Wall clock time and date at job start Tue Mar 31 2020 19:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46728 * 2 1 4 4 C 1.52998 * 109.47442 * 240.00102 * 2 1 3 5 5 C 1.50706 * 109.46976 * 64.99648 * 4 2 1 6 6 O 1.21279 * 120.00002 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99585 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00340 * 0.02562 * 7 5 4 9 9 C 1.46501 * 119.99700 * 180.02562 * 7 5 4 10 10 C 1.53002 * 109.47338 * 90.00245 * 9 7 5 11 11 H 1.08998 * 109.46835 * 59.99819 * 10 9 7 12 12 O 1.42900 * 109.46621 * 300.00231 * 10 9 7 13 13 C 1.53002 * 109.47121 * 180.02562 * 10 9 7 14 14 N 1.46502 * 109.46721 * 185.00036 * 13 10 9 15 15 C 1.46501 * 119.99937 * 269.99838 * 14 13 10 16 16 C 1.36936 * 119.99931 * 90.00072 * 14 13 10 17 17 H 1.07992 * 120.00503 * 20.35704 * 16 14 13 18 18 C 1.38814 * 119.99762 * 200.36263 * 16 14 13 19 19 N 1.31620 * 120.00073 * 14.99205 * 18 16 14 20 20 Si 1.86795 * 120.00110 * 194.99145 * 18 16 14 21 21 H 1.48494 * 109.47322 * 85.00057 * 20 18 16 22 22 H 1.48502 * 109.47282 * 205.00193 * 20 18 16 23 23 H 1.48508 * 109.47207 * 325.00219 * 20 18 16 24 24 C 1.50697 * 109.47166 * 120.00046 * 2 1 3 25 25 C 1.38653 * 120.78991 * 240.00332 * 24 2 1 26 26 C 1.38204 * 119.16533 * 179.97438 * 25 24 2 27 27 N 1.31870 * 120.76158 * 359.97438 * 26 25 24 28 28 C 1.31866 * 121.72705 * 0.02562 * 27 26 25 29 29 C 1.38207 * 120.76545 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.46887 * 60.00469 * 1 2 3 31 31 H 1.09003 * 109.46728 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47209 * 299.99454 * 1 2 3 33 33 H 1.08996 * 109.47443 * 184.99427 * 4 2 1 34 34 H 1.09002 * 109.46923 * 305.00193 * 4 2 1 35 35 H 1.09001 * 109.47394 * 89.99623 * 8 7 5 36 36 H 1.09001 * 109.46916 * 209.99565 * 8 7 5 37 37 H 1.09003 * 109.46977 * 329.99310 * 8 7 5 38 38 H 1.09007 * 109.47208 * 210.00216 * 9 7 5 39 39 H 1.08999 * 109.47109 * 329.99840 * 9 7 5 40 40 H 0.96701 * 113.99949 * 299.99070 * 12 10 9 41 41 H 1.09006 * 109.46776 * 304.99558 * 13 10 9 42 42 H 1.08997 * 109.47160 * 64.99592 * 13 10 9 43 43 H 1.08991 * 109.47154 * 95.10313 * 15 14 13 44 44 H 1.09000 * 109.46924 * 215.10754 * 15 14 13 45 45 H 1.09006 * 109.46720 * 335.10443 * 15 14 13 46 46 H 0.97000 * 120.00233 * 180.02562 * 19 18 16 47 47 H 1.08010 * 120.41810 * 359.95837 * 25 24 2 48 48 H 1.07996 * 119.61871 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.62029 * 179.97438 * 28 27 26 50 50 H 1.08004 * 120.42079 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0117 1.0874 -2.3632 7 7 1.9855 -0.3913 -3.7001 8 6 2.7466 -1.6356 -3.8369 9 6 1.5983 0.3656 -4.8932 10 6 2.6961 1.3749 -5.2354 11 1 3.6292 0.8455 -5.4278 12 8 2.8756 2.2733 -4.1387 13 6 2.2915 2.1658 -6.4811 14 7 3.3920 3.0473 -6.8785 15 6 3.4717 4.4077 -6.3406 16 6 4.3461 2.5998 -7.7529 17 1 4.1370 1.7578 -8.3960 18 6 5.5823 3.2284 -7.8125 19 7 5.9519 4.0463 -6.8498 20 14 6.7215 2.9134 -9.2590 21 1 6.3645 3.8227 -10.3774 22 1 8.1260 3.1637 -8.8467 23 1 6.5797 1.5034 -9.7030 24 6 2.0324 -0.7104 1.2304 25 6 2.8304 -0.0524 2.1538 26 6 3.2720 -0.7361 3.2707 27 7 2.9423 -1.9984 3.4629 28 6 2.1853 -2.6556 2.6062 29 6 1.7075 -2.0375 1.4661 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.1264 -0.7993 -1.2056 34 1 1.6055 -1.7198 -1.2951 35 1 2.0573 -2.4756 -3.9230 36 1 3.3697 -1.5840 -4.7298 37 1 3.3791 -1.7729 -2.9599 38 1 1.4614 -0.3198 -5.7297 39 1 0.6652 0.8949 -4.7007 40 1 2.0836 2.7794 -3.9112 41 1 2.0681 1.4744 -7.2937 42 1 1.4078 2.7645 -6.2602 43 1 4.1267 4.4161 -5.4696 44 1 3.8715 5.0768 -7.1025 45 1 2.4758 4.7422 -6.0497 46 1 6.8156 4.4859 -6.8917 47 1 3.1037 0.9815 2.0020 48 1 3.8943 -0.2308 3.9945 49 1 1.9364 -3.6890 2.7972 50 1 1.0876 -2.5810 0.7683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725716280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:55 Heat of formation + Delta-G solvation = -28.267346 kcal Electronic energy + Delta-G solvation = -29395.660681 eV Core-core repulsion = 25423.814278 eV Total energy + Delta-G solvation = -3971.846404 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.41 seconds Orbital eigenvalues (eV) -40.68614 -39.84596 -37.37252 -35.89375 -35.21115 -34.47560 -31.56969 -31.37688 -31.16638 -29.83544 -28.00973 -26.95717 -25.78715 -25.24667 -24.32625 -23.64331 -22.02878 -20.77957 -20.48218 -18.99869 -17.57837 -16.86686 -16.61556 -16.41361 -16.05908 -15.90849 -15.77256 -15.12081 -14.74279 -14.52586 -14.33944 -14.10468 -13.96372 -13.74733 -13.50780 -13.38143 -13.09142 -13.01762 -12.78090 -12.58605 -12.33690 -12.08622 -11.76024 -11.62621 -11.52341 -11.37699 -11.07425 -11.00006 -10.84985 -10.67591 -10.36946 -10.26414 -9.95752 -9.92198 -9.83697 -9.72007 -9.68071 -9.46536 -9.41020 -8.55206 -8.32812 -6.68147 -5.67604 -3.11626 0.87676 0.99036 2.73556 3.06317 3.38728 3.44561 3.46163 3.56294 4.18879 4.23140 4.39620 4.51630 4.68240 4.76781 4.84276 4.85030 4.90492 5.03928 5.11261 5.16219 5.22383 5.32914 5.37325 5.42308 5.47377 5.50099 5.54141 5.55899 5.62313 5.70496 5.79820 5.80455 5.89199 5.90114 6.07122 6.13124 6.16531 6.24022 6.44772 6.53948 6.61714 6.83880 6.86950 7.45933 7.46414 7.71561 7.79476 7.92710 8.29152 8.41956 8.49936 9.26977 9.91509 10.40428 11.36448 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.002337 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.683168 B =11977.427495 C =12345.666931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.038 4.038 3 H 0.093 0.907 4 C -0.131 4.131 5 C 0.521 3.479 6 O -0.535 6.535 7 N -0.608 5.608 8 C 0.077 3.923 9 C 0.080 3.920 10 C 0.072 3.928 11 H 0.093 0.907 12 O -0.542 6.542 13 C 0.125 3.875 14 N -0.593 5.593 15 C 0.169 3.831 16 C -0.258 4.258 17 H 0.068 0.932 18 C 0.002 3.998 19 N -0.900 5.900 20 Si 0.903 3.097 21 H -0.288 1.288 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.029 4.029 25 C -0.168 4.168 26 C 0.099 3.901 27 N -0.492 5.492 28 C 0.097 3.903 29 C -0.170 4.170 30 H 0.084 0.916 31 H 0.049 0.951 32 H 0.053 0.947 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.053 0.947 36 H 0.075 0.925 37 H 0.069 0.931 38 H 0.078 0.922 39 H 0.081 0.919 40 H 0.362 0.638 41 H 0.049 0.951 42 H 0.040 0.960 43 H 0.035 0.965 44 H 0.038 0.962 45 H -0.006 1.006 46 H 0.252 0.748 47 H 0.136 0.864 48 H 0.155 0.845 49 H 0.153 0.847 50 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.881 -13.823 15.167 23.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.057 4.057 3 H 0.112 0.888 4 C -0.171 4.171 5 C 0.310 3.690 6 O -0.412 6.412 7 N -0.341 5.341 8 C -0.066 4.066 9 C -0.043 4.043 10 C 0.008 3.992 11 H 0.111 0.889 12 O -0.345 6.345 13 C -0.004 4.004 14 N -0.314 5.314 15 C 0.024 3.976 16 C -0.388 4.388 17 H 0.085 0.915 18 C -0.197 4.197 19 N -0.545 5.545 20 Si 0.733 3.267 21 H -0.215 1.215 22 H -0.218 1.218 23 H -0.207 1.207 24 C -0.037 4.037 25 C -0.188 4.188 26 C -0.058 4.058 27 N -0.202 5.202 28 C -0.060 4.060 29 C -0.189 4.189 30 H 0.103 0.897 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.072 0.928 36 H 0.094 0.906 37 H 0.088 0.912 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.207 0.793 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.054 0.946 44 H 0.057 0.943 45 H 0.012 0.988 46 H 0.062 0.938 47 H 0.154 0.846 48 H 0.172 0.828 49 H 0.171 0.829 50 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -10.134 -13.834 15.946 23.417 hybrid contribution 0.107 0.262 -1.573 1.598 sum -10.027 -13.572 14.373 22.166 Atomic orbital electron populations 1.21947 0.93228 1.01658 1.03586 1.19947 0.97000 0.99604 0.89165 0.88825 1.21731 1.02971 0.99889 0.92466 1.20330 0.79122 0.85434 0.84148 1.90613 1.40425 1.24170 1.86013 1.47746 1.55422 1.24546 1.06344 1.21799 0.95840 0.85526 1.03482 1.22444 0.99964 0.95527 0.86394 1.23223 0.97949 0.89458 0.88567 0.88878 1.86618 1.39393 1.57250 1.51262 1.21443 0.91427 0.93358 0.94131 1.43867 1.26644 1.09551 1.51362 1.20760 0.94002 0.84442 0.98355 1.19172 0.92443 1.15229 1.11932 0.91470 1.24994 0.96659 1.00319 0.97753 1.70119 1.20696 1.32934 1.30723 0.86309 0.80126 0.77826 0.82444 1.21500 1.21801 1.20671 1.20389 0.93942 0.93853 0.95510 1.22167 0.99198 1.01823 0.95593 1.22772 0.96783 0.90350 0.95849 1.67671 1.12527 1.09282 1.30671 1.22740 0.93198 0.99886 0.90160 1.22010 1.02147 0.95334 0.99441 0.89732 0.93204 0.92783 0.88848 0.89151 0.92805 0.90622 0.91238 0.90314 0.90084 0.79267 0.93300 0.94163 0.94636 0.94346 0.98791 0.93821 0.84589 0.82778 0.82924 0.84939 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.41 8.76 37.16 0.33 -1.08 16 2 C -0.04 -0.37 2.24 -91.77 -0.21 -0.58 16 3 H 0.09 1.07 7.76 -51.93 -0.40 0.67 16 4 C -0.13 -1.26 3.48 -27.88 -0.10 -1.36 16 5 C 0.52 6.81 6.90 -10.98 -0.08 6.74 16 6 O -0.53 -8.41 12.33 -3.21 -0.04 -8.45 16 7 N -0.61 -7.66 2.83 -181.56 -0.51 -8.17 16 8 C 0.08 0.72 10.24 59.85 0.61 1.34 16 9 C 0.08 1.11 5.15 -4.04 -0.02 1.09 16 10 C 0.07 1.31 3.48 -26.73 -0.09 1.22 16 11 H 0.09 1.98 8.14 -51.93 -0.42 1.55 16 12 O -0.54 -11.08 11.70 -44.00 -0.51 -11.59 16 13 C 0.13 2.49 5.37 -4.04 -0.02 2.47 16 14 N -0.59 -15.02 2.89 -181.12 -0.52 -15.54 16 15 C 0.17 4.33 8.62 59.85 0.52 4.84 16 16 C -0.26 -7.10 9.68 -15.06 -0.15 -7.25 16 17 H 0.07 1.78 7.86 -52.49 -0.41 1.37 16 18 C 0.00 0.04 5.06 -17.43 -0.09 -0.05 16 19 N -0.90 -26.86 10.67 55.49 0.59 -26.27 16 20 Si 0.90 21.96 29.58 -169.99 -5.03 16.93 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 23 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 24 C -0.03 -0.26 4.79 -104.32 -0.50 -0.76 16 25 C -0.17 -1.52 9.76 -39.44 -0.39 -1.91 16 26 C 0.10 0.91 11.18 -17.55 -0.20 0.71 16 27 N -0.49 -5.13 10.36 -13.25 -0.14 -5.27 16 28 C 0.10 0.83 11.18 -17.55 -0.20 0.63 16 29 C -0.17 -1.36 8.89 -39.44 -0.35 -1.71 16 30 H 0.08 0.99 5.95 -51.93 -0.31 0.68 16 31 H 0.05 0.40 7.48 -51.93 -0.39 0.02 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.09 0.90 7.40 -51.93 -0.38 0.51 16 34 H 0.09 0.67 7.63 -51.93 -0.40 0.28 16 35 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 36 H 0.07 0.75 8.07 -51.93 -0.42 0.33 16 37 H 0.07 0.57 6.44 -51.93 -0.33 0.24 16 38 H 0.08 0.94 8.07 -51.93 -0.42 0.52 16 39 H 0.08 1.15 7.42 -51.93 -0.39 0.76 16 40 H 0.36 6.76 8.45 45.56 0.38 7.14 16 41 H 0.05 0.91 8.03 -51.93 -0.42 0.50 16 42 H 0.04 0.74 7.86 -51.93 -0.41 0.33 16 43 H 0.04 1.00 7.40 -51.93 -0.38 0.62 16 44 H 0.04 1.05 7.21 -51.93 -0.37 0.67 16 45 H -0.01 -0.15 7.84 -51.93 -0.41 -0.55 16 46 H 0.25 7.29 8.31 -40.82 -0.34 6.95 16 47 H 0.14 1.07 8.01 -52.48 -0.42 0.65 16 48 H 0.15 1.05 8.06 -52.49 -0.42 0.63 16 49 H 0.15 0.91 8.06 -52.49 -0.42 0.49 16 50 H 0.13 0.80 7.35 -52.48 -0.39 0.42 16 LS Contribution 401.55 15.07 6.05 6.05 Total: -1.00 -34.21 401.55 -8.55 -42.76 By element: Atomic # 1 Polarization: 12.72 SS G_CDS: -7.51 Total: 5.21 kcal Atomic # 6 Polarization: 5.27 SS G_CDS: -0.92 Total: 4.35 kcal Atomic # 7 Polarization: -54.66 SS G_CDS: -0.58 Total: -55.24 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -0.55 Total: -20.05 kcal Atomic # 14 Polarization: 21.96 SS G_CDS: -5.03 Total: 16.93 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -34.21 -8.55 -42.76 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725716280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.493 kcal (2) G-P(sol) polarization free energy of solvation -34.213 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.267 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.41 seconds