Wall clock time and date at job start Tue Mar 31 2020 19:35:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53000 * 109.47049 * 2 1 4 4 N 1.46504 * 109.47262 * 240.00201 * 2 1 3 5 5 C 1.35535 * 125.67684 * 65.76459 * 4 2 1 6 6 C 1.35453 * 108.87353 * 179.97438 * 5 4 2 7 7 C 1.39843 * 107.86369 * 0.02562 * 6 5 4 8 8 C 1.37647 * 125.67756 * 245.45849 * 4 2 1 9 9 C 1.46676 * 126.23631 * 0.02562 * 8 4 2 10 10 O 1.21697 * 119.99665 * 19.50056 * 9 8 4 11 11 N 1.34765 * 120.00320 * 199.49354 * 9 8 4 12 12 C 1.47155 * 120.98184 * 5.83990 * 11 9 8 13 13 C 1.53715 * 108.16166 * 129.43048 * 12 11 9 14 14 O 1.42959 * 109.15082 * 52.53616 * 13 12 11 15 15 C 1.42960 * 114.16871 * 297.29076 * 14 13 12 16 16 H 1.09001 * 109.51317 * 302.65665 * 15 14 13 17 17 C 1.53000 * 109.51416 * 182.50431 * 15 14 13 18 18 H 1.09003 * 109.46819 * 180.25429 * 17 15 14 19 19 C 1.52993 * 109.47200 * 60.25312 * 17 15 14 20 20 N 1.46499 * 109.46868 * 300.24816 * 17 15 14 21 21 C 1.36937 * 120.00221 * 204.99812 * 20 17 15 22 22 H 1.08001 * 119.99488 * 0.02562 * 21 20 17 23 23 C 1.38807 * 120.00245 * 180.02562 * 21 20 17 24 24 N 1.31620 * 120.00217 * 0.02562 * 23 21 20 25 25 Si 1.86806 * 120.00106 * 180.02562 * 23 21 20 26 26 H 1.48493 * 109.47089 * 59.99925 * 25 23 21 27 27 H 1.48494 * 109.47122 * 180.02562 * 25 23 21 28 28 H 1.48504 * 109.46870 * 300.00080 * 25 23 21 29 29 C 1.47161 * 120.98512 * 186.11595 * 11 9 8 30 30 H 1.09000 * 109.47231 * 60.00262 * 1 2 3 31 31 H 1.09001 * 109.47294 * 299.99770 * 1 2 3 32 32 H 1.09006 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.47579 * 120.00155 * 2 1 3 34 34 H 1.09002 * 109.47235 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.46890 * 299.99947 * 3 2 1 36 36 H 1.08994 * 109.47312 * 60.00493 * 3 2 1 37 37 H 1.08002 * 125.56604 * 359.97438 * 5 4 2 38 38 H 1.07992 * 126.07090 * 179.97438 * 6 5 4 39 39 H 1.07999 * 126.45765 * 180.02562 * 7 6 5 40 40 H 1.09003 * 109.68165 * 249.20251 * 12 11 9 41 41 H 1.08999 * 109.68257 * 9.76091 * 12 11 9 42 42 H 1.09000 * 109.65872 * 292.57077 * 13 12 11 43 43 H 1.09003 * 109.48521 * 172.40234 * 13 12 11 44 44 H 1.08998 * 109.47645 * 59.99890 * 19 17 15 45 45 H 1.09002 * 109.47023 * 179.97438 * 19 17 15 46 46 H 1.09003 * 109.47330 * 299.99804 * 19 17 15 47 47 H 0.97003 * 120.00020 * 25.01033 * 20 17 15 48 48 H 0.96999 * 120.00319 * 179.97438 * 24 23 21 49 49 H 1.08997 * 109.67824 * 350.23915 * 29 11 9 50 50 H 1.09000 * 109.68129 * 110.79350 * 29 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 1.8558 -0.2690 -2.4740 6 6 2.4401 -1.1624 -3.3078 7 6 2.9896 -2.1832 -2.5258 8 6 2.7238 -1.8725 -1.2091 9 6 3.1176 -2.6600 -0.0360 10 8 2.5433 -2.4999 1.0250 11 7 4.1151 -3.5609 -0.1331 12 6 4.9081 -3.6831 -1.3666 13 6 6.3966 -3.6346 -0.9860 14 8 6.6525 -4.6058 0.0314 15 6 5.9474 -4.3733 1.2531 16 1 6.1966 -3.3831 1.6345 17 6 6.3449 -5.4334 2.2822 18 1 5.8035 -5.2581 3.2119 19 6 7.8498 -5.3502 2.5449 20 7 6.0118 -6.7636 1.7666 21 6 5.7844 -7.7975 2.6352 22 1 5.8502 -7.6321 3.7005 23 6 5.4694 -9.0579 2.1467 24 7 5.3897 -9.2596 0.8485 25 14 5.1585 -10.4681 3.3317 26 1 4.0139 -10.1293 4.2149 27 1 4.8444 -11.6998 2.5639 28 1 6.3709 -10.6964 4.1583 29 6 4.4396 -4.4558 0.9892 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3634 0.5138 0.8900 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8934 -0.5138 0.8899 34 1 3.1300 1.4425 -0.0005 35 1 1.6766 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 1.3439 0.6321 -2.7779 38 1 2.4746 -1.0983 -4.3853 39 1 3.5258 -3.0491 -2.8853 40 1 4.6822 -4.6305 -1.8560 41 1 4.6726 -2.8572 -2.0378 42 1 6.6476 -2.6417 -0.6128 43 1 7.0037 -3.8578 -1.8634 44 1 8.0976 -4.3605 2.9285 45 1 8.1329 -6.1051 3.2784 46 1 8.3912 -5.5255 1.6152 47 1 5.9526 -6.9120 0.8098 48 1 5.1699 -10.1405 0.5070 49 1 3.8935 -4.1418 1.8787 50 1 4.1673 -5.4796 0.7329 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725320574.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:08 Heat of formation + Delta-G solvation = -17.368032 kcal Electronic energy + Delta-G solvation = -30390.711203 eV Core-core repulsion = 26419.337429 eV Total energy + Delta-G solvation = -3971.373774 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -42.64777 -41.03605 -39.36484 -37.21827 -36.53587 -35.62778 -34.18386 -32.02271 -30.83984 -30.53962 -29.99964 -28.63864 -28.26157 -25.93021 -25.03332 -24.52359 -23.34720 -22.21879 -21.52164 -21.18008 -19.70458 -19.31366 -18.30121 -17.69713 -17.31844 -16.96139 -16.65160 -16.35213 -16.08304 -15.91117 -15.62563 -15.47748 -15.14694 -15.06896 -14.84160 -14.64890 -14.28969 -14.00888 -13.68895 -13.60628 -13.59340 -13.41176 -13.12832 -13.07620 -13.03623 -12.73745 -12.56009 -12.50845 -12.40951 -12.29830 -12.22608 -12.10514 -11.79556 -11.68613 -11.43937 -11.10268 -10.94747 -10.90260 -9.70449 -9.66148 -9.13987 -8.94357 -7.89035 -5.16541 0.44182 1.47312 1.47757 1.50468 1.56064 1.81496 2.13239 2.22106 2.58215 2.79728 3.41601 3.44303 3.62776 3.68575 3.92196 3.92946 3.96881 4.00300 4.12987 4.15737 4.18299 4.26571 4.32700 4.39056 4.47910 4.50563 4.58970 4.61058 4.65247 4.73587 4.76041 4.80062 4.84300 4.90145 4.98446 5.01089 5.08285 5.15506 5.19385 5.20462 5.26381 5.31476 5.53813 5.60020 5.83622 6.01627 6.24181 6.26328 6.33254 6.37454 6.96592 7.39484 8.15185 8.41145 9.34000 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016240 B = 0.002909 C = 0.002826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1723.723085 B = 9622.429685 C = 9905.997825 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.103 3.897 3 C -0.151 4.151 4 N -0.406 5.406 5 C 0.028 3.972 6 C -0.213 4.213 7 C -0.152 4.152 8 C -0.083 4.083 9 C 0.580 3.420 10 O -0.590 6.590 11 N -0.598 5.598 12 C 0.044 3.956 13 C 0.044 3.956 14 O -0.382 6.382 15 C 0.095 3.905 16 H 0.074 0.926 17 C 0.174 3.826 18 H 0.058 0.942 19 C -0.148 4.148 20 N -0.726 5.726 21 C -0.237 4.237 22 H 0.075 0.925 23 C -0.074 4.074 24 N -0.967 5.967 25 Si 0.968 3.032 26 H -0.281 1.281 27 H -0.297 1.297 28 H -0.279 1.279 29 C 0.098 3.902 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.038 0.962 33 H 0.087 0.913 34 H 0.051 0.949 35 H 0.084 0.916 36 H 0.091 0.909 37 H 0.200 0.800 38 H 0.169 0.831 39 H 0.167 0.833 40 H 0.077 0.923 41 H 0.146 0.854 42 H 0.062 0.938 43 H 0.131 0.869 44 H 0.066 0.934 45 H 0.039 0.961 46 H 0.046 0.954 47 H 0.378 0.622 48 H 0.249 0.751 49 H 0.081 0.919 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.207 25.745 -9.395 27.896 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.002 3.998 3 C -0.209 4.209 4 N -0.079 5.079 5 C -0.108 4.108 6 C -0.236 4.236 7 C -0.179 4.179 8 C -0.196 4.196 9 C 0.372 3.628 10 O -0.473 6.473 11 N -0.330 5.330 12 C -0.077 4.077 13 C -0.033 4.033 14 O -0.301 6.301 15 C 0.035 3.965 16 H 0.091 0.909 17 C 0.065 3.935 18 H 0.076 0.924 19 C -0.208 4.208 20 N -0.367 5.367 21 C -0.369 4.369 22 H 0.093 0.907 23 C -0.266 4.266 24 N -0.617 5.617 25 Si 0.798 3.202 26 H -0.207 1.207 27 H -0.224 1.224 28 H -0.205 1.205 29 C -0.025 4.025 30 H 0.101 0.899 31 H 0.109 0.891 32 H 0.057 0.943 33 H 0.106 0.894 34 H 0.070 0.930 35 H 0.103 0.897 36 H 0.110 0.890 37 H 0.217 0.783 38 H 0.186 0.814 39 H 0.184 0.816 40 H 0.095 0.905 41 H 0.163 0.837 42 H 0.080 0.920 43 H 0.149 0.851 44 H 0.085 0.915 45 H 0.058 0.942 46 H 0.065 0.935 47 H 0.211 0.789 48 H 0.058 0.942 49 H 0.100 0.900 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -5.520 25.745 -8.346 27.621 hybrid contribution -0.384 -1.425 0.493 1.556 sum -5.904 24.320 -7.853 26.229 Atomic orbital electron populations 1.22083 0.92129 1.02065 1.04571 1.21895 0.96555 0.94898 0.86424 1.22118 1.01323 0.92547 1.04875 1.44381 1.39309 1.16556 1.07658 1.22555 1.04322 1.02387 0.81520 1.21206 1.05786 0.96059 1.00589 1.22020 1.03685 1.01863 0.90297 1.19849 1.11120 0.94248 0.94417 1.17520 0.79118 0.79289 0.86915 1.90713 1.56003 1.69195 1.31357 1.47863 1.33068 1.35671 1.16370 1.23637 0.91804 1.05500 0.86742 1.23300 0.94797 0.92626 0.92565 1.88055 1.67344 1.51570 1.23131 1.22594 0.89246 0.98584 0.86048 0.90856 1.20487 0.94993 0.84201 0.93846 0.92383 1.22167 0.97270 1.00527 1.00817 1.42481 1.83377 1.04924 1.05918 1.19586 1.37677 0.89437 0.90233 0.90740 1.25473 1.03850 1.00073 0.97232 1.69823 1.57266 1.22260 1.12398 0.85293 0.78057 0.78918 0.77980 1.20715 1.22371 1.20494 1.22092 0.97008 0.93305 0.90046 0.89929 0.89082 0.94322 0.89448 0.92952 0.89703 0.89047 0.78280 0.81382 0.81598 0.90498 0.83721 0.91953 0.85146 0.91478 0.94189 0.93520 0.78938 0.94244 0.90044 0.92020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.31 71.98 0.67 -1.71 16 2 C 0.10 2.01 3.40 44.99 0.15 2.16 16 3 C -0.15 -1.87 9.15 71.98 0.66 -1.22 16 4 N -0.41 -8.68 2.64 -488.66 -1.29 -9.97 16 5 C 0.03 0.43 10.34 83.48 0.86 1.29 16 6 C -0.21 -3.42 10.81 22.01 0.24 -3.19 16 7 C -0.15 -3.20 8.58 22.57 0.19 -3.01 16 8 C -0.08 -2.22 6.58 40.35 0.27 -1.95 16 9 C 0.58 19.42 7.58 86.45 0.66 20.08 16 10 O -0.59 -23.32 14.16 -4.34 -0.06 -23.38 16 11 N -0.60 -19.26 3.01 -821.22 -2.48 -21.74 16 12 C 0.04 1.10 5.29 86.50 0.46 1.56 16 13 C 0.04 1.07 7.00 72.22 0.51 1.58 16 14 O -0.38 -13.17 9.22 -148.98 -1.37 -14.54 16 15 C 0.09 3.34 2.53 30.69 0.08 3.41 16 16 H 0.07 2.31 8.14 -2.39 -0.02 2.29 16 17 C 0.17 7.10 2.73 44.99 0.12 7.22 16 18 H 0.06 2.37 8.08 -2.39 -0.02 2.35 16 19 C -0.15 -5.46 9.35 71.98 0.67 -4.79 16 20 N -0.73 -37.29 4.29 -322.95 -1.39 -38.67 16 21 C -0.24 -13.38 9.93 84.03 0.83 -12.55 16 22 H 0.07 4.03 7.83 -2.91 -0.02 4.00 16 23 C -0.07 -4.33 5.50 84.86 0.47 -3.86 16 24 N -0.97 -60.28 13.06 21.65 0.28 -60.00 16 25 Si 0.97 47.31 29.55 68.60 2.03 49.33 16 26 H -0.28 -13.31 7.11 99.48 0.71 -12.60 16 27 H -0.30 -14.67 7.11 99.48 0.71 -13.96 16 28 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 29 C 0.10 3.74 5.88 86.35 0.51 4.25 16 30 H 0.08 0.92 8.03 -2.39 -0.02 0.90 16 31 H 0.09 1.12 8.14 -2.39 -0.02 1.11 16 32 H 0.04 0.81 8.14 -2.38 -0.02 0.79 16 33 H 0.09 2.36 5.71 -2.39 -0.01 2.35 16 34 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 35 H 0.08 0.68 7.67 -2.39 -0.02 0.66 16 36 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 37 H 0.20 1.47 7.88 -2.91 -0.02 1.44 16 38 H 0.17 1.75 8.06 -2.91 -0.02 1.73 16 39 H 0.17 3.04 5.55 -2.91 -0.02 3.03 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.15 2.80 3.81 -2.39 -0.01 2.79 16 42 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 44 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 45 H 0.04 1.56 8.14 -2.39 -0.02 1.54 16 46 H 0.05 1.80 7.69 -2.39 -0.02 1.79 16 47 H 0.38 21.16 7.20 -92.71 -0.67 20.49 16 48 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 49 H 0.08 3.27 7.06 -2.39 -0.02 3.25 16 50 H 0.06 2.79 7.27 -2.39 -0.02 2.78 16 Total: -1.00 -75.02 392.78 3.34 -71.68 By element: Atomic # 1 Polarization: 37.75 SS G_CDS: 0.27 Total: 38.02 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: 7.34 Total: 9.27 kcal Atomic # 7 Polarization: -125.51 SS G_CDS: -4.87 Total: -130.38 kcal Atomic # 8 Polarization: -36.49 SS G_CDS: -1.43 Total: -37.92 kcal Atomic # 14 Polarization: 47.31 SS G_CDS: 2.03 Total: 49.33 kcal Total: -75.02 3.34 -71.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725320574.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.309 kcal (2) G-P(sol) polarization free energy of solvation -75.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.368 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds