Wall clock time and date at job start Tue Mar 31 2020 19:35:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47004 * 2 1 4 4 N 1.46505 * 109.47087 * 120.00095 * 2 1 3 5 5 C 1.35531 * 125.67911 * 294.56647 * 4 2 1 6 6 C 1.35450 * 108.87024 * 180.02562 * 5 4 2 7 7 C 1.39842 * 107.86628 * 359.73691 * 6 5 4 8 8 C 1.37654 * 125.67489 * 114.56530 * 4 2 1 9 9 C 1.46680 * 126.23369 * 359.97438 * 8 4 2 10 10 O 1.21693 * 120.00133 * 335.43874 * 9 8 4 11 11 N 1.34780 * 119.99946 * 155.15625 * 9 8 4 12 12 C 1.47161 * 120.97914 * 353.18299 * 11 9 8 13 13 C 1.53293 * 108.38099 * 230.50877 * 12 11 9 14 14 O 1.42962 * 109.22713 * 307.69968 * 13 12 11 15 15 C 1.42965 * 114.16352 * 62.57895 * 14 13 12 16 16 H 1.08994 * 109.50938 * 57.40067 * 15 14 13 17 17 C 1.53004 * 109.50797 * 177.49873 * 15 14 13 18 18 H 1.08996 * 109.46934 * 185.00411 * 17 15 14 19 19 C 1.52997 * 109.47045 * 305.00160 * 17 15 14 20 20 N 1.46498 * 109.47364 * 64.99967 * 17 15 14 21 21 C 1.36932 * 120.00205 * 154.99548 * 20 17 15 22 22 H 1.08002 * 120.00107 * 0.02562 * 21 20 17 23 23 C 1.38809 * 120.00540 * 180.02562 * 21 20 17 24 24 N 1.31621 * 120.00409 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99639 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47304 * 89.99808 * 25 23 21 27 27 H 1.48503 * 109.47345 * 209.99702 * 25 23 21 28 28 H 1.48500 * 109.47586 * 329.99991 * 25 23 21 29 29 C 1.47151 * 120.98412 * 172.89877 * 11 9 8 30 30 H 1.08998 * 109.47196 * 299.99245 * 1 2 3 31 31 H 1.08991 * 109.47158 * 59.99822 * 1 2 3 32 32 H 1.09008 * 109.47093 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47079 * 239.99838 * 2 1 3 34 34 H 1.08991 * 109.47308 * 300.00086 * 3 2 1 35 35 H 1.09007 * 109.47079 * 60.00412 * 3 2 1 36 36 H 1.09002 * 109.47050 * 180.02562 * 3 2 1 37 37 H 1.08000 * 125.56262 * 0.02562 * 5 4 2 38 38 H 1.08005 * 126.06624 * 180.02562 * 6 5 4 39 39 H 1.07998 * 126.45482 * 180.30598 * 7 6 5 40 40 H 1.08996 * 109.68327 * 350.23215 * 12 11 9 41 41 H 1.08996 * 109.67924 * 110.78784 * 12 11 9 42 42 H 1.09004 * 109.51159 * 67.62413 * 13 12 11 43 43 H 1.09003 * 109.51088 * 187.77496 * 13 12 11 44 44 H 1.09001 * 109.47203 * 180.02562 * 19 17 15 45 45 H 1.09004 * 109.46919 * 299.99855 * 19 17 15 46 46 H 1.09000 * 109.47444 * 60.00014 * 19 17 15 47 47 H 0.97006 * 119.99830 * 335.00191 * 20 17 15 48 48 H 0.97002 * 119.99685 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.67822 * 249.21486 * 29 11 9 50 50 H 1.09002 * 109.67652 * 9.76368 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.8503 -0.2725 2.4744 6 6 2.4366 -1.1648 3.3079 7 6 2.9883 -2.1843 2.5257 8 6 2.7242 -1.8724 1.2089 9 6 3.1185 -2.6595 0.0357 10 8 2.4858 -2.5669 -0.9997 11 7 4.1848 -3.4810 0.1026 12 6 5.0566 -3.4955 1.2882 13 6 6.5100 -3.3564 0.8212 14 8 6.7801 -4.3430 -0.1776 15 6 5.9915 -4.2075 -1.3623 16 1 6.1445 -3.2167 -1.7900 17 6 6.4086 -5.2727 -2.3783 18 1 5.8705 -5.1139 -3.3128 19 6 7.9138 -5.1727 -2.6332 20 7 6.0898 -6.6018 -1.8511 21 6 5.8807 -7.6473 -2.7104 22 1 5.9512 -7.4921 -3.7769 23 6 5.5782 -8.9065 -2.2110 24 7 5.3777 -9.9115 -3.0370 25 14 5.4556 -9.1749 -0.3664 26 1 4.0585 -8.9362 0.0768 27 1 5.8461 -10.5705 -0.0421 28 1 6.3646 -8.2314 0.3327 29 6 4.5083 -4.3943 -1.0049 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.1300 1.4425 -0.0005 37 1 1.3334 0.6256 2.7786 38 1 2.4679 -1.1026 4.3857 39 1 3.5220 -3.0516 2.8852 40 1 4.8000 -2.6627 1.9428 41 1 4.9316 -4.4364 1.8241 42 1 6.6641 -2.3622 0.4019 43 1 7.1802 -3.5030 1.6683 44 1 8.2109 -5.9313 -3.3574 45 1 8.1510 -4.1838 -3.0255 46 1 8.4520 -5.3315 -1.6987 47 1 6.0268 -6.7413 -0.8932 48 1 5.1660 -10.7914 -2.6878 49 1 4.3290 -5.4241 -0.6958 50 1 3.8883 -4.1567 -1.8694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725320571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:06 Heat of formation + Delta-G solvation = 1.011907 kcal Electronic energy + Delta-G solvation = -30541.599713 eV Core-core repulsion = 26571.022953 eV Total energy + Delta-G solvation = -3970.576760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -41.81375 -39.96111 -38.19605 -36.02837 -35.49060 -34.54688 -32.29951 -30.74965 -30.11813 -29.58151 -28.86012 -27.71968 -27.48580 -24.24870 -23.64633 -23.08720 -22.58503 -21.21078 -20.57671 -19.73949 -18.80024 -17.84089 -17.41118 -16.52495 -16.25208 -15.79671 -15.58926 -15.14482 -14.91637 -14.78110 -14.53403 -14.36875 -14.18146 -13.88060 -13.57107 -13.28220 -13.02648 -12.91619 -12.79484 -12.69251 -12.57991 -12.42567 -12.39367 -12.06919 -11.75692 -11.68618 -11.53724 -11.38553 -11.28997 -10.90846 -10.83978 -10.57027 -10.27266 -10.05183 -9.93028 -9.84044 -9.53444 -8.93258 -8.91957 -8.58152 -8.28599 -7.22334 -5.73198 -3.08199 1.36342 2.34210 2.54957 3.03569 3.18206 3.41746 3.47138 3.49232 3.89336 4.27030 4.34674 4.54781 4.63721 4.72986 4.75803 4.79958 4.98312 5.06446 5.07774 5.08561 5.16237 5.19221 5.24417 5.27088 5.33542 5.41063 5.49334 5.54972 5.61300 5.62519 5.64630 5.73000 5.76019 5.85552 5.87041 6.00289 6.15085 6.23620 6.31553 6.40219 6.50671 6.61799 6.74405 6.81701 7.02493 7.08339 7.31023 7.35833 8.03205 8.06799 8.46038 9.25164 9.97342 10.18235 11.45138 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003167 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.218149 B = 8840.188995 C = 8926.809718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.111 3.889 3 C -0.161 4.161 4 N -0.401 5.401 5 C 0.014 3.986 6 C -0.208 4.208 7 C -0.152 4.152 8 C -0.043 4.043 9 C 0.587 3.413 10 O -0.547 6.547 11 N -0.600 5.600 12 C 0.051 3.949 13 C 0.048 3.952 14 O -0.364 6.364 15 C 0.075 3.925 16 H 0.061 0.939 17 C 0.188 3.812 18 H 0.069 0.931 19 C -0.160 4.160 20 N -0.743 5.743 21 C -0.242 4.242 22 H 0.091 0.909 23 C 0.006 3.994 24 N -0.934 5.934 25 Si 0.878 3.122 26 H -0.285 1.285 27 H -0.292 1.292 28 H -0.273 1.273 29 C 0.088 3.912 30 H 0.060 0.940 31 H 0.076 0.924 32 H 0.066 0.934 33 H 0.120 0.880 34 H 0.077 0.923 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.164 0.836 38 H 0.141 0.859 39 H 0.151 0.849 40 H 0.113 0.887 41 H 0.080 0.920 42 H 0.051 0.949 43 H 0.104 0.896 44 H 0.058 0.942 45 H 0.035 0.965 46 H 0.055 0.945 47 H 0.366 0.634 48 H 0.259 0.741 49 H 0.092 0.908 50 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.953 25.081 12.568 28.488 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.010 3.990 3 C -0.218 4.218 4 N -0.075 5.075 5 C -0.122 4.122 6 C -0.232 4.232 7 C -0.178 4.178 8 C -0.157 4.157 9 C 0.377 3.623 10 O -0.426 6.426 11 N -0.333 5.333 12 C -0.072 4.072 13 C -0.030 4.030 14 O -0.282 6.282 15 C 0.016 3.984 16 H 0.078 0.922 17 C 0.078 3.922 18 H 0.087 0.913 19 C -0.220 4.220 20 N -0.387 5.387 21 C -0.372 4.372 22 H 0.109 0.891 23 C -0.190 4.190 24 N -0.582 5.582 25 Si 0.708 3.292 26 H -0.212 1.212 27 H -0.218 1.218 28 H -0.199 1.199 29 C -0.034 4.034 30 H 0.079 0.921 31 H 0.095 0.905 32 H 0.085 0.915 33 H 0.138 0.862 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.181 0.819 38 H 0.159 0.841 39 H 0.168 0.832 40 H 0.131 0.869 41 H 0.098 0.902 42 H 0.069 0.931 43 H 0.122 0.878 44 H 0.077 0.923 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.200 0.800 48 H 0.069 0.931 49 H 0.110 0.890 50 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -5.311 24.995 11.467 28.008 hybrid contribution -0.302 -0.198 1.501 1.544 sum -5.613 24.797 12.968 28.541 Atomic orbital electron populations 1.22116 0.93200 1.03414 1.02780 1.21801 0.95741 0.93796 0.87646 1.22169 1.02104 0.94376 1.03176 1.44189 1.39593 1.17144 1.06555 1.21865 1.05809 1.01862 0.82617 1.20822 1.06249 0.96849 0.99250 1.21594 1.04382 1.01062 0.90800 1.20074 1.08044 0.92637 0.94933 1.17046 0.80119 0.79081 0.86072 1.90773 1.53964 1.66596 1.31273 1.47876 1.26562 1.39553 1.19298 1.23121 0.91039 1.04485 0.88512 1.22932 0.94800 0.92545 0.92753 1.88075 1.61576 1.52181 1.26415 1.23044 0.89131 0.99689 0.86529 0.92154 1.20239 0.94456 0.84126 0.93355 0.91306 1.22292 0.98424 0.99478 1.01767 1.42773 1.85457 1.05194 1.05256 1.19072 1.39862 0.87176 0.91042 0.89147 1.24633 1.01757 0.95691 0.96871 1.69700 1.54773 1.00711 1.33020 0.86626 0.77959 0.77216 0.87360 1.21185 1.21819 1.19865 1.22553 0.96755 0.93860 0.90191 0.92096 0.90539 0.91493 0.86211 0.90385 0.91839 0.91815 0.81882 0.84094 0.83191 0.86912 0.90223 0.93117 0.87839 0.92337 0.94557 0.92552 0.80044 0.93116 0.88979 0.87965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 9.31 37.16 0.35 -0.93 16 2 C 0.11 1.07 3.39 -67.93 -0.23 0.84 16 3 C -0.16 -1.10 9.16 37.16 0.34 -0.76 16 4 N -0.40 -4.36 2.64 -105.81 -0.28 -4.63 16 5 C 0.01 0.12 10.34 -16.91 -0.17 -0.05 16 6 C -0.21 -1.92 10.81 -39.98 -0.43 -2.35 16 7 C -0.15 -1.65 8.48 -39.12 -0.33 -1.98 16 8 C -0.04 -0.55 6.43 -81.98 -0.53 -1.08 16 9 C 0.59 9.05 7.51 -12.85 -0.10 8.95 16 10 O -0.55 -9.85 14.35 5.19 0.07 -9.78 16 11 N -0.60 -8.81 3.01 -173.56 -0.52 -9.33 16 12 C 0.05 0.59 5.21 -3.53 -0.02 0.57 16 13 C 0.05 0.56 6.98 37.31 0.26 0.82 16 14 O -0.36 -5.80 9.24 -35.23 -0.33 -6.12 16 15 C 0.08 1.23 2.59 -26.36 -0.07 1.16 16 16 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 17 C 0.19 3.61 2.81 -67.93 -0.19 3.42 16 18 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 19 C -0.16 -2.87 9.29 37.16 0.35 -2.53 16 20 N -0.74 -17.42 4.05 -53.43 -0.22 -17.63 16 21 C -0.24 -6.75 10.41 -15.06 -0.16 -6.91 16 22 H 0.09 2.69 8.06 -52.49 -0.42 2.27 16 23 C 0.01 0.18 5.50 -17.43 -0.10 0.09 16 24 N -0.93 -29.49 13.97 55.49 0.78 -28.71 16 25 Si 0.88 22.35 27.74 -169.99 -4.71 17.64 16 26 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 27 H -0.29 -7.54 7.11 56.52 0.40 -7.14 16 28 H -0.27 -6.62 6.52 56.52 0.37 -6.25 16 29 C 0.09 1.49 5.85 -3.32 -0.02 1.47 16 30 H 0.06 0.41 8.02 -51.93 -0.42 -0.01 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.68 8.14 -51.92 -0.42 0.25 16 33 H 0.12 1.47 5.86 -51.93 -0.30 1.16 16 34 H 0.08 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.06 0.35 7.69 -51.92 -0.40 -0.04 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.16 0.96 7.89 -52.49 -0.41 0.54 16 38 H 0.14 0.99 8.06 -52.48 -0.42 0.56 16 39 H 0.15 1.42 6.08 -52.49 -0.32 1.10 16 40 H 0.11 1.08 4.28 -51.93 -0.22 0.86 16 41 H 0.08 0.92 8.13 -51.93 -0.42 0.50 16 42 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 43 H 0.10 0.97 8.14 -51.93 -0.42 0.54 16 44 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.04 0.55 8.14 -51.93 -0.42 0.13 16 46 H 0.06 1.04 7.56 -51.93 -0.39 0.65 16 47 H 0.37 8.66 4.93 -40.82 -0.20 8.46 16 48 H 0.26 7.81 8.31 -40.82 -0.34 7.47 16 49 H 0.09 1.77 6.94 -51.93 -0.36 1.41 16 50 H 0.10 1.83 7.06 -51.93 -0.37 1.46 16 LS Contribution 390.02 15.07 5.88 5.88 Total: -1.00 -34.01 390.02 -8.44 -42.45 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -8.06 Total: 9.51 kcal Atomic # 6 Polarization: 1.79 SS G_CDS: -1.05 Total: 0.74 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.24 Total: -60.32 kcal Atomic # 8 Polarization: -15.65 SS G_CDS: -0.25 Total: -15.90 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 5.88 Total: 5.88 kcal Total: -34.01 -8.44 -42.45 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725320571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.463 kcal (2) G-P(sol) polarization free energy of solvation -34.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.451 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.451 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds