Wall clock time and date at job start Tue Mar 31 2020 19:34:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47108 * 2 1 4 4 N 1.46498 * 109.46923 * 119.99824 * 2 1 3 5 5 C 1.35542 * 125.67545 * 305.47931 * 4 2 1 6 6 C 1.35455 * 108.86875 * 180.02562 * 5 4 2 7 7 C 1.39839 * 107.86417 * 359.97438 * 6 5 4 8 8 C 1.37652 * 125.68024 * 125.78388 * 4 2 1 9 9 C 1.46675 * 126.22885 * 0.02562 * 8 4 2 10 10 O 1.21694 * 120.00554 * 27.34201 * 9 8 4 11 11 N 1.34781 * 119.99493 * 207.33780 * 9 8 4 12 12 C 1.47144 * 120.98221 * 7.11617 * 11 9 8 13 13 C 1.53297 * 108.38217 * 230.50699 * 12 11 9 14 14 O 1.42964 * 109.22274 * 307.69695 * 13 12 11 15 15 C 1.42960 * 114.16233 * 62.58284 * 14 13 12 16 16 H 1.09004 * 109.51626 * 57.39482 * 15 14 13 17 17 C 1.53006 * 109.50772 * 177.49139 * 15 14 13 18 18 H 1.08999 * 109.46904 * 174.99866 * 17 15 14 19 19 C 1.52999 * 109.46972 * 55.00299 * 17 15 14 20 20 N 1.46495 * 109.47119 * 294.99933 * 17 15 14 21 21 C 1.36943 * 119.99836 * 205.00117 * 20 17 15 22 22 H 1.08000 * 119.99712 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00272 * 180.02562 * 21 20 17 24 24 N 1.31622 * 119.99502 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00164 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47379 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47112 * 120.00155 * 25 23 21 28 28 H 1.48500 * 109.47253 * 239.99736 * 25 23 21 29 29 C 1.47152 * 120.97758 * 186.82831 * 11 9 8 30 30 H 1.09002 * 109.47024 * 60.00105 * 1 2 3 31 31 H 1.08997 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47434 * 300.00296 * 1 2 3 33 33 H 1.08996 * 109.46910 * 239.99861 * 2 1 3 34 34 H 1.08994 * 109.47215 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47092 * 299.99854 * 3 2 1 36 36 H 1.09005 * 109.47215 * 59.99569 * 3 2 1 37 37 H 1.07990 * 125.56769 * 359.97438 * 5 4 2 38 38 H 1.08000 * 126.06874 * 180.02562 * 6 5 4 39 39 H 1.07997 * 126.45435 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.68758 * 350.23021 * 12 11 9 41 41 H 1.09003 * 109.68512 * 110.79071 * 12 11 9 42 42 H 1.08996 * 109.51496 * 67.62449 * 13 12 11 43 43 H 1.09006 * 109.51211 * 187.72530 * 13 12 11 44 44 H 1.08999 * 109.46953 * 299.99538 * 19 17 15 45 45 H 1.08993 * 109.47276 * 59.99447 * 19 17 15 46 46 H 1.09007 * 109.46765 * 180.02562 * 19 17 15 47 47 H 0.96992 * 120.00739 * 25.00161 * 20 17 15 48 48 H 0.97002 * 119.99283 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.68138 * 249.21467 * 29 11 9 50 50 H 1.08993 * 109.68498 * 9.76720 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6793 -0.3932 2.4744 6 6 2.3262 -1.2424 3.3081 7 6 3.0997 -2.1055 2.5257 8 6 2.9023 -1.7456 1.2095 9 6 3.5196 -2.3743 0.0368 10 8 3.6892 -1.7291 -0.9809 11 7 3.8990 -3.6666 0.0866 12 6 3.5661 -4.5097 1.2457 13 6 4.8476 -5.2019 1.7239 14 8 5.4680 -5.8605 0.6170 15 6 5.8859 -4.9798 -0.4286 16 1 6.5739 -4.2365 -0.0255 17 6 6.5879 -5.7845 -1.5244 18 1 6.8272 -5.1277 -2.3607 19 6 5.6643 -6.9058 -2.0047 20 7 7.8226 -6.3640 -0.9898 21 6 8.8550 -6.6742 -1.8342 22 1 8.7589 -6.4920 -2.8944 23 6 10.0248 -7.2238 -1.3278 24 7 10.1413 -7.4473 -0.0359 25 14 11.4328 -7.6476 -2.4797 26 1 11.0532 -7.3026 -3.8733 27 1 12.6402 -6.8756 -2.0906 28 1 11.7247 -9.1009 -2.3910 29 6 4.6528 -4.2778 -1.0196 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.0043 0.3930 2.7785 38 1 2.2563 -1.2518 4.3858 39 1 3.7360 -2.9007 2.8851 40 1 3.1628 -3.8901 2.0467 41 1 2.8305 -5.2597 0.9551 42 1 5.5310 -4.4590 2.1351 43 1 4.6007 -5.9343 2.4925 44 1 5.4250 -7.5626 -1.1684 45 1 4.7457 -6.4746 -2.4024 46 1 6.1646 -7.4793 -2.7851 47 1 7.9088 -6.5280 -0.0377 48 1 10.9589 -7.8310 0.3180 49 1 4.0246 -5.0047 -1.5344 50 1 4.9694 -3.5045 -1.7195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725320555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:59 Heat of formation + Delta-G solvation = 2.503354 kcal Electronic energy + Delta-G solvation = -30095.437746 eV Core-core repulsion = 26124.925660 eV Total energy + Delta-G solvation = -3970.512086 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.85265 -39.94153 -38.16565 -36.02497 -35.34756 -34.46226 -32.51999 -30.67237 -30.14744 -29.39116 -28.45141 -27.73399 -27.03854 -24.74855 -23.52513 -23.21702 -22.58899 -21.35569 -20.58450 -19.59187 -18.81835 -17.64074 -17.11823 -16.56416 -16.20291 -15.64534 -15.55954 -15.19010 -14.96850 -14.93617 -14.50427 -14.38182 -14.21009 -13.93654 -13.39624 -13.29020 -13.03172 -12.90345 -12.79240 -12.70865 -12.61683 -12.45868 -12.39492 -12.03741 -11.73997 -11.55998 -11.39603 -11.21857 -11.09433 -10.82700 -10.70662 -10.50117 -10.26184 -10.07135 -9.81286 -9.78141 -9.62493 -8.94226 -8.87368 -8.56764 -8.29779 -6.90390 -5.71001 -2.99570 1.33467 2.31219 2.52345 3.00996 3.13351 3.46606 3.52217 3.54434 4.03536 4.23854 4.32562 4.51935 4.60776 4.72866 4.75785 4.81919 4.99206 5.04465 5.05630 5.12955 5.19011 5.20452 5.24886 5.32499 5.37620 5.45550 5.49924 5.58316 5.62887 5.70746 5.73752 5.78891 5.82299 5.85780 5.98497 6.01327 6.03049 6.23310 6.36189 6.49370 6.58325 6.68201 6.79491 6.85131 7.00347 7.18907 7.26925 7.51739 7.74846 8.01481 8.47302 9.59191 10.16999 10.53698 11.51540 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.002531 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.701344 B =11062.150245 C =11441.302072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.113 3.887 3 C -0.158 4.158 4 N -0.401 5.401 5 C 0.013 3.987 6 C -0.205 4.205 7 C -0.155 4.155 8 C -0.042 4.042 9 C 0.589 3.411 10 O -0.548 6.548 11 N -0.598 5.598 12 C 0.039 3.961 13 C 0.045 3.955 14 O -0.358 6.358 15 C 0.076 3.924 16 H 0.064 0.936 17 C 0.185 3.815 18 H 0.059 0.941 19 C -0.162 4.162 20 N -0.719 5.719 21 C -0.237 4.237 22 H 0.071 0.929 23 C -0.014 4.014 24 N -0.930 5.930 25 Si 0.906 3.094 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C 0.086 3.914 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.063 0.937 33 H 0.117 0.883 34 H 0.066 0.934 35 H 0.076 0.924 36 H 0.060 0.940 37 H 0.164 0.836 38 H 0.142 0.858 39 H 0.155 0.845 40 H 0.123 0.877 41 H 0.076 0.924 42 H 0.054 0.946 43 H 0.104 0.896 44 H 0.057 0.943 45 H 0.034 0.966 46 H 0.052 0.948 47 H 0.389 0.611 48 H 0.254 0.746 49 H 0.082 0.918 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.962 15.072 6.091 28.135 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.012 3.988 3 C -0.215 4.215 4 N -0.075 5.075 5 C -0.122 4.122 6 C -0.229 4.229 7 C -0.181 4.181 8 C -0.156 4.156 9 C 0.378 3.622 10 O -0.427 6.427 11 N -0.331 5.331 12 C -0.083 4.083 13 C -0.033 4.033 14 O -0.276 6.276 15 C 0.017 3.983 16 H 0.082 0.918 17 C 0.074 3.926 18 H 0.077 0.923 19 C -0.222 4.222 20 N -0.361 5.361 21 C -0.369 4.369 22 H 0.089 0.911 23 C -0.210 4.210 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 C -0.037 4.037 30 H 0.096 0.904 31 H 0.082 0.918 32 H 0.082 0.918 33 H 0.135 0.865 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.080 0.920 37 H 0.182 0.818 38 H 0.160 0.840 39 H 0.172 0.828 40 H 0.140 0.860 41 H 0.094 0.906 42 H 0.072 0.928 43 H 0.122 0.878 44 H 0.076 0.924 45 H 0.053 0.947 46 H 0.071 0.929 47 H 0.223 0.777 48 H 0.064 0.936 49 H 0.100 0.900 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -22.835 15.357 5.033 27.975 hybrid contribution 0.776 -0.106 -0.085 0.788 sum -22.059 15.252 4.948 27.271 Atomic orbital electron populations 1.22173 0.93354 1.03119 1.03213 1.21764 0.95040 0.94500 0.87522 1.22121 1.02639 0.93978 1.02806 1.44188 1.32622 1.24116 1.06579 1.21868 1.04606 1.03167 0.82557 1.20837 1.03241 0.99511 0.99311 1.21554 1.03657 1.02020 0.90874 1.20055 1.03794 0.96806 0.94923 1.17052 0.78046 0.81274 0.85838 1.90775 1.56698 1.62775 1.32464 1.47806 1.55336 1.09179 1.20736 1.23324 0.99061 0.95776 0.90154 1.22911 0.92604 0.97560 0.90188 1.88098 1.77902 1.32993 1.28563 1.23063 0.93124 0.92591 0.89534 0.91784 1.20192 0.87241 0.93045 0.92093 0.92334 1.22416 0.97962 1.00551 1.01306 1.42360 1.11302 1.74395 1.08005 1.19294 0.92936 1.34040 0.90588 0.91137 1.24740 0.98267 1.02104 0.95896 1.69694 1.27240 1.50137 1.10810 0.86135 0.82630 0.77695 0.79847 1.20578 1.21955 1.21924 1.22613 0.93740 0.98238 0.89060 0.90397 0.91789 0.91775 0.86467 0.91450 0.90561 0.92045 0.81841 0.83985 0.82763 0.85974 0.90619 0.92803 0.87790 0.92410 0.94690 0.92906 0.77656 0.93639 0.89956 0.88264 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.16 37.16 0.34 -0.69 16 2 C 0.11 1.02 3.38 -67.93 -0.23 0.80 16 3 C -0.16 -1.21 9.31 37.16 0.35 -0.86 16 4 N -0.40 -4.18 2.64 -105.81 -0.28 -4.46 16 5 C 0.01 0.11 10.34 -16.91 -0.17 -0.06 16 6 C -0.21 -1.83 10.81 -39.98 -0.43 -2.27 16 7 C -0.16 -1.63 8.64 -39.12 -0.34 -1.97 16 8 C -0.04 -0.52 6.49 -81.98 -0.53 -1.05 16 9 C 0.59 8.62 7.46 -12.85 -0.10 8.53 16 10 O -0.55 -9.37 14.51 5.19 0.08 -9.29 16 11 N -0.60 -8.24 3.01 -173.57 -0.52 -8.76 16 12 C 0.04 0.44 6.06 -3.54 -0.02 0.41 16 13 C 0.05 0.57 6.94 37.31 0.26 0.83 16 14 O -0.36 -6.14 9.24 -35.23 -0.33 -6.46 16 15 C 0.08 1.33 2.62 -26.36 -0.07 1.26 16 16 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 17 C 0.18 3.76 2.77 -67.93 -0.19 3.57 16 18 H 0.06 1.19 8.08 -51.93 -0.42 0.77 16 19 C -0.16 -3.03 9.06 37.16 0.34 -2.69 16 20 N -0.72 -18.43 5.10 -53.42 -0.27 -18.70 16 21 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 22 H 0.07 1.92 7.83 -52.49 -0.41 1.51 16 23 C -0.01 -0.41 5.50 -17.43 -0.10 -0.51 16 24 N -0.93 -28.55 13.06 55.49 0.72 -27.82 16 25 Si 0.91 22.69 29.55 -169.99 -5.02 17.67 16 26 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 29 C 0.09 1.29 5.81 -3.32 -0.02 1.28 16 30 H 0.08 0.39 8.14 -51.93 -0.42 -0.03 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.33 7.69 -51.93 -0.40 -0.07 16 33 H 0.12 1.35 5.96 -51.93 -0.31 1.04 16 34 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 35 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.06 0.39 8.02 -51.93 -0.42 -0.03 16 37 H 0.16 0.91 7.89 -52.49 -0.41 0.50 16 38 H 0.14 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.16 1.41 6.00 -52.49 -0.32 1.10 16 40 H 0.12 1.15 3.11 -51.93 -0.16 0.99 16 41 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 43 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.06 1.13 7.56 -51.93 -0.39 0.74 16 45 H 0.03 0.54 6.41 -51.93 -0.33 0.21 16 46 H 0.05 1.04 8.14 -51.92 -0.42 0.62 16 47 H 0.39 10.76 7.58 -40.82 -0.31 10.45 16 48 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 49 H 0.08 1.18 6.28 -51.93 -0.33 0.86 16 50 H 0.10 1.57 7.14 -51.93 -0.37 1.19 16 LS Contribution 391.90 15.07 5.91 5.91 Total: -1.00 -33.80 391.90 -8.72 -42.52 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -7.94 Total: 9.64 kcal Atomic # 6 Polarization: 0.83 SS G_CDS: -1.06 Total: -0.24 kcal Atomic # 7 Polarization: -59.40 SS G_CDS: -0.35 Total: -59.75 kcal Atomic # 8 Polarization: -15.51 SS G_CDS: -0.25 Total: -15.76 kcal Atomic # 14 Polarization: 22.69 SS G_CDS: -5.02 Total: 17.67 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -33.80 -8.72 -42.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725320555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.027 kcal (2) G-P(sol) polarization free energy of solvation -33.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.226 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.503 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds