Wall clock time and date at job start Tue Mar 31 2020 18:34:56
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.30993 * 1
3 3 C 1.51579 * 135.78089 * 2 1
4 4 C 1.53840 * 86.75655 * 154.84142 * 3 2 1
5 5 C 1.52997 * 113.65741 * 270.21776 * 4 3 2
6 6 C 1.50703 * 113.65680 * 139.26571 * 4 3 2
7 7 O 1.21276 * 120.00168 * 8.50664 * 6 4 3
8 8 N 1.34781 * 119.99868 * 188.49932 * 6 4 3
9 9 C 1.47480 * 127.03402 * 175.61346 * 8 6 4
10 10 C 1.54004 * 107.08567 * 205.41475 * 9 8 6
11 11 H 1.09001 * 110.32324 * 239.69988 * 10 9 8
12 12 N 1.46899 * 110.33079 * 117.58281 * 10 9 8
13 13 C 1.46900 * 110.99869 * 86.45091 * 12 10 9
14 14 C 1.50701 * 109.47293 * 179.97438 * 13 12 10
15 15 O 1.21296 * 119.99743 * 0.02562 * 14 13 12
16 16 N 1.34776 * 120.00123 * 180.02562 * 14 13 12
17 17 C 1.37095 * 119.99672 * 180.02562 * 16 14 13
18 18 H 1.07997 * 120.00454 * 359.97438 * 17 16 14
19 19 C 1.38956 * 119.99843 * 180.02562 * 17 16 14
20 20 N 1.31407 * 120.00008 * 180.02562 * 19 17 16
21 21 Si 1.86796 * 119.99850 * 359.97438 * 19 17 16
22 22 H 1.48502 * 109.46853 * 90.00556 * 21 19 17
23 23 H 1.48500 * 109.47056 * 210.00383 * 21 19 17
24 24 H 1.48494 * 109.47511 * 330.00808 * 21 19 17
25 25 C 1.54615 * 105.04332 * 358.69075 * 10 9 8
26 26 H 1.08994 * 110.73841 * 96.48709 * 25 10 9
27 27 C 1.53001 * 110.73991 * 219.81662 * 25 10 9
28 28 C 1.48113 * 127.03443 * 355.56862 * 8 6 4
29 29 C 1.51581 * 135.78492 * 179.97438 * 2 1 3
30 30 H 1.08003 * 119.99998 * 0.02562 * 1 2 3
31 31 H 1.07998 * 120.00322 * 180.02562 * 1 2 3
32 32 H 1.08996 * 113.66981 * 40.37456 * 3 2 1
33 33 H 1.09005 * 113.75266 * 269.31927 * 3 2 1
34 34 H 1.09001 * 109.47016 * 282.28807 * 5 4 3
35 35 H 1.08993 * 109.47261 * 42.29289 * 5 4 3
36 36 H 1.09004 * 109.46889 * 162.29536 * 5 4 3
37 37 H 1.08999 * 109.91726 * 86.04625 * 9 8 6
38 38 H 1.09002 * 110.07090 * 324.86281 * 9 8 6
39 39 H 1.00894 * 110.99859 * 210.40908 * 12 10 9
40 40 H 1.08997 * 109.47518 * 300.00690 * 13 12 10
41 41 H 1.09006 * 109.46620 * 60.00449 * 13 12 10
42 42 H 0.96996 * 119.99707 * 359.97438 * 16 14 13
43 43 H 0.97001 * 119.99832 * 179.97438 * 20 19 17
44 44 H 1.09001 * 109.47150 * 60.00250 * 27 25 10
45 45 H 1.09008 * 109.47023 * 179.97438 * 27 25 10
46 46 H 1.08990 * 109.47156 * 299.99849 * 27 25 10
47 47 H 1.08998 * 110.66657 * 259.18781 * 28 8 6
48 48 H 1.09004 * 110.65943 * 22.13387 * 28 8 6
49 49 H 1.08995 * 113.66642 * 90.68746 * 29 2 1
50 50 H 1.09008 * 113.66490 * 319.61995 * 29 2 1
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.3099 0.0000 0.0000
3 6 2.3963 1.0571 0.0000
4 6 3.3034 0.0001 0.6530
5 6 3.2460 0.0017 2.1819
6 6 4.7129 0.0000 0.1195
7 8 5.0781 0.8819 -0.6286
8 7 5.5675 -0.9800 0.4739
9 6 6.9419 -1.1821 -0.0213
10 6 7.2632 -2.6802 0.1340
11 1 8.1262 -2.8168 0.7856
12 7 7.5157 -3.2869 -1.1798
13 6 8.9236 -3.1316 -1.5695
14 6 9.1442 -3.7653 -2.9189
15 8 8.2194 -4.2938 -3.4992
16 7 10.3690 -3.7447 -3.4809
17 6 10.5695 -4.3207 -4.7088
18 1 9.7461 -4.7913 -5.2254
19 6 11.8324 -4.2999 -5.2880
20 7 12.0244 -4.8516 -6.4651
21 14 13.2567 -3.4866 -4.3940
22 1 13.9391 -4.4882 -3.5359
23 1 14.2202 -2.9464 -5.3865
24 1 12.7430 -2.3788 -3.5490
25 6 5.9993 -3.2972 0.7764
26 1 5.3523 -3.7321 0.0147
27 6 6.3805 -4.3422 1.8269
28 6 5.3189 -2.0740 1.4410
29 6 2.3963 -1.0571 0.0005
30 1 -0.5400 0.9353 -0.0004
31 1 -0.5400 -0.9353 0.0004
32 1 2.1795 1.9073 0.6467
33 1 2.7192 1.3548 -0.9976
34 1 3.8411 0.8297 2.5669
35 1 2.2118 0.1157 2.5065
36 1 3.6443 -0.9393 2.5614
37 1 7.6404 -0.5894 0.5695
38 1 7.0074 -0.8953 -1.0709
39 1 7.2433 -4.2584 -1.1879
40 1 9.1717 -2.0715 -1.6205
41 1 9.5607 -3.6188 -0.8312
42 1 11.1084 -3.3217 -3.0170
43 1 12.9060 -4.8367 -6.8696
44 1 6.9780 -3.8713 2.6076
45 1 5.4758 -4.7627 2.2661
46 1 6.9592 -5.1365 1.3558
47 1 5.7826 -1.8508 2.4018
48 1 4.2491 -2.2444 1.5621
49 1 2.7183 -1.3540 -0.9976
50 1 2.1796 -1.9070 0.6477
RHF calculation, no. of doubly occupied orbitals= 64
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001724939200.mol2 50
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 18:34:56
Heat of formation + Delta-G solvation = -40.675136 kcal
Electronic energy + Delta-G solvation = -29291.598745 eV
Core-core repulsion = 25319.214299 eV
Total energy + Delta-G solvation = -3972.384446 eV
No. of doubly occupied orbitals = 64
Molecular weight
(most abundant/longest-lived isotopes) = 335.200 amu
Computer time = 0.91 seconds
Orbital eigenvalues (eV)
-41.88056 -40.47478 -39.76270 -38.46427 -36.25831 -35.61045 -33.79246 -33.44675
-32.52215 -30.14306 -28.67820 -28.10206 -27.33392 -26.90924 -25.92136 -24.25422
-22.47723 -21.36819 -21.09464 -20.26706 -19.90412 -18.77090 -18.15959 -17.61012
-17.41759 -16.96410 -16.72835 -16.38332 -16.04812 -15.77416 -15.57961 -15.30805
-15.10545 -14.99695 -14.78341 -14.38932 -14.33230 -14.10676 -13.91817 -13.74777
-13.51030 -13.25936 -13.22397 -13.01823 -12.93983 -12.89178 -12.73762 -12.44219
-12.35658 -12.09573 -12.03522 -11.98915 -11.73034 -11.53555 -11.52241 -11.15282
-10.76254 -10.46341 -10.27310 -10.03707 -9.77499 -9.35540 -8.43313 -6.04410
1.27376 1.28972 1.33720 1.43135 1.55901 1.92552 1.94566 2.21338
2.68730 3.13055 3.26247 3.31088 3.35421 3.49930 3.54563 3.60270
3.88624 3.96048 4.10532 4.15396 4.21223 4.35784 4.40399 4.44222
4.51649 4.54365 4.57956 4.65422 4.71774 4.74882 4.75142 4.82827
4.89023 4.90140 4.94691 4.98193 5.06821 5.15585 5.21754 5.26254
5.32437 5.45051 5.51540 5.55040 5.88990 5.98142 6.04370 6.36662
6.52984 6.57510 6.85639 7.10167 7.37118 7.93646 8.74367
Molecular weight = 335.20amu
Principal moments of inertia in cm(-1)
A = 0.017745 B = 0.002321 C = 0.002243
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1577.488568 B =12061.621367 C =12481.606771
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.155 4.155
2 C -0.162 4.162
3 C -0.089 4.089
4 C -0.094 4.094
5 C -0.125 4.125
6 C 0.537 3.463
7 O -0.593 6.593
8 N -0.613 5.613
9 C 0.107 3.893
10 C 0.082 3.918
11 H 0.089 0.911
12 N -0.681 5.681
13 C 0.062 3.938
14 C 0.448 3.552
15 O -0.615 6.615
16 N -0.591 5.591
17 C -0.329 4.329
18 H 0.054 0.946
19 C -0.016 4.016
20 N -0.934 5.934
21 Si 0.966 3.034
22 H -0.253 1.253
23 H -0.276 1.276
24 H -0.234 1.234
25 C -0.104 4.104
26 H 0.078 0.922
27 C -0.138 4.138
28 C 0.104 3.896
29 C -0.084 4.084
30 H 0.117 0.883
31 H 0.122 0.878
32 H 0.087 0.913
33 H 0.073 0.927
34 H 0.060 0.940
35 H 0.083 0.917
36 H 0.089 0.911
37 H 0.078 0.922
38 H 0.048 0.952
39 H 0.351 0.649
40 H 0.104 0.896
41 H 0.087 0.913
42 H 0.390 0.610
43 H 0.279 0.721
44 H 0.075 0.925
45 H 0.077 0.923
46 H 0.052 0.948
47 H 0.103 0.897
48 H 0.105 0.895
49 H 0.073 0.927
50 H 0.106 0.894
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.411 7.871 28.926 34.175
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.191 4.191
2 C -0.162 4.162
3 C -0.126 4.126
4 C -0.097 4.097
5 C -0.182 4.182
6 C 0.328 3.672
7 O -0.474 6.474
8 N -0.345 5.345
9 C -0.016 4.016
10 C -0.028 4.028
11 H 0.107 0.893
12 N -0.316 5.316
13 C -0.070 4.070
14 C 0.236 3.764
15 O -0.500 6.500
16 N -0.232 5.232
17 C -0.459 4.459
18 H 0.072 0.928
19 C -0.215 4.215
20 N -0.574 5.574
21 Si 0.786 3.214
22 H -0.177 1.177
23 H -0.201 1.201
24 H -0.157 1.157
25 C -0.123 4.123
26 H 0.096 0.904
27 C -0.195 4.195
28 C -0.018 4.018
29 C -0.122 4.122
30 H 0.135 0.865
31 H 0.140 0.860
32 H 0.105 0.895
33 H 0.092 0.908
34 H 0.079 0.921
35 H 0.102 0.898
36 H 0.108 0.892
37 H 0.096 0.904
38 H 0.066 0.934
39 H 0.171 0.829
40 H 0.122 0.878
41 H 0.105 0.895
42 H 0.225 0.775
43 H 0.089 0.911
44 H 0.094 0.906
45 H 0.096 0.904
46 H 0.071 0.929
47 H 0.121 0.879
48 H 0.123 0.877
49 H 0.091 0.909
50 H 0.124 0.876
Dipole moment (debyes) X Y Z Total
from point charges -16.959 8.543 27.605 33.505
hybrid contribution 1.626 -0.240 -0.551 1.734
sum -15.333 8.302 27.054 32.186
Atomic orbital electron populations
1.23153 0.92801 1.03472 0.99635 1.22671 0.94113 0.96956 1.02457
1.22186 0.93116 0.96476 1.00856 1.21976 0.88293 1.00372 0.99060
1.21744 1.04102 1.03848 0.88495 1.20696 0.87126 0.79718 0.79694
1.90679 1.78904 1.38434 1.39369 1.48746 1.14343 1.28103 1.43292
1.22142 0.83425 0.96552 0.99527 1.22607 0.99035 0.92514 0.88638
0.89335 1.60057 1.18871 1.23530 1.29101 1.21684 0.91006 1.02020
0.92331 1.20997 0.82255 0.83671 0.89523 1.90546 1.43085 1.50020
1.66303 1.42034 1.10081 1.52975 1.18139 1.18999 0.96813 1.34692
0.95366 0.92775 1.26145 1.00905 0.97692 0.96747 1.69805 1.24922
1.45206 1.17503 0.85351 0.77456 0.79677 0.78954 1.17699 1.20086
1.15696 1.22470 0.95360 0.96075 0.98414 0.90409 1.21750 1.02732
0.97424 0.97629 1.23054 1.02824 0.83727 0.92183 1.22225 0.92767
0.96436 1.00728 0.86530 0.86028 0.89462 0.90815 0.92108 0.89778
0.89234 0.90412 0.93380 0.82872 0.87787 0.89542 0.77455 0.91113
0.90626 0.90379 0.92858 0.87858 0.87713 0.90881 0.87584
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.83 14.71 67.79 1.00 -0.84 16
2 C -0.16 -2.53 6.59 -15.98 -0.11 -2.64 16
3 C -0.09 -1.74 6.92 30.41 0.21 -1.53 16
4 C -0.09 -1.67 0.72 -52.42 -0.04 -1.71 16
5 C -0.13 -1.31 8.64 71.98 0.62 -0.69 16
6 C 0.54 14.02 6.95 87.66 0.61 14.63 16
7 O -0.59 -21.65 16.36 -3.02 -0.05 -21.70 16
8 N -0.61 -13.04 3.29 -809.40 -2.66 -15.71 16
9 C 0.11 2.54 6.65 86.53 0.58 3.11 16
10 C 0.08 1.59 2.89 45.80 0.13 1.72 16
11 H 0.09 1.30 7.57 -2.39 -0.02 1.28 16
12 N -0.68 -19.62 5.80 -490.98 -2.85 -22.46 16
13 C 0.06 1.88 6.00 85.56 0.51 2.39 16
14 C 0.45 20.51 7.82 87.66 0.69 21.20 16
15 O -0.62 -34.74 15.78 -3.08 -0.05 -34.79 16
16 N -0.59 -28.31 5.09 -306.98 -1.56 -29.87 16
17 C -0.33 -19.64 10.16 84.04 0.85 -18.78 16
18 H 0.05 3.84 7.39 -2.91 -0.02 3.82 16
19 C -0.02 -0.92 5.50 84.93 0.47 -0.45 16
20 N -0.93 -57.03 13.96 21.66 0.30 -56.73 16
21 Si 0.97 39.27 27.74 68.60 1.90 41.17 16
22 H -0.25 -9.57 7.11 99.48 0.71 -8.86 16
23 H -0.28 -11.18 7.11 99.48 0.71 -10.47 16
24 H -0.23 -8.09 6.52 99.48 0.65 -7.44 16
25 C -0.10 -1.47 3.12 -9.58 -0.03 -1.50 16
26 H 0.08 1.42 8.00 -2.39 -0.02 1.40 16
27 C -0.14 -1.22 9.16 71.98 0.66 -0.56 16
28 C 0.10 1.21 5.03 86.73 0.44 1.65 16
29 C -0.08 -1.36 6.63 30.40 0.20 -1.16 16
30 H 0.12 1.14 8.06 -2.91 -0.02 1.12 16
31 H 0.12 1.09 8.06 -2.91 -0.02 1.07 16
32 H 0.09 1.46 8.10 -2.39 -0.02 1.44 16
33 H 0.07 1.88 7.55 -2.38 -0.02 1.86 16
34 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16
35 H 0.08 0.69 7.70 -2.39 -0.02 0.67 16
36 H 0.09 0.57 5.26 -2.39 -0.01 0.56 16
37 H 0.08 1.59 8.14 -2.39 -0.02 1.57 16
38 H 0.05 1.56 7.88 -2.39 -0.02 1.54 16
39 H 0.35 10.47 8.10 -89.70 -0.73 9.75 16
40 H 0.10 2.87 8.11 -2.39 -0.02 2.86 16
41 H 0.09 2.00 8.08 -2.38 -0.02 1.98 16
42 H 0.39 15.43 5.76 -92.71 -0.53 14.89 16
43 H 0.28 15.56 8.31 -92.71 -0.77 14.79 16
44 H 0.07 0.46 8.10 -2.39 -0.02 0.44 16
45 H 0.08 0.48 8.14 -2.38 -0.02 0.46 16
46 H 0.05 0.61 8.14 -2.39 -0.02 0.59 16
47 H 0.10 0.71 8.02 -2.39 -0.02 0.69 16
48 H 0.10 0.86 5.21 -2.38 -0.01 0.85 16
49 H 0.07 1.54 8.09 -2.39 -0.02 1.52 16
50 H 0.11 1.13 7.83 -2.38 -0.02 1.11 16
Total: -1.00 -86.54 399.96 1.46 -85.08
By element:
Atomic # 1 Polarization: 40.53 SS G_CDS: -0.37 Total: 40.17 kcal
Atomic # 6 Polarization: 8.05 SS G_CDS: 6.79 Total: 14.85 kcal
Atomic # 7 Polarization: -118.01 SS G_CDS: -6.77 Total: -124.77 kcal
Atomic # 8 Polarization: -56.39 SS G_CDS: -0.10 Total: -56.49 kcal
Atomic # 14 Polarization: 39.27 SS G_CDS: 1.90 Total: 41.17 kcal
Total: -86.54 1.46 -85.08 kcal
The number of atoms in the molecule is 50
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001724939200.mol2 50
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 44.406 kcal
(2) G-P(sol) polarization free energy of solvation -86.542 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.136 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.461 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.081 kcal
(6) G-S(sol) free energy of system = (1) + (5) -40.675 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.91 seconds