Wall clock time and date at job start Tue Mar 31 2020 19:35:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52996 * 109.47004 * 2 1 4 4 N 1.46505 * 109.47087 * 120.00095 * 2 1 3 5 5 C 1.35531 * 125.67911 * 294.56647 * 4 2 1 6 6 C 1.35450 * 108.87024 * 180.02562 * 5 4 2 7 7 C 1.39842 * 107.86628 * 359.73691 * 6 5 4 8 8 C 1.37654 * 125.67489 * 114.56530 * 4 2 1 9 9 C 1.46680 * 126.23369 * 359.97438 * 8 4 2 10 10 O 1.21693 * 120.00133 * 335.43874 * 9 8 4 11 11 N 1.34780 * 119.99946 * 155.15625 * 9 8 4 12 12 C 1.47161 * 120.97914 * 353.18299 * 11 9 8 13 13 C 1.53293 * 108.38099 * 230.50877 * 12 11 9 14 14 O 1.42962 * 109.22713 * 307.69968 * 13 12 11 15 15 C 1.42965 * 114.16352 * 62.57895 * 14 13 12 16 16 H 1.08994 * 109.50938 * 57.40067 * 15 14 13 17 17 C 1.53004 * 109.50797 * 177.49873 * 15 14 13 18 18 H 1.08996 * 109.46934 * 185.00411 * 17 15 14 19 19 C 1.52997 * 109.47045 * 305.00160 * 17 15 14 20 20 N 1.46498 * 109.47364 * 64.99967 * 17 15 14 21 21 C 1.36932 * 120.00205 * 154.99548 * 20 17 15 22 22 H 1.08002 * 120.00107 * 0.02562 * 21 20 17 23 23 C 1.38809 * 120.00540 * 180.02562 * 21 20 17 24 24 N 1.31621 * 120.00409 * 180.02562 * 23 21 20 25 25 Si 1.86800 * 119.99639 * 0.02562 * 23 21 20 26 26 H 1.48501 * 109.47304 * 89.99808 * 25 23 21 27 27 H 1.48503 * 109.47345 * 209.99702 * 25 23 21 28 28 H 1.48500 * 109.47586 * 329.99991 * 25 23 21 29 29 C 1.47151 * 120.98412 * 172.89877 * 11 9 8 30 30 H 1.08998 * 109.47196 * 299.99245 * 1 2 3 31 31 H 1.08991 * 109.47158 * 59.99822 * 1 2 3 32 32 H 1.09008 * 109.47093 * 179.97438 * 1 2 3 33 33 H 1.09003 * 109.47079 * 239.99838 * 2 1 3 34 34 H 1.08991 * 109.47308 * 300.00086 * 3 2 1 35 35 H 1.09007 * 109.47079 * 60.00412 * 3 2 1 36 36 H 1.09002 * 109.47050 * 180.02562 * 3 2 1 37 37 H 1.08000 * 125.56262 * 0.02562 * 5 4 2 38 38 H 1.08005 * 126.06624 * 180.02562 * 6 5 4 39 39 H 1.07998 * 126.45482 * 180.30598 * 7 6 5 40 40 H 1.08996 * 109.68327 * 350.23215 * 12 11 9 41 41 H 1.08996 * 109.67924 * 110.78784 * 12 11 9 42 42 H 1.09004 * 109.51159 * 67.62413 * 13 12 11 43 43 H 1.09003 * 109.51088 * 187.77496 * 13 12 11 44 44 H 1.09001 * 109.47203 * 180.02562 * 19 17 15 45 45 H 1.09004 * 109.46919 * 299.99855 * 19 17 15 46 46 H 1.09000 * 109.47444 * 60.00014 * 19 17 15 47 47 H 0.97006 * 119.99830 * 335.00191 * 20 17 15 48 48 H 0.97002 * 119.99685 * 180.02562 * 24 23 21 49 49 H 1.09003 * 109.67822 * 249.21486 * 29 11 9 50 50 H 1.09002 * 109.67652 * 9.76368 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6907 1.1962 5 6 1.8503 -0.2725 2.4744 6 6 2.4366 -1.1648 3.3079 7 6 2.9883 -2.1843 2.5257 8 6 2.7242 -1.8724 1.2089 9 6 3.1185 -2.6595 0.0357 10 8 2.4858 -2.5669 -0.9997 11 7 4.1848 -3.4810 0.1026 12 6 5.0566 -3.4955 1.2882 13 6 6.5100 -3.3564 0.8212 14 8 6.7801 -4.3430 -0.1776 15 6 5.9915 -4.2075 -1.3623 16 1 6.1445 -3.2167 -1.7900 17 6 6.4086 -5.2727 -2.3783 18 1 5.8705 -5.1139 -3.3128 19 6 7.9138 -5.1727 -2.6332 20 7 6.0898 -6.6018 -1.8511 21 6 5.8807 -7.6473 -2.7104 22 1 5.9512 -7.4921 -3.7769 23 6 5.5782 -8.9065 -2.2110 24 7 5.3777 -9.9115 -3.0370 25 14 5.4556 -9.1749 -0.3664 26 1 4.0585 -8.9362 0.0768 27 1 5.8461 -10.5705 -0.0421 28 1 6.3646 -8.2314 0.3327 29 6 4.5083 -4.3943 -1.0049 30 1 -0.3633 0.5137 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 1.6767 1.9563 -0.8899 35 1 1.6767 1.9563 0.8901 36 1 3.1300 1.4425 -0.0005 37 1 1.3334 0.6256 2.7786 38 1 2.4679 -1.1026 4.3857 39 1 3.5220 -3.0516 2.8852 40 1 4.8000 -2.6627 1.9428 41 1 4.9316 -4.4364 1.8241 42 1 6.6641 -2.3622 0.4019 43 1 7.1802 -3.5030 1.6683 44 1 8.2109 -5.9313 -3.3574 45 1 8.1510 -4.1838 -3.0255 46 1 8.4520 -5.3315 -1.6987 47 1 6.0268 -6.7413 -0.8932 48 1 5.1660 -10.7914 -2.6878 49 1 4.3290 -5.4241 -0.6958 50 1 3.8883 -4.1567 -1.8694 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725320571.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:05 Heat of formation + Delta-G solvation = -20.978639 kcal Electronic energy + Delta-G solvation = -30542.553295 eV Core-core repulsion = 26571.022953 eV Total energy + Delta-G solvation = -3971.530342 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.64519 -41.08952 -39.42167 -37.34715 -36.56834 -35.68101 -34.24147 -32.21897 -30.89721 -30.84461 -30.18875 -28.64904 -28.27357 -25.76870 -24.95304 -24.48084 -23.37679 -22.27968 -21.48694 -21.23454 -19.92883 -19.58774 -18.39344 -17.74829 -17.39378 -16.97606 -16.69607 -16.29508 -16.15247 -15.98054 -15.63097 -15.53595 -15.22552 -15.00263 -14.87374 -14.62725 -14.35941 -14.25870 -13.81885 -13.66142 -13.60673 -13.42488 -13.31497 -13.13150 -13.05355 -12.87067 -12.65897 -12.54338 -12.49992 -12.32895 -12.11493 -12.08761 -11.81562 -11.76152 -11.55388 -11.17192 -11.01864 -10.98168 -9.74987 -9.67116 -9.29665 -9.12938 -8.00705 -5.32577 0.44823 1.37439 1.39087 1.44397 1.47454 1.79975 2.10477 2.18641 2.49164 2.72901 3.32127 3.38979 3.52174 3.60884 3.73571 3.89707 3.91311 3.96207 4.10044 4.11580 4.14347 4.20510 4.33156 4.38664 4.44871 4.47673 4.57848 4.59741 4.64554 4.72503 4.72931 4.76240 4.79284 4.88781 4.93244 5.00170 5.02214 5.14439 5.18373 5.19908 5.23903 5.29157 5.56916 5.78953 5.82978 6.01145 6.16390 6.22194 6.25430 6.35593 6.94226 7.09779 7.85585 8.06166 9.21024 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015787 B = 0.003167 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1773.218149 B = 8840.188995 C = 8926.809718 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.106 3.894 3 C -0.152 4.152 4 N -0.406 5.406 5 C 0.027 3.973 6 C -0.213 4.213 7 C -0.146 4.146 8 C -0.084 4.084 9 C 0.581 3.419 10 O -0.587 6.587 11 N -0.601 5.601 12 C 0.051 3.949 13 C 0.044 3.956 14 O -0.382 6.382 15 C 0.093 3.907 16 H 0.079 0.921 17 C 0.178 3.822 18 H 0.061 0.939 19 C -0.148 4.148 20 N -0.743 5.743 21 C -0.222 4.222 22 H 0.060 0.940 23 C -0.062 4.062 24 N -0.985 5.985 25 Si 0.947 3.053 26 H -0.283 1.283 27 H -0.296 1.296 28 H -0.251 1.251 29 C 0.094 3.906 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.084 0.916 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.052 0.948 37 H 0.199 0.801 38 H 0.168 0.832 39 H 0.161 0.839 40 H 0.137 0.863 41 H 0.082 0.918 42 H 0.062 0.938 43 H 0.135 0.865 44 H 0.035 0.965 45 H 0.069 0.931 46 H 0.054 0.946 47 H 0.367 0.633 48 H 0.256 0.744 49 H 0.066 0.934 50 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.710 28.466 16.224 33.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.005 3.995 3 C -0.209 4.209 4 N -0.080 5.080 5 C -0.108 4.108 6 C -0.237 4.237 7 C -0.172 4.172 8 C -0.197 4.197 9 C 0.372 3.628 10 O -0.470 6.470 11 N -0.333 5.333 12 C -0.071 4.071 13 C -0.033 4.033 14 O -0.301 6.301 15 C 0.034 3.966 16 H 0.097 0.903 17 C 0.070 3.930 18 H 0.079 0.921 19 C -0.208 4.208 20 N -0.387 5.387 21 C -0.353 4.353 22 H 0.078 0.922 23 C -0.254 4.254 24 N -0.636 5.636 25 Si 0.774 3.226 26 H -0.210 1.210 27 H -0.223 1.223 28 H -0.176 1.176 29 C -0.029 4.029 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.102 0.898 34 H 0.109 0.891 35 H 0.103 0.897 36 H 0.072 0.928 37 H 0.216 0.784 38 H 0.185 0.815 39 H 0.178 0.822 40 H 0.154 0.846 41 H 0.100 0.900 42 H 0.080 0.920 43 H 0.153 0.847 44 H 0.054 0.946 45 H 0.087 0.913 46 H 0.073 0.927 47 H 0.201 0.799 48 H 0.065 0.935 49 H 0.084 0.916 50 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.029 28.442 15.152 32.616 hybrid contribution -0.415 -1.107 0.347 1.232 sum -5.444 27.335 15.499 31.891 Atomic orbital electron populations 1.22085 0.92172 1.02088 1.04565 1.21840 0.96530 0.94858 0.86269 1.22121 1.01383 0.92522 1.04877 1.44381 1.39310 1.16707 1.07602 1.22536 1.04307 1.02476 0.81504 1.21183 1.05817 0.96124 1.00537 1.21840 1.03700 1.01574 0.90106 1.19864 1.11109 0.94238 0.94463 1.17537 0.79661 0.79049 0.86524 1.90744 1.55233 1.67953 1.33069 1.47910 1.27005 1.38870 1.19516 1.23343 0.90488 1.05607 0.87614 1.23244 0.95289 0.92127 0.92631 1.88031 1.61375 1.53955 1.26728 1.22678 0.88384 0.99007 0.86565 0.90290 1.20461 0.95393 0.83018 0.94122 0.92125 1.22124 0.96807 1.00679 1.01167 1.42720 1.85548 1.05765 1.04709 1.19039 1.37552 0.88333 0.90389 0.92208 1.25393 1.02759 0.95558 1.01661 1.69874 1.57235 1.01200 1.35249 0.85521 0.78230 0.77045 0.81755 1.20981 1.22277 1.17578 1.22229 0.97139 0.93030 0.90499 0.89910 0.89144 0.94294 0.89752 0.89103 0.89696 0.92835 0.78397 0.81477 0.82154 0.84601 0.89982 0.91996 0.84733 0.94560 0.91258 0.92684 0.79886 0.93490 0.91597 0.89961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.31 71.98 0.67 -1.60 16 2 C 0.11 1.95 3.39 44.99 0.15 2.10 16 3 C -0.15 -1.73 9.16 71.98 0.66 -1.07 16 4 N -0.41 -8.13 2.64 -488.66 -1.29 -9.42 16 5 C 0.03 0.38 10.34 83.48 0.86 1.25 16 6 C -0.21 -3.11 10.81 22.01 0.24 -2.87 16 7 C -0.15 -2.79 8.48 22.57 0.19 -2.59 16 8 C -0.08 -2.07 6.43 40.35 0.26 -1.81 16 9 C 0.58 18.22 7.51 86.45 0.65 18.87 16 10 O -0.59 -22.43 14.35 -4.33 -0.06 -22.49 16 11 N -0.60 -17.50 3.01 -821.23 -2.48 -19.98 16 12 C 0.05 1.07 5.21 86.35 0.45 1.52 16 13 C 0.04 0.89 6.98 72.08 0.50 1.39 16 14 O -0.38 -11.33 9.24 -148.98 -1.38 -12.71 16 15 C 0.09 2.97 2.59 30.83 0.08 3.05 16 16 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 17 C 0.18 6.87 2.81 44.99 0.13 7.00 16 18 H 0.06 2.43 8.08 -2.39 -0.02 2.41 16 19 C -0.15 -5.20 9.29 71.98 0.67 -4.53 16 20 N -0.74 -35.21 4.05 -322.95 -1.31 -36.52 16 21 C -0.22 -12.80 10.41 84.03 0.87 -11.93 16 22 H 0.06 3.75 8.06 -2.91 -0.02 3.73 16 23 C -0.06 -3.76 5.50 84.86 0.47 -3.30 16 24 N -0.98 -64.42 13.97 21.65 0.30 -64.11 16 25 Si 0.95 47.02 27.74 68.60 1.90 48.92 16 26 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 27 H -0.30 -14.83 7.11 99.48 0.71 -14.12 16 28 H -0.25 -11.43 6.52 99.48 0.65 -10.79 16 29 C 0.09 3.26 5.85 86.49 0.51 3.77 16 30 H 0.08 0.86 8.02 -2.39 -0.02 0.84 16 31 H 0.09 1.07 8.14 -2.39 -0.02 1.05 16 32 H 0.04 0.79 8.14 -2.38 -0.02 0.77 16 33 H 0.08 2.17 5.86 -2.39 -0.01 2.16 16 34 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.08 0.61 7.69 -2.38 -0.02 0.59 16 36 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.20 1.27 7.89 -2.91 -0.02 1.24 16 38 H 0.17 1.53 8.06 -2.91 -0.02 1.50 16 39 H 0.16 2.59 6.08 -2.91 -0.02 2.57 16 40 H 0.14 2.22 4.28 -2.39 -0.01 2.21 16 41 H 0.08 1.70 8.13 -2.39 -0.02 1.68 16 42 H 0.06 1.15 8.14 -2.38 -0.02 1.13 16 43 H 0.13 1.93 8.14 -2.39 -0.02 1.91 16 44 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.07 1.96 8.14 -2.38 -0.02 1.94 16 46 H 0.05 1.94 7.56 -2.39 -0.02 1.93 16 47 H 0.37 17.19 4.93 -92.70 -0.46 16.73 16 48 H 0.26 16.03 8.31 -92.71 -0.77 15.26 16 49 H 0.07 2.61 6.94 -2.39 -0.02 2.60 16 50 H 0.08 3.14 7.06 -2.39 -0.02 3.12 16 Total: -1.00 -78.14 390.02 3.47 -74.67 By element: Atomic # 1 Polarization: 31.99 SS G_CDS: 0.42 Total: 32.41 kcal Atomic # 6 Polarization: 1.87 SS G_CDS: 7.36 Total: 9.23 kcal Atomic # 7 Polarization: -125.27 SS G_CDS: -4.77 Total: -130.03 kcal Atomic # 8 Polarization: -33.75 SS G_CDS: -1.44 Total: -35.19 kcal Atomic # 14 Polarization: 47.02 SS G_CDS: 1.90 Total: 48.92 kcal Total: -78.14 3.47 -74.67 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725320571.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.688 kcal (2) G-P(sol) polarization free energy of solvation -78.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.453 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.667 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds