 0.89156 1.21608 1.01160 0.99017 0.97464 1.22537 0.93246 0.93799 0.93744 0.92248 1.60084 1.08215 1.06416 1.54121 1.21763 0.88809 0.99476 0.98396 1.19759 0.83070 0.87779 0.86775 1.90520 1.74346 1.30074 1.51836 1.41856 1.07879 1.27853 1.42336 1.19650 0.90748 1.09915 1.22653 0.87961 1.25268 0.97529 0.96916 0.98222 1.69603 1.15976 1.25683 1.42999 0.85912 0.78493 0.79509 0.80268 1.19865 1.20981 1.19935 1.22016 0.80267 0.97689 1.00894 1.22324 0.92975 0.95708 1.01453 0.87574 0.87616 0.90347 0.87582 0.91737 0.91277 0.90640 0.90971 0.90071 0.90924 0.93076 0.92096 0.82343 0.89562 0.93693 0.77452 0.91806 0.89715 0.91719 0.88533 0.90011 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.13 14.71 29.01 0.43 -0.70 16 2 C -0.15 -1.15 6.60 -100.19 -0.66 -1.81 16 3 C -0.08 -0.74 6.97 -27.01 -0.19 -0.93 16 4 C -0.10 -0.90 0.76 -154.87 -0.12 -1.01 16 5 C -0.14 -0.94 8.78 37.15 0.33 -0.61 16 6 C 0.54 6.78 6.98 -10.98 -0.08 6.70 16 7 O -0.54 -8.94 16.24 5.56 0.09 -8.85 16 8 N -0.61 -6.77 3.31 -170.52 -0.56 -7.34 16 9 C 0.10 0.80 4.46 -2.53 -0.01 0.79 16 10 C -0.11 -0.94 3.46 -88.47 -0.31 -1.24 16 11 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 12 C -0.14 -1.35 8.75 37.15 0.32 -1.02 16 13 C 0.08 0.89 3.03 -65.88 -0.20 0.69 16 14 H 0.06 0.63 7.89 -51.93 -0.41 0.22 16 15 N -0.65 -9.79 5.12 -106.05 -0.54 -10.34 16 16 C 0.05 0.82 6.02 -4.97 -0.03 0.79 16 17 C 0.44 10.25 7.82 -10.98 -0.09 10.16 16 18 O -0.58 -15.58 15.78 5.55 0.09 -15.49 16 19 N -0.56 -14.21 5.29 -10.97 -0.06 -14.26 16 20 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 21 H 0.10 2.98 7.16 -52.49 -0.38 2.61 16 22 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 23 N -0.90 -24.56 13.05 55.50 0.72 -23.84 16 24 Si 0.93 21.11 29.55 -169.99 -5.02 16.09 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 27 H -0.27 -6.15 7.11 56.52 0.40 -5.74 16 28 C 0.11 1.47 6.24 -3.07 -0.02 1.45 16 29 C -0.09 -0.69 6.68 -26.91 -0.18 -0.87 16 30 H 0.11 0.60 8.06 -52.49 -0.42 0.18 16 31 H 0.11 0.58 8.06 -52.49 -0.42 0.15 16 32 H 0.08 0.64 8.10 -51.93 -0.42 0.22 16 33 H 0.11 1.15 7.44 -51.93 -0.39 0.76 16 34 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.40 7.70 -51.93 -0.40 0.00 16 36 H 0.07 0.43 4.12 -51.93 -0.21 0.22 16 37 H 0.07 0.46 7.05 -51.93 -0.37 0.09 16 38 H 0.08 0.52 6.52 -51.93 -0.34 0.18 16 39 H 0.07 0.84 6.69 -51.93 -0.35 0.50 16 40 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.72 7.91 -51.93 -0.41 0.31 16 42 H 0.35 5.38 6.99 -39.29 -0.27 5.11 16 43 H 0.09 1.41 8.13 -51.93 -0.42 0.98 16 44 H 0.05 0.68 8.08 -51.93 -0.42 0.26 16 45 H 0.39 9.48 7.90 -40.82 -0.32 9.16 16 46 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 47 H 0.08 1.32 8.03 -51.93 -0.42 0.91 16 48 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 49 H 0.10 0.87 8.09 -51.93 -0.42 0.45 16 50 H 0.08 0.51 7.97 -51.93 -0.41 0.10 16 LS Contribution 398.87 15.07 6.01 6.01 Total: -1.00 -32.96 398.87 -8.35 -41.30 By element: Atomic # 1 Polarization: 20.37 SS G_CDS: -8.03 Total: 12.34 kcal Atomic # 6 Polarization: 5.41 SS G_CDS: -1.04 Total: 4.37 kcal Atomic # 7 Polarization: -55.34 SS G_CDS: -0.44 Total: -55.78 kcal Atomic # 8 Polarization: -24.51 SS G_CDS: 0.18 Total: -24.34 kcal Atomic # 14 Polarization: 21.11 SS G_CDS: -5.02 Total: 16.09 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -32.96 -8.35 -41.30 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724939196.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.200 kcal (2) G-P(sol) polarization free energy of solvation -32.959 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds