Wall clock time and date at job start Tue Mar 31 2020 19:35:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47049 * 2 1 4 4 N 1.46504 * 109.47262 * 240.00201 * 2 1 3 5 5 C 1.35535 * 125.67684 * 65.76459 * 4 2 1 6 6 C 1.35453 * 108.87353 * 179.97438 * 5 4 2 7 7 C 1.39843 * 107.86369 * 0.02562 * 6 5 4 8 8 C 1.37647 * 125.67756 * 245.45849 * 4 2 1 9 9 C 1.46676 * 126.23631 * 0.02562 * 8 4 2 10 10 O 1.21697 * 119.99665 * 19.50056 * 9 8 4 11 11 N 1.34765 * 120.00320 * 199.49354 * 9 8 4 12 12 C 1.47155 * 120.98184 * 5.83990 * 11 9 8 13 13 C 1.53715 * 108.16166 * 129.43048 * 12 11 9 14 14 O 1.42959 * 109.15082 * 52.53616 * 13 12 11 15 15 C 1.42960 * 114.16871 * 297.29076 * 14 13 12 16 16 H 1.09001 * 109.51317 * 302.65665 * 15 14 13 17 17 C 1.53000 * 109.51416 * 182.50431 * 15 14 13 18 18 H 1.09003 * 109.46819 * 180.25429 * 17 15 14 19 19 C 1.52993 * 109.47200 * 60.25312 * 17 15 14 20 20 N 1.46499 * 109.46868 * 300.24816 * 17 15 14 21 21 C 1.36937 * 120.00221 * 204.99812 * 20 17 15 22 22 H 1.08001 * 119.99488 * 0.02562 * 21 20 17 23 23 C 1.38807 * 120.00245 * 180.02562 * 21 20 17 24 24 N 1.31620 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00106 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47089 * 59.99925 * 25 23 21 27 27 H 1.48494 * 109.47122 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46870 * 300.00080 * 25 23 21 29 29 C 1.47161 * 120.98512 * 186.11595 * 11 9 8 30 30 H 1.09000 * 109.47231 * 60.00262 * 1 2 3 31 31 H 1.09001 * 109.47294 * 299.99770 * 1 2 3 32 32 H 1.09006 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47579 * 120.00155 * 2 1 3 34 34 H 1.09002 * 109.47235 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46890 * 299.99947 * 3 2 1 36 36 H 1.08994 * 109.47312 * 60.00493 * 3 2 1 37 37 H 1.08002 * 125.56604 * 359.97438 * 5 4 2 38 38 H 1.07992 * 126.07090 * 179.97438 * 6 5 4 39 39 H 1.07999 * 126.45765 * 180.02562 * 7 6 5 40 40 H 1.09003 * 109.68165 * 249.20251 * 12 11 9 41 41 H 1.08999 * 109.68257 * 9.76091 * 12 11 9 42 42 H 1.09000 * 109.65872 * 292.57077 * 13 12 11 43 43 H 1.09003 * 109.48521 * 172.40234 * 13 12 11 44 44 H 1.08998 * 109.47645 * 59.99890 * 19 17 15 45 45 H 1.09002 * 109.47023 * 179.97438 * 19 17 15 46 46 H 1.09003 * 109.47330 * 299.99804 * 19 17 15 47 47 H 0.97003 * 120.00020 * 25.01033 * 20 17 15 48 48 H 0.96999 * 120.00319 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.67824 * 350.23915 * 29 11 9 50 50 H 1.09000 * 109.68129 * 110.79350 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.8558 -0.2690 -2.4740 6 6 2.4401 -1.1624 -3.3078 7 6 2.9896 -2.1832 -2.5258 8 6 2.7238 -1.8725 -1.2091 9 6 3.1176 -2.6600 -0.0360 10 8 2.5433 -2.4999 1.0250 11 7 4.1151 -3.5609 -0.1331 12 6 4.9081 -3.6831 -1.3666 13 6 6.3966 -3.6346 -0.9860 14 8 6.6525 -4.6058 0.0314 15 6 5.9474 -4.3733 1.2531 16 1 6.1966 -3.3831 1.6345 17 6 6.3449 -5.4334 2.2822 18 1 5.8035 -5.2581 3.2119 19 6 7.8498 -5.3502 2.5449 20 7 6.0118 -6.7636 1.7666 21 6 5.7844 -7.7975 2.6352 22 1 5.8502 -7.6321 3.7005 23 6 5.4694 -9.0579 2.1467 24 7 5.3897 -9.2596 0.8485 25 14 5.1585 -10.4681 3.3317 26 1 4.0139 -10.1293 4.2149 27 1 4.8444 -11.6998 2.5639 28 1 6.3709 -10.6964 4.1583 29 6 4.4396 -4.4558 0.9892 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.3439 0.6321 -2.7779 38 1 2.4746 -1.0983 -4.3853 39 1 3.5258 -3.0491 -2.8853 40 1 4.6822 -4.6305 -1.8560 41 1 4.6726 -2.8572 -2.0378 42 1 6.6476 -2.6417 -0.6128 43 1 7.0037 -3.8578 -1.8634 44 1 8.0976 -4.3605 2.9285 45 1 8.1329 -6.1051 3.2784 46 1 8.3912 -5.5255 1.6152 47 1 5.9526 -6.9120 0.8098 48 1 5.1699 -10.1405 0.5070 49 1 3.8935 -4.1418 1.8787 50 1 4.1673 -5.4796 0.7329 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725320574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:09 Heat of formation + Delta-G solvation = 3.197451 kcal Electronic energy + Delta-G solvation = -30389.819417 eV Core-core repulsion = 26419.337429 eV Total energy + Delta-G solvation = -3970.481988 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.75145 -39.81913 -38.05760 -35.96303 -35.29963 -34.39602 -32.29188 -30.61066 -30.04896 -29.32525 -28.35539 -27.66766 -27.37956 -24.19653 -23.61210 -23.25314 -22.52081 -21.10930 -20.52168 -19.64753 -18.73039 -17.48839 -17.14682 -16.40828 -16.07213 -15.71304 -15.48706 -15.06488 -14.87537 -14.64200 -14.51195 -14.23642 -14.04943 -13.79962 -13.34840 -13.17081 -13.08657 -12.90637 -12.75339 -12.68078 -12.53338 -12.37323 -12.20308 -11.86228 -11.65720 -11.41289 -11.33835 -11.23281 -11.11530 -10.78917 -10.74973 -10.42426 -10.26340 -10.00327 -9.83832 -9.68465 -9.53285 -8.88587 -8.85035 -8.47822 -8.17527 -6.88985 -5.70226 -2.98653 1.42646 2.43373 2.61650 3.15330 3.30267 3.48064 3.52594 3.53234 4.05905 4.33220 4.44839 4.60593 4.63940 4.79979 4.84760 4.91677 5.11893 5.12586 5.14676 5.18190 5.25725 5.31301 5.35589 5.39785 5.46404 5.54279 5.54959 5.65411 5.68002 5.77235 5.80406 5.85189 5.89056 5.93403 6.01513 6.09274 6.24955 6.38869 6.44265 6.55638 6.68502 6.71637 6.81630 6.88664 7.09614 7.17026 7.44266 7.53463 7.75136 8.17684 8.48113 9.60254 10.17490 10.54949 11.51956 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002909 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.723085 B = 9622.429685 C = 9905.997825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.109 3.891 3 C -0.160 4.160 4 N -0.401 5.401 5 C 0.012 3.988 6 C -0.208 4.208 7 C -0.158 4.158 8 C -0.042 4.042 9 C 0.586 3.414 10 O -0.552 6.552 11 N -0.596 5.596 12 C 0.042 3.958 13 C 0.048 3.952 14 O -0.359 6.359 15 C 0.080 3.920 16 H 0.054 0.946 17 C 0.183 3.817 18 H 0.059 0.941 19 C -0.160 4.160 20 N -0.717 5.717 21 C -0.239 4.239 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.930 5.930 25 Si 0.905 3.095 26 H -0.287 1.287 27 H -0.292 1.292 28 H -0.287 1.287 29 C 0.088 3.912 30 H 0.059 0.941 31 H 0.075 0.925 32 H 0.065 0.935 33 H 0.124 0.876 34 H 0.063 0.937 35 H 0.062 0.938 36 H 0.077 0.923 37 H 0.163 0.837 38 H 0.141 0.859 39 H 0.158 0.842 40 H 0.083 0.917 41 H 0.119 0.881 42 H 0.048 0.952 43 H 0.103 0.897 44 H 0.032 0.968 45 H 0.053 0.947 46 H 0.056 0.944 47 H 0.390 0.610 48 H 0.255 0.745 49 H 0.096 0.904 50 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.163 22.917 -8.084 24.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.008 3.992 3 C -0.218 4.218 4 N -0.075 5.075 5 C -0.123 4.123 6 C -0.232 4.232 7 C -0.183 4.183 8 C -0.155 4.155 9 C 0.376 3.624 10 O -0.433 6.433 11 N -0.328 5.328 12 C -0.080 4.080 13 C -0.030 4.030 14 O -0.277 6.277 15 C 0.020 3.980 16 H 0.072 0.928 17 C 0.072 3.928 18 H 0.077 0.923 19 C -0.220 4.220 20 N -0.359 5.359 21 C -0.371 4.371 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.578 5.578 25 Si 0.736 3.264 26 H -0.213 1.213 27 H -0.218 1.218 28 H -0.214 1.214 29 C -0.034 4.034 30 H 0.079 0.921 31 H 0.094 0.906 32 H 0.084 0.916 33 H 0.141 0.859 34 H 0.082 0.918 35 H 0.081 0.919 36 H 0.096 0.904 37 H 0.181 0.819 38 H 0.159 0.841 39 H 0.175 0.825 40 H 0.102 0.898 41 H 0.136 0.864 42 H 0.066 0.934 43 H 0.121 0.879 44 H 0.051 0.949 45 H 0.072 0.928 46 H 0.075 0.925 47 H 0.225 0.775 48 H 0.064 0.936 49 H 0.115 0.885 50 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -5.504 22.876 -7.052 24.563 hybrid contribution -0.357 -0.690 0.145 0.790 sum -5.861 22.186 -6.907 23.964 Atomic orbital electron populations 1.22114 0.93308 1.03343 1.02713 1.21843 0.95651 0.93822 0.87877 1.22164 1.02107 0.94435 1.03082 1.44180 1.39666 1.17077 1.06532 1.21864 1.05954 1.01777 0.82690 1.20838 1.06241 0.96844 0.99250 1.21792 1.04311 1.01332 0.90909 1.20084 1.07943 0.92564 0.94949 1.17022 0.79713 0.79323 0.86346 1.90743 1.54851 1.67991 1.29677 1.47834 1.32595 1.36180 1.16189 1.23456 0.92209 1.04745 0.87592 1.22992 0.94417 0.92816 0.92746 1.88097 1.67361 1.49666 1.22591 1.22897 0.90037 0.99006 0.86048 0.92835 1.20252 0.93981 0.85546 0.93039 0.92293 1.22349 0.99047 0.98998 1.01643 1.42379 1.83163 1.03579 1.06828 1.19196 1.39570 0.88701 0.89590 0.91300 1.24709 1.02751 0.97556 0.95747 1.69661 1.55262 1.22236 1.10680 0.86309 0.77980 0.82174 0.79959 1.21332 1.21796 1.21373 1.22486 0.96479 0.94813 0.89593 0.92146 0.90596 0.91550 0.85869 0.91825 0.91910 0.90449 0.81945 0.84096 0.82462 0.89831 0.86377 0.93400 0.87916 0.94911 0.92769 0.92526 0.77483 0.93558 0.88546 0.88259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 9.31 37.16 0.35 -0.99 16 2 C 0.11 1.10 3.40 -67.93 -0.23 0.87 16 3 C -0.16 -1.18 9.15 37.16 0.34 -0.84 16 4 N -0.40 -4.58 2.64 -105.81 -0.28 -4.86 16 5 C 0.01 0.11 10.34 -16.91 -0.17 -0.06 16 6 C -0.21 -2.02 10.81 -39.98 -0.43 -2.46 16 7 C -0.16 -1.80 8.58 -39.11 -0.34 -2.13 16 8 C -0.04 -0.56 6.58 -81.98 -0.54 -1.10 16 9 C 0.59 9.46 7.58 -12.86 -0.10 9.36 16 10 O -0.55 -10.25 14.16 5.19 0.07 -10.18 16 11 N -0.60 -9.30 3.01 -173.55 -0.52 -9.82 16 12 C 0.04 0.54 5.29 -3.31 -0.02 0.52 16 13 C 0.05 0.62 7.00 37.53 0.26 0.89 16 14 O -0.36 -6.23 9.22 -35.23 -0.32 -6.56 16 15 C 0.08 1.39 2.53 -26.58 -0.07 1.32 16 16 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 17 C 0.18 3.68 2.73 -67.93 -0.19 3.49 16 18 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 19 C -0.16 -3.01 9.35 37.15 0.35 -2.66 16 20 N -0.72 -17.85 4.29 -53.43 -0.23 -18.08 16 21 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.43 16 24 N -0.93 -28.11 13.06 55.49 0.72 -27.39 16 25 Si 0.90 22.56 29.55 -169.99 -5.02 17.54 16 26 H -0.29 -7.05 7.11 56.52 0.40 -6.65 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 28 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 29 C 0.09 1.58 5.88 -3.53 -0.02 1.56 16 30 H 0.06 0.43 8.03 -51.93 -0.42 0.01 16 31 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 33 H 0.12 1.58 5.71 -51.93 -0.30 1.28 16 34 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.06 0.38 7.67 -51.93 -0.40 -0.02 16 36 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.16 1.03 7.88 -52.49 -0.41 0.62 16 38 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.16 1.58 5.55 -52.49 -0.29 1.29 16 40 H 0.08 1.09 8.14 -51.93 -0.42 0.66 16 41 H 0.12 1.23 3.81 -51.93 -0.20 1.04 16 42 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 43 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 45 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 46 H 0.06 1.11 7.69 -51.93 -0.40 0.71 16 47 H 0.39 10.49 7.20 -40.82 -0.29 10.19 16 48 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.10 1.80 7.06 -51.93 -0.37 1.43 16 50 H 0.10 2.09 7.27 -51.93 -0.38 1.71 16 LS Contribution 392.78 15.07 5.92 5.92 Total: -1.00 -32.91 392.78 -8.78 -41.69 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -8.07 Total: 11.15 kcal Atomic # 6 Polarization: 1.64 SS G_CDS: -1.05 Total: 0.59 kcal Atomic # 7 Polarization: -59.85 SS G_CDS: -0.31 Total: -60.15 kcal Atomic # 8 Polarization: -16.48 SS G_CDS: -0.25 Total: -16.73 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.92 Total: 5.92 kcal Total: -32.91 -8.78 -41.69 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725320574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.885 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.688 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds