Wall clock time and date at job start Tue Mar 31 2020 19:34:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47108 * 2 1 4 4 N 1.46498 * 109.46923 * 119.99824 * 2 1 3 5 5 C 1.35542 * 125.67545 * 305.47931 * 4 2 1 6 6 C 1.35455 * 108.86875 * 180.02562 * 5 4 2 7 7 C 1.39839 * 107.86417 * 359.97438 * 6 5 4 8 8 C 1.37652 * 125.68024 * 125.78388 * 4 2 1 9 9 C 1.46675 * 126.22885 * 0.02562 * 8 4 2 10 10 O 1.21694 * 120.00554 * 27.34201 * 9 8 4 11 11 N 1.34781 * 119.99493 * 207.33780 * 9 8 4 12 12 C 1.47144 * 120.98221 * 7.11617 * 11 9 8 13 13 C 1.53297 * 108.38217 * 230.50699 * 12 11 9 14 14 O 1.42964 * 109.22274 * 307.69695 * 13 12 11 15 15 C 1.42960 * 114.16233 * 62.58284 * 14 13 12 16 16 H 1.09004 * 109.51626 * 57.39482 * 15 14 13 17 17 C 1.53006 * 109.50772 * 177.49139 * 15 14 13 18 18 H 1.08999 * 109.46904 * 174.99866 * 17 15 14 19 19 C 1.52999 * 109.46972 * 55.00299 * 17 15 14 20 20 N 1.46495 * 109.47119 * 294.99933 * 17 15 14 21 21 C 1.36943 * 119.99836 * 205.00117 * 20 17 15 22 22 H 1.08000 * 119.99712 * 359.97438 * 21 20 17 23 23 C 1.38813 * 120.00272 * 180.02562 * 21 20 17 24 24 N 1.31622 * 119.99502 * 0.02562 * 23 21 20 25 25 Si 1.86790 * 120.00164 * 179.97438 * 23 21 20 26 26 H 1.48497 * 109.47379 * 0.02562 * 25 23 21 27 27 H 1.48502 * 109.47112 * 120.00155 * 25 23 21 28 28 H 1.48500 * 109.47253 * 239.99736 * 25 23 21 29 29 C 1.47152 * 120.97758 * 186.82831 * 11 9 8 30 30 H 1.09002 * 109.47024 * 60.00105 * 1 2 3 31 31 H 1.08997 * 109.47187 * 179.97438 * 1 2 3 32 32 H 1.09005 * 109.47434 * 300.00296 * 1 2 3 33 33 H 1.08996 * 109.46910 * 239.99861 * 2 1 3 34 34 H 1.08994 * 109.47215 * 179.97438 * 3 2 1 35 35 H 1.09002 * 109.47092 * 299.99854 * 3 2 1 36 36 H 1.09005 * 109.47215 * 59.99569 * 3 2 1 37 37 H 1.07990 * 125.56769 * 359.97438 * 5 4 2 38 38 H 1.08000 * 126.06874 * 180.02562 * 6 5 4 39 39 H 1.07997 * 126.45435 * 179.97438 * 7 6 5 40 40 H 1.09000 * 109.68758 * 350.23021 * 12 11 9 41 41 H 1.09003 * 109.68512 * 110.79071 * 12 11 9 42 42 H 1.08996 * 109.51496 * 67.62449 * 13 12 11 43 43 H 1.09006 * 109.51211 * 187.72530 * 13 12 11 44 44 H 1.08999 * 109.46953 * 299.99538 * 19 17 15 45 45 H 1.08993 * 109.47276 * 59.99447 * 19 17 15 46 46 H 1.09007 * 109.46765 * 180.02562 * 19 17 15 47 47 H 0.96992 * 120.00739 * 25.00161 * 20 17 15 48 48 H 0.97002 * 119.99283 * 180.02562 * 24 23 21 49 49 H 1.08999 * 109.68138 * 249.21467 * 29 11 9 50 50 H 1.08993 * 109.68498 * 9.76720 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 1.6793 -0.3932 2.4744 6 6 2.3262 -1.2424 3.3081 7 6 3.0997 -2.1055 2.5257 8 6 2.9023 -1.7456 1.2095 9 6 3.5196 -2.3743 0.0368 10 8 3.6892 -1.7291 -0.9809 11 7 3.8990 -3.6666 0.0866 12 6 3.5661 -4.5097 1.2457 13 6 4.8476 -5.2019 1.7239 14 8 5.4680 -5.8605 0.6170 15 6 5.8859 -4.9798 -0.4286 16 1 6.5739 -4.2365 -0.0255 17 6 6.5879 -5.7845 -1.5244 18 1 6.8272 -5.1277 -2.3607 19 6 5.6643 -6.9058 -2.0047 20 7 7.8226 -6.3640 -0.9898 21 6 8.8550 -6.6742 -1.8342 22 1 8.7589 -6.4920 -2.8944 23 6 10.0248 -7.2238 -1.3278 24 7 10.1413 -7.4473 -0.0359 25 14 11.4328 -7.6476 -2.4797 26 1 11.0532 -7.3026 -3.8733 27 1 12.6402 -6.8756 -2.0906 28 1 11.7247 -9.1009 -2.3910 29 6 4.6528 -4.2778 -1.0196 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5139 0.8900 33 1 1.8933 -0.5138 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9564 0.8900 37 1 1.0043 0.3930 2.7785 38 1 2.2563 -1.2518 4.3858 39 1 3.7360 -2.9007 2.8851 40 1 3.1628 -3.8901 2.0467 41 1 2.8305 -5.2597 0.9551 42 1 5.5310 -4.4590 2.1351 43 1 4.6007 -5.9343 2.4925 44 1 5.4250 -7.5626 -1.1684 45 1 4.7457 -6.4746 -2.4024 46 1 6.1646 -7.4793 -2.7851 47 1 7.9088 -6.5280 -0.0377 48 1 10.9589 -7.8310 0.3180 49 1 4.0246 -5.0047 -1.5344 50 1 4.9694 -3.5045 -1.7195 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725320555.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:34:58 Heat of formation + Delta-G solvation = -19.085413 kcal Electronic energy + Delta-G solvation = -30096.373905 eV Core-core repulsion = 26124.925660 eV Total energy + Delta-G solvation = -3971.448245 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.66104 -41.06733 -39.39894 -37.24306 -36.51588 -35.63135 -34.35401 -32.16478 -30.86506 -30.43046 -29.97894 -28.35334 -28.23929 -26.42311 -24.93583 -24.41873 -23.38575 -22.37106 -21.56533 -21.04381 -19.70386 -19.27201 -18.41001 -17.75029 -17.36464 -16.91569 -16.61301 -16.38028 -16.13920 -15.97961 -15.76548 -15.50753 -15.25317 -15.08301 -14.96668 -14.50280 -14.25412 -14.01862 -13.73321 -13.63594 -13.60116 -13.47602 -13.12282 -13.09917 -13.02915 -12.87035 -12.54641 -12.45875 -12.35459 -12.27099 -12.13640 -12.07592 -11.81512 -11.65044 -11.55726 -11.23419 -10.94543 -10.92182 -9.70488 -9.66455 -9.13324 -9.00551 -7.92030 -5.20752 0.44533 1.44894 1.47659 1.48337 1.58345 1.78749 2.10506 2.18429 2.56835 2.78684 3.38875 3.42231 3.56645 3.61401 3.90740 3.92104 3.95182 4.00477 4.11441 4.12684 4.14919 4.32323 4.34266 4.37306 4.41821 4.50495 4.59144 4.60236 4.61303 4.65435 4.73847 4.78338 4.83184 4.89702 4.95437 5.01634 5.08523 5.15850 5.19356 5.20922 5.25592 5.31367 5.52027 5.61393 5.82307 6.01388 6.20309 6.24438 6.29990 6.35580 6.93288 7.35883 8.11072 8.36302 9.31737 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021325 B = 0.002531 C = 0.002447 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1312.701344 B =11062.150245 C =11441.302072 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.108 3.892 3 C -0.152 4.152 4 N -0.406 5.406 5 C 0.026 3.974 6 C -0.212 4.212 7 C -0.152 4.152 8 C -0.082 4.082 9 C 0.583 3.417 10 O -0.584 6.584 11 N -0.601 5.601 12 C 0.046 3.954 13 C 0.039 3.961 14 O -0.380 6.380 15 C 0.092 3.908 16 H 0.040 0.960 17 C 0.177 3.823 18 H 0.058 0.942 19 C -0.148 4.148 20 N -0.732 5.732 21 C -0.237 4.237 22 H 0.077 0.923 23 C -0.078 4.078 24 N -0.969 5.969 25 Si 0.972 3.028 26 H -0.266 1.266 27 H -0.295 1.295 28 H -0.294 1.294 29 C 0.097 3.903 30 H 0.091 0.909 31 H 0.052 0.948 32 H 0.083 0.917 33 H 0.085 0.915 34 H 0.039 0.961 35 H 0.091 0.909 36 H 0.081 0.919 37 H 0.199 0.801 38 H 0.167 0.833 39 H 0.164 0.836 40 H 0.144 0.856 41 H 0.087 0.913 42 H 0.049 0.951 43 H 0.132 0.868 44 H 0.046 0.954 45 H 0.069 0.931 46 H 0.038 0.962 47 H 0.376 0.624 48 H 0.250 0.750 49 H 0.094 0.906 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.390 16.229 6.937 30.922 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.007 3.993 3 C -0.209 4.209 4 N -0.079 5.079 5 C -0.109 4.109 6 C -0.235 4.235 7 C -0.178 4.178 8 C -0.195 4.195 9 C 0.375 3.625 10 O -0.466 6.466 11 N -0.333 5.333 12 C -0.075 4.075 13 C -0.038 4.038 14 O -0.299 6.299 15 C 0.032 3.968 16 H 0.058 0.942 17 C 0.068 3.932 18 H 0.076 0.924 19 C -0.208 4.208 20 N -0.372 5.372 21 C -0.369 4.369 22 H 0.095 0.905 23 C -0.270 4.270 24 N -0.620 5.620 25 Si 0.802 3.198 26 H -0.190 1.190 27 H -0.222 1.222 28 H -0.221 1.221 29 C -0.026 4.026 30 H 0.110 0.890 31 H 0.072 0.928 32 H 0.102 0.898 33 H 0.103 0.897 34 H 0.058 0.942 35 H 0.109 0.891 36 H 0.100 0.900 37 H 0.216 0.784 38 H 0.185 0.815 39 H 0.181 0.819 40 H 0.161 0.839 41 H 0.105 0.895 42 H 0.068 0.932 43 H 0.149 0.851 44 H 0.066 0.934 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.208 0.792 48 H 0.059 0.941 49 H 0.112 0.888 50 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -25.310 16.520 5.857 30.786 hybrid contribution 1.426 -0.379 -0.277 1.501 sum -23.884 16.141 5.581 29.361 Atomic orbital electron populations 1.22129 0.90983 1.02952 1.04906 1.21827 0.96801 0.94562 0.86145 1.22090 1.00817 0.93469 1.04570 1.44391 1.32249 1.23672 1.07633 1.22524 1.03810 1.03079 0.81511 1.21192 1.02737 0.99043 1.00566 1.21777 1.03390 1.02293 0.90349 1.19896 1.06233 0.98860 0.94540 1.17475 0.77658 0.81181 0.86230 1.90745 1.58264 1.63559 1.34048 1.47866 1.54968 1.09405 1.21015 1.23432 0.98371 0.95813 0.89861 1.23202 0.92875 0.98301 0.89380 1.88050 1.78487 1.33814 1.29532 1.22643 0.93545 0.91517 0.89100 0.94160 1.20413 0.86097 0.93649 0.93055 0.92411 1.22213 0.98745 0.99436 1.00381 1.42528 1.12723 1.74825 1.07165 1.19679 0.93516 1.32581 0.91147 0.90546 1.25561 1.00965 1.03063 0.97400 1.69852 1.27731 1.51793 1.12617 0.85082 0.79222 0.76939 0.78589 1.19011 1.22183 1.22084 1.22347 0.93040 0.97920 0.89330 0.88997 0.92838 0.89769 0.89727 0.94198 0.89052 0.90017 0.78372 0.81512 0.81917 0.83897 0.89487 0.93218 0.85051 0.93437 0.91251 0.94322 0.79240 0.94134 0.88835 0.89393 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 9.16 71.98 0.66 -0.95 16 2 C 0.11 1.86 3.38 44.99 0.15 2.01 16 3 C -0.15 -2.13 9.31 71.98 0.67 -1.46 16 4 N -0.41 -7.88 2.64 -488.68 -1.29 -9.16 16 5 C 0.03 0.36 10.34 83.48 0.86 1.23 16 6 C -0.21 -3.13 10.81 22.01 0.24 -2.89 16 7 C -0.15 -2.91 8.64 22.57 0.19 -2.72 16 8 C -0.08 -1.98 6.49 40.35 0.26 -1.72 16 9 C 0.58 17.41 7.46 86.45 0.65 18.06 16 10 O -0.58 -20.93 14.51 -4.33 -0.06 -20.99 16 11 N -0.60 -16.52 3.01 -821.27 -2.48 -18.99 16 12 C 0.05 0.97 6.06 86.36 0.52 1.50 16 13 C 0.04 0.96 6.94 72.08 0.50 1.46 16 14 O -0.38 -13.09 9.24 -148.98 -1.38 -14.46 16 15 C 0.09 3.27 2.62 30.83 0.08 3.35 16 16 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 17 C 0.18 7.30 2.77 44.99 0.12 7.43 16 18 H 0.06 2.38 8.08 -2.39 -0.02 2.36 16 19 C -0.15 -5.48 9.06 71.98 0.65 -4.82 16 20 N -0.73 -38.52 5.10 -322.94 -1.65 -40.16 16 21 C -0.24 -13.54 9.93 84.03 0.83 -12.70 16 22 H 0.08 4.17 7.83 -2.91 -0.02 4.15 16 23 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 24 N -0.97 -60.94 13.06 21.65 0.28 -60.66 16 25 Si 0.97 47.31 29.55 68.60 2.03 49.34 16 26 H -0.27 -12.12 7.11 99.48 0.71 -11.42 16 27 H -0.29 -14.32 7.11 99.48 0.71 -13.62 16 28 H -0.29 -14.25 7.11 99.48 0.71 -13.54 16 29 C 0.10 2.94 5.81 86.49 0.50 3.45 16 30 H 0.09 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.05 0.69 8.14 -2.39 -0.02 0.67 16 32 H 0.08 0.56 7.69 -2.38 -0.02 0.54 16 33 H 0.08 2.04 5.96 -2.39 -0.01 2.02 16 34 H 0.04 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 36 H 0.08 0.80 8.02 -2.38 -0.02 0.78 16 37 H 0.20 1.24 7.89 -2.92 -0.02 1.21 16 38 H 0.17 1.58 8.06 -2.91 -0.02 1.56 16 39 H 0.16 2.68 6.00 -2.91 -0.02 2.66 16 40 H 0.14 2.43 3.11 -2.39 -0.01 2.42 16 41 H 0.09 1.68 8.14 -2.39 -0.02 1.66 16 42 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 43 H 0.13 2.47 8.14 -2.38 -0.02 2.45 16 44 H 0.05 1.85 7.56 -2.39 -0.02 1.83 16 45 H 0.07 2.06 6.41 -2.39 -0.02 2.05 16 46 H 0.04 1.51 8.14 -2.38 -0.02 1.49 16 47 H 0.38 21.52 7.58 -92.71 -0.70 20.82 16 48 H 0.25 15.17 8.31 -92.71 -0.77 14.40 16 49 H 0.09 2.61 6.28 -2.39 -0.01 2.60 16 50 H 0.09 2.88 7.14 -2.39 -0.02 2.86 16 Total: -1.00 -75.90 391.90 3.07 -72.83 By element: Atomic # 1 Polarization: 34.93 SS G_CDS: 0.24 Total: 35.17 kcal Atomic # 6 Polarization: -0.27 SS G_CDS: 7.37 Total: 7.10 kcal Atomic # 7 Polarization: -123.85 SS G_CDS: -5.13 Total: -128.98 kcal Atomic # 8 Polarization: -34.02 SS G_CDS: -1.44 Total: -35.46 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.34 kcal Total: -75.90 3.07 -72.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725320555.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.744 kcal (2) G-P(sol) polarization free energy of solvation -75.899 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds