Wall clock time and date at job start Tue Mar 31 2020 19:26:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09003 * 109.46728 * 2 1 4 4 C 1.52998 * 109.47442 * 240.00102 * 2 1 3 5 5 C 1.50706 * 109.46976 * 64.99648 * 4 2 1 6 6 O 1.21279 * 120.00002 * 0.02562 * 5 4 2 7 7 N 1.34775 * 119.99585 * 179.97438 * 5 4 2 8 8 C 1.46498 * 120.00340 * 0.02562 * 7 5 4 9 9 C 1.46501 * 119.99700 * 180.02562 * 7 5 4 10 10 C 1.53002 * 109.47338 * 90.00245 * 9 7 5 11 11 H 1.08998 * 109.46835 * 59.99819 * 10 9 7 12 12 O 1.42900 * 109.46621 * 300.00231 * 10 9 7 13 13 C 1.53002 * 109.47121 * 180.02562 * 10 9 7 14 14 N 1.46502 * 109.46721 * 185.00036 * 13 10 9 15 15 C 1.46501 * 119.99937 * 269.99838 * 14 13 10 16 16 C 1.36936 * 119.99931 * 90.00072 * 14 13 10 17 17 H 1.07992 * 120.00503 * 20.35704 * 16 14 13 18 18 C 1.38814 * 119.99762 * 200.36263 * 16 14 13 19 19 N 1.31620 * 120.00073 * 14.99205 * 18 16 14 20 20 Si 1.86795 * 120.00110 * 194.99145 * 18 16 14 21 21 H 1.48494 * 109.47322 * 85.00057 * 20 18 16 22 22 H 1.48502 * 109.47282 * 205.00193 * 20 18 16 23 23 H 1.48508 * 109.47207 * 325.00219 * 20 18 16 24 24 C 1.50697 * 109.47166 * 120.00046 * 2 1 3 25 25 C 1.38653 * 120.78991 * 240.00332 * 24 2 1 26 26 C 1.38204 * 119.16533 * 179.97438 * 25 24 2 27 27 N 1.31870 * 120.76158 * 359.97438 * 26 25 24 28 28 C 1.31866 * 121.72705 * 0.02562 * 27 26 25 29 29 C 1.38207 * 120.76545 * 0.02562 * 28 27 26 30 30 H 1.08999 * 109.46887 * 60.00469 * 1 2 3 31 31 H 1.09003 * 109.46728 * 180.02562 * 1 2 3 32 32 H 1.08993 * 109.47209 * 299.99454 * 1 2 3 33 33 H 1.08996 * 109.47443 * 184.99427 * 4 2 1 34 34 H 1.09002 * 109.46923 * 305.00193 * 4 2 1 35 35 H 1.09001 * 109.47394 * 89.99623 * 8 7 5 36 36 H 1.09001 * 109.46916 * 209.99565 * 8 7 5 37 37 H 1.09003 * 109.46977 * 329.99310 * 8 7 5 38 38 H 1.09007 * 109.47208 * 210.00216 * 9 7 5 39 39 H 1.08999 * 109.47109 * 329.99840 * 9 7 5 40 40 H 0.96701 * 113.99949 * 299.99070 * 12 10 9 41 41 H 1.09006 * 109.46776 * 304.99558 * 13 10 9 42 42 H 1.08997 * 109.47160 * 64.99592 * 13 10 9 43 43 H 1.08991 * 109.47154 * 95.10313 * 15 14 13 44 44 H 1.09000 * 109.46924 * 215.10754 * 15 14 13 45 45 H 1.09006 * 109.46720 * 335.10443 * 15 14 13 46 46 H 0.97000 * 120.00233 * 180.02562 * 19 18 16 47 47 H 1.08010 * 120.41810 * 359.95837 * 25 24 2 48 48 H 1.07996 * 119.61871 * 179.97438 * 26 25 24 49 49 H 1.07997 * 119.62029 * 179.97438 * 28 27 26 50 50 H 1.08004 * 120.42079 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 1.6414 0.0571 -2.4766 6 8 1.0117 1.0874 -2.3632 7 7 1.9855 -0.3913 -3.7001 8 6 2.7466 -1.6356 -3.8369 9 6 1.5983 0.3656 -4.8932 10 6 2.6961 1.3749 -5.2354 11 1 3.6292 0.8455 -5.4278 12 8 2.8756 2.2733 -4.1387 13 6 2.2915 2.1658 -6.4811 14 7 3.3920 3.0473 -6.8785 15 6 3.4717 4.4077 -6.3406 16 6 4.3461 2.5998 -7.7529 17 1 4.1370 1.7578 -8.3960 18 6 5.5823 3.2284 -7.8125 19 7 5.9519 4.0463 -6.8498 20 14 6.7215 2.9134 -9.2590 21 1 6.3645 3.8227 -10.3774 22 1 8.1260 3.1637 -8.8467 23 1 6.5797 1.5034 -9.7030 24 6 2.0324 -0.7104 1.2304 25 6 2.8304 -0.0524 2.1538 26 6 3.2720 -0.7361 3.2707 27 7 2.9423 -1.9984 3.4629 28 6 2.1853 -2.6556 2.6062 29 6 1.7075 -2.0375 1.4661 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5137 0.8900 33 1 3.1264 -0.7993 -1.2056 34 1 1.6055 -1.7198 -1.2951 35 1 2.0573 -2.4756 -3.9230 36 1 3.3697 -1.5840 -4.7298 37 1 3.3791 -1.7729 -2.9599 38 1 1.4614 -0.3198 -5.7297 39 1 0.6652 0.8949 -4.7007 40 1 2.0836 2.7794 -3.9112 41 1 2.0681 1.4744 -7.2937 42 1 1.4078 2.7645 -6.2602 43 1 4.1267 4.4161 -5.4696 44 1 3.8715 5.0768 -7.1025 45 1 2.4758 4.7422 -6.0497 46 1 6.8156 4.4859 -6.8917 47 1 3.1037 0.9815 2.0020 48 1 3.8943 -0.2308 3.9945 49 1 1.9364 -3.6890 2.7972 50 1 1.0876 -2.5810 0.7683 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725716280.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:54 Heat of formation + Delta-G solvation = -50.704959 kcal Electronic energy + Delta-G solvation = -29396.633649 eV Core-core repulsion = 25423.814278 eV Total energy + Delta-G solvation = -3972.819372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -41.45288 -40.76287 -38.83104 -37.00002 -36.40639 -36.00063 -33.28296 -32.25645 -31.97820 -31.17349 -29.02247 -28.05911 -27.77486 -26.47995 -25.17037 -24.32071 -23.58268 -22.22316 -21.58798 -19.95449 -18.78523 -18.42352 -17.70783 -17.25621 -17.14530 -16.93993 -16.56141 -16.40747 -16.29789 -16.03414 -15.54567 -15.22169 -14.96294 -14.88683 -14.67439 -14.40766 -14.29615 -14.05506 -13.83403 -13.63712 -13.39325 -13.20379 -13.10512 -12.79620 -12.73206 -12.62660 -12.50017 -12.41108 -12.17196 -12.14750 -12.00849 -11.95164 -11.77006 -11.74147 -11.20210 -10.70268 -10.56378 -10.45140 -10.36355 -10.04400 -9.50697 -8.70383 -7.80173 -5.26261 0.24380 0.31169 1.45386 1.47826 1.55594 1.75271 2.13576 2.51790 2.90259 3.31222 3.42475 3.62282 3.64725 3.69465 3.76519 3.91814 4.04632 4.14775 4.18565 4.24160 4.26821 4.28848 4.30465 4.44721 4.54443 4.60605 4.64678 4.67355 4.73262 4.78745 4.83567 4.85362 4.91431 4.93554 4.98755 5.00160 5.10307 5.16627 5.30296 5.32941 5.39297 5.51549 5.58604 5.64518 5.78256 5.82335 6.32480 6.51019 6.99644 7.06833 7.15356 7.31785 7.89231 8.33583 9.23134 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017620 B = 0.002337 C = 0.002267 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1588.683168 B =11977.427495 C =12345.666931 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.032 4.032 3 H 0.068 0.932 4 C -0.122 4.122 5 C 0.512 3.488 6 O -0.568 6.568 7 N -0.613 5.613 8 C 0.071 3.929 9 C 0.094 3.906 10 C 0.082 3.918 11 H 0.062 0.938 12 O -0.564 6.564 13 C 0.121 3.879 14 N -0.611 5.611 15 C 0.187 3.813 16 C -0.261 4.261 17 H 0.077 0.923 18 C -0.060 4.060 19 N -0.938 5.938 20 Si 0.969 3.031 21 H -0.286 1.286 22 H -0.299 1.299 23 H -0.265 1.265 24 C -0.036 4.036 25 C -0.180 4.180 26 C 0.089 3.911 27 N -0.518 5.518 28 C 0.090 3.910 29 C -0.164 4.164 30 H 0.062 0.938 31 H 0.069 0.931 32 H 0.051 0.949 33 H 0.096 0.904 34 H 0.122 0.878 35 H 0.084 0.916 36 H 0.067 0.933 37 H 0.081 0.919 38 H 0.105 0.895 39 H 0.081 0.919 40 H 0.368 0.632 41 H 0.067 0.933 42 H 0.058 0.942 43 H 0.000 1.000 44 H 0.010 0.990 45 H 0.024 0.976 46 H 0.245 0.755 47 H 0.139 0.861 48 H 0.170 0.830 49 H 0.178 0.822 50 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.148 -16.699 14.878 25.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.051 4.051 3 H 0.086 0.914 4 C -0.162 4.162 5 C 0.302 3.698 6 O -0.447 6.447 7 N -0.345 5.345 8 C -0.071 4.071 9 C -0.030 4.030 10 C 0.019 3.981 11 H 0.080 0.920 12 O -0.369 6.369 13 C -0.006 4.006 14 N -0.333 5.333 15 C 0.042 3.958 16 C -0.391 4.391 17 H 0.095 0.905 18 C -0.255 4.255 19 N -0.585 5.585 20 Si 0.797 3.203 21 H -0.213 1.213 22 H -0.226 1.226 23 H -0.189 1.189 24 C -0.044 4.044 25 C -0.200 4.200 26 C -0.067 4.067 27 N -0.228 5.228 28 C -0.067 4.067 29 C -0.183 4.183 30 H 0.081 0.919 31 H 0.088 0.912 32 H 0.070 0.930 33 H 0.114 0.886 34 H 0.140 0.860 35 H 0.103 0.897 36 H 0.086 0.914 37 H 0.099 0.901 38 H 0.124 0.876 39 H 0.099 0.901 40 H 0.214 0.786 41 H 0.085 0.915 42 H 0.077 0.923 43 H 0.019 0.981 44 H 0.029 0.971 45 H 0.043 0.957 46 H 0.054 0.946 47 H 0.157 0.843 48 H 0.187 0.813 49 H 0.195 0.805 50 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -11.431 -16.766 15.654 25.628 hybrid contribution 0.421 1.134 -1.449 1.887 sum -11.010 -15.632 14.205 23.820 Atomic orbital electron populations 1.21868 0.92995 1.02572 1.02376 1.19808 0.97091 0.98434 0.89764 0.91357 1.21727 1.03174 1.00746 0.90519 1.20954 0.78527 0.85255 0.85082 1.90602 1.41919 1.25668 1.86547 1.47862 1.55526 1.25311 1.05766 1.22033 0.96415 0.84920 1.03761 1.22140 0.97682 0.95161 0.88055 1.22944 0.97982 0.89792 0.87338 0.92030 1.86587 1.40310 1.58052 1.51966 1.21660 0.90172 0.93426 0.95350 1.44101 1.27324 1.10271 1.51620 1.20419 0.94613 0.84814 0.95982 1.19584 0.92690 1.14763 1.12048 0.90483 1.25814 0.98534 1.00813 1.00291 1.70313 1.20849 1.34616 1.32746 0.85253 0.77476 0.78385 0.79154 1.21315 1.22639 1.18912 1.20383 0.94322 0.94529 0.95180 1.22305 0.99559 1.02207 0.95882 1.23047 0.97063 0.90338 0.96266 1.67696 1.13530 1.09836 1.31730 1.23211 0.92548 1.00959 0.89946 1.22233 1.01769 0.94717 0.99612 0.91908 0.91158 0.92971 0.88625 0.86021 0.89734 0.91369 0.90057 0.87648 0.90103 0.78578 0.91526 0.92342 0.98121 0.97087 0.95743 0.94629 0.84282 0.81296 0.80475 0.82409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 8.76 71.98 0.63 -1.89 16 2 C -0.03 -0.59 2.24 -11.54 -0.03 -0.62 16 3 H 0.07 1.60 7.76 -2.39 -0.02 1.59 16 4 C -0.12 -2.10 3.48 29.85 0.10 -2.00 16 5 C 0.51 12.68 6.90 87.66 0.60 13.28 16 6 O -0.57 -17.71 12.33 5.36 0.07 -17.65 16 7 N -0.61 -14.18 2.83 -846.73 -2.39 -16.57 16 8 C 0.07 1.12 10.24 127.77 1.31 2.43 16 9 C 0.09 2.42 5.15 86.38 0.44 2.86 16 10 C 0.08 2.96 3.48 30.60 0.11 3.07 16 11 H 0.06 2.62 8.14 -2.39 -0.02 2.60 16 12 O -0.56 -23.34 11.70 -140.59 -1.65 -24.98 16 13 C 0.12 4.66 5.37 86.38 0.46 5.12 16 14 N -0.61 -30.94 2.89 -726.93 -2.10 -33.05 16 15 C 0.19 9.76 8.62 127.77 1.10 10.86 16 16 C -0.26 -14.30 9.68 84.03 0.81 -13.49 16 17 H 0.08 3.99 7.86 -2.91 -0.02 3.97 16 18 C -0.06 -3.41 5.06 84.86 0.43 -2.98 16 19 N -0.94 -57.72 10.67 21.65 0.23 -57.49 16 20 Si 0.97 45.51 29.58 68.60 2.03 47.54 16 21 H -0.29 -13.25 7.11 99.48 0.71 -12.54 16 22 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.87 16 24 C -0.04 -0.60 4.79 -19.67 -0.09 -0.70 16 25 C -0.18 -3.18 9.76 22.36 0.22 -2.96 16 26 C 0.09 1.58 11.18 84.68 0.95 2.52 16 27 N -0.52 -10.14 10.36 -195.85 -2.03 -12.17 16 28 C 0.09 1.33 11.18 84.68 0.95 2.28 16 29 C -0.16 -2.19 8.89 22.36 0.20 -1.99 16 30 H 0.06 1.43 5.95 -2.39 -0.01 1.42 16 31 H 0.07 0.94 7.48 -2.39 -0.02 0.93 16 32 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.10 1.65 7.40 -2.39 -0.02 1.63 16 34 H 0.12 1.33 7.63 -2.39 -0.02 1.31 16 35 H 0.08 0.86 8.14 -2.39 -0.02 0.84 16 36 H 0.07 1.20 8.07 -2.39 -0.02 1.18 16 37 H 0.08 1.10 6.44 -2.39 -0.02 1.08 16 38 H 0.11 2.17 8.07 -2.38 -0.02 2.15 16 39 H 0.08 2.13 7.42 -2.39 -0.02 2.12 16 40 H 0.37 13.90 8.45 -74.06 -0.63 13.28 16 41 H 0.07 2.33 8.03 -2.38 -0.02 2.31 16 42 H 0.06 2.04 7.86 -2.39 -0.02 2.02 16 43 H 0.00 0.03 7.40 -2.39 -0.02 0.01 16 44 H 0.01 0.59 7.21 -2.39 -0.02 0.58 16 45 H 0.02 1.09 7.84 -2.38 -0.02 1.07 16 46 H 0.24 14.69 8.31 -92.71 -0.77 13.92 16 47 H 0.14 2.24 8.01 -2.91 -0.02 2.22 16 48 H 0.17 2.23 8.06 -2.91 -0.02 2.21 16 49 H 0.18 1.59 8.06 -2.91 -0.02 1.56 16 50 H 0.16 1.23 7.35 -2.91 -0.02 1.21 16 Total: -1.00 -76.14 401.55 2.66 -73.48 By element: Atomic # 1 Polarization: 24.76 SS G_CDS: 0.30 Total: 25.07 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 8.20 Total: 15.81 kcal Atomic # 7 Polarization: -112.98 SS G_CDS: -6.29 Total: -119.27 kcal Atomic # 8 Polarization: -41.05 SS G_CDS: -1.58 Total: -42.63 kcal Atomic # 14 Polarization: 45.51 SS G_CDS: 2.03 Total: 47.54 kcal Total: -76.14 2.66 -73.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725716280.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.779 kcal (2) G-P(sol) polarization free energy of solvation -76.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.656 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.484 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds