Wall clock time and date at job start Tue Mar 31 2020 19:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47450 * 2 1 4 4 C 1.52999 * 109.47292 * 120.00045 * 2 1 3 5 5 C 1.50704 * 109.46990 * 295.00123 * 4 2 1 6 6 O 1.21283 * 119.99839 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99612 * 180.27321 * 5 4 2 8 8 C 1.46499 * 120.00254 * 359.72570 * 7 5 4 9 9 C 1.46498 * 119.99805 * 179.71985 * 7 5 4 10 10 C 1.53007 * 109.46913 * 90.00215 * 9 7 5 11 11 H 1.09001 * 109.46992 * 305.00197 * 10 9 7 12 12 O 1.42898 * 109.46862 * 64.99998 * 10 9 7 13 13 C 1.53004 * 109.47146 * 184.99958 * 10 9 7 14 14 N 1.46500 * 109.46971 * 179.97438 * 13 10 9 15 15 C 1.46494 * 119.99797 * 90.00144 * 14 13 10 16 16 C 1.36937 * 119.99868 * 270.00010 * 14 13 10 17 17 H 1.08000 * 120.00184 * 23.19132 * 16 14 13 18 18 C 1.38814 * 120.00173 * 203.19061 * 16 14 13 19 19 N 1.31624 * 119.99374 * 13.71687 * 18 16 14 20 20 Si 1.86791 * 120.00253 * 193.71829 * 18 16 14 21 21 H 1.48498 * 109.47382 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47211 * 119.99806 * 20 18 16 23 23 H 1.48505 * 109.46977 * 239.99690 * 20 18 16 24 24 C 1.50707 * 109.47153 * 240.00101 * 2 1 3 25 25 C 1.38643 * 120.78508 * 299.72260 * 24 2 1 26 26 C 1.38213 * 119.15871 * 179.75386 * 25 24 2 27 27 N 1.31864 * 120.76154 * 0.53466 * 26 25 24 28 28 C 1.31868 * 121.72924 * 359.73040 * 27 26 25 29 29 C 1.38203 * 120.76350 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46821 * 59.99535 * 1 2 3 31 31 H 1.08990 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46659 * 300.00239 * 1 2 3 33 33 H 1.08995 * 109.47519 * 174.99547 * 4 2 1 34 34 H 1.09001 * 109.47103 * 54.99795 * 4 2 1 35 35 H 1.08994 * 109.47310 * 90.00128 * 8 7 5 36 36 H 1.09001 * 109.47129 * 209.99882 * 8 7 5 37 37 H 1.08999 * 109.46904 * 329.99738 * 8 7 5 38 38 H 1.09002 * 109.47369 * 210.00186 * 9 7 5 39 39 H 1.09002 * 109.47362 * 330.00365 * 9 7 5 40 40 H 0.96695 * 114.00055 * 60.00743 * 12 10 9 41 41 H 1.08995 * 109.47025 * 300.00255 * 13 10 9 42 42 H 1.09005 * 109.46753 * 59.99740 * 13 10 9 43 43 H 1.09005 * 109.47118 * 95.15927 * 15 14 13 44 44 H 1.08998 * 109.46951 * 215.15291 * 15 14 13 45 45 H 1.08993 * 109.47373 * 335.15441 * 15 14 13 46 46 H 0.97004 * 119.99210 * 180.02562 * 19 18 16 47 47 H 1.08004 * 120.42410 * 359.97438 * 25 24 2 48 48 H 1.08002 * 119.61791 * 180.24523 * 26 25 24 49 49 H 1.08002 * 119.62022 * 180.02562 * 28 27 26 50 50 H 1.07999 * 120.42225 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9897 -0.3888 3.6998 8 6 2.7507 -1.6331 3.8366 9 6 1.6074 0.3710 4.8926 10 6 0.2417 -0.1096 5.3874 11 1 -0.4836 -0.0399 4.5766 12 8 0.3429 -1.4676 5.8204 13 6 -0.2143 0.7659 6.5564 14 7 -1.5223 0.3061 7.0297 15 6 -1.6047 -0.7122 8.0796 16 6 -2.6677 0.8281 6.4906 17 1 -2.6481 1.2704 5.5055 18 6 -3.8541 0.7889 7.2103 19 7 -3.8350 0.5051 8.4954 20 14 -5.4774 1.1388 6.3550 21 1 -5.2284 1.4292 4.9201 22 1 -6.3650 -0.0458 6.4739 23 1 -6.1293 2.3117 6.9911 24 6 2.0324 -0.7104 -1.2305 25 6 1.7122 -2.0391 -1.4632 26 6 2.1868 -2.6562 -2.6053 27 7 2.9438 -1.9990 -3.4619 28 6 3.2727 -0.7365 -3.2703 29 6 2.8301 -0.0523 -2.1540 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7996 1.2056 34 1 1.6054 -1.7198 1.2951 35 1 3.8176 -1.4109 3.8140 36 1 2.4991 -2.1106 4.7836 37 1 2.5017 -2.3036 3.0142 38 1 2.3514 0.2184 5.6745 39 1 1.5520 1.4312 4.6458 40 1 0.9720 -1.6045 6.5419 41 1 0.5110 0.6961 7.3670 42 1 -0.2914 1.8018 6.2260 43 1 -1.7179 -0.2263 9.0489 44 1 -2.4638 -1.3568 7.8939 45 1 -0.6940 -1.3109 8.0775 46 1 -4.6641 0.4773 8.9982 47 1 1.0967 -2.5841 -0.7628 48 1 1.9386 -3.6899 -2.7959 49 1 3.8945 -0.2310 -3.9944 50 1 3.1032 0.9815 -2.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001725716282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:27:00 Heat of formation + Delta-G solvation = -29.472158 kcal Electronic energy + Delta-G solvation = -29277.797225 eV Core-core repulsion = 25305.898577 eV Total energy + Delta-G solvation = -3971.898648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.74122 -39.93041 -37.62859 -35.96376 -35.27493 -34.51070 -31.65221 -31.46060 -31.18388 -29.95559 -28.07538 -26.91271 -25.79503 -25.28436 -24.36322 -23.68195 -22.16418 -20.81925 -20.59704 -19.07819 -17.64742 -16.84782 -16.63173 -16.45361 -16.16316 -16.05729 -15.78375 -15.11788 -14.87020 -14.72858 -14.46721 -14.28276 -13.93391 -13.76289 -13.53462 -13.26865 -13.17857 -12.97496 -12.86635 -12.68486 -12.41836 -12.12209 -11.87220 -11.63577 -11.57432 -11.39366 -11.11688 -11.01419 -10.84787 -10.67779 -10.52318 -10.34823 -10.04758 -9.87558 -9.84559 -9.80079 -9.74351 -9.59601 -9.45337 -8.63221 -8.35830 -6.64197 -5.67279 -3.13650 0.83397 0.94611 2.61923 2.96628 3.41316 3.48499 3.51732 3.51958 4.14094 4.18412 4.36270 4.53495 4.61582 4.71454 4.77906 4.82730 4.85159 4.87117 5.00037 5.11604 5.17272 5.31021 5.32824 5.33804 5.41112 5.46136 5.47944 5.50320 5.61938 5.66365 5.78689 5.82259 5.88872 5.92683 5.95191 6.02949 6.15199 6.30285 6.40643 6.50045 6.63104 6.77129 6.84835 7.35475 7.45570 7.67421 7.76601 7.86621 8.14752 8.19178 8.44984 9.28932 9.91926 10.40489 11.36808 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.002465 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.024000 B =11358.195677 C =12380.370070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.038 4.038 3 H 0.091 0.909 4 C -0.130 4.130 5 C 0.511 3.489 6 O -0.533 6.533 7 N -0.607 5.607 8 C 0.081 3.919 9 C 0.083 3.917 10 C 0.071 3.929 11 H 0.097 0.903 12 O -0.550 6.550 13 C 0.126 3.874 14 N -0.592 5.592 15 C 0.170 3.830 16 C -0.251 4.251 17 H 0.066 0.934 18 C 0.001 3.999 19 N -0.908 5.908 20 Si 0.902 3.098 21 H -0.278 1.278 22 H -0.290 1.290 23 H -0.291 1.291 24 C -0.029 4.029 25 C -0.168 4.168 26 C 0.098 3.902 27 N -0.492 5.492 28 C 0.098 3.902 29 C -0.170 4.170 30 H 0.054 0.946 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.050 0.950 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.074 0.926 39 H 0.090 0.910 40 H 0.357 0.643 41 H 0.037 0.963 42 H 0.056 0.944 43 H 0.026 0.974 44 H 0.037 0.963 45 H 0.000 1.000 46 H 0.251 0.749 47 H 0.135 0.865 48 H 0.155 0.845 49 H 0.154 0.846 50 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.564 -5.499 -16.425 25.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.057 4.057 3 H 0.109 0.891 4 C -0.171 4.171 5 C 0.299 3.701 6 O -0.410 6.410 7 N -0.340 5.340 8 C -0.063 4.063 9 C -0.040 4.040 10 C 0.008 3.992 11 H 0.115 0.885 12 O -0.353 6.353 13 C -0.003 4.003 14 N -0.314 5.314 15 C 0.025 3.975 16 C -0.381 4.381 17 H 0.084 0.916 18 C -0.197 4.197 19 N -0.553 5.553 20 Si 0.733 3.267 21 H -0.203 1.203 22 H -0.216 1.216 23 H -0.218 1.218 24 C -0.037 4.037 25 C -0.188 4.188 26 C -0.058 4.058 27 N -0.201 5.201 28 C -0.059 4.059 29 C -0.190 4.190 30 H 0.073 0.927 31 H 0.071 0.929 32 H 0.105 0.895 33 H 0.109 0.891 34 H 0.113 0.887 35 H 0.069 0.931 36 H 0.098 0.902 37 H 0.086 0.914 38 H 0.093 0.907 39 H 0.108 0.892 40 H 0.202 0.798 41 H 0.056 0.944 42 H 0.074 0.926 43 H 0.044 0.956 44 H 0.056 0.944 45 H 0.018 0.982 46 H 0.061 0.939 47 H 0.153 0.847 48 H 0.172 0.828 49 H 0.171 0.829 50 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 17.928 -5.484 -17.554 25.683 hybrid contribution -0.786 0.560 0.836 1.277 sum 17.142 -4.924 -16.718 24.446 Atomic orbital electron populations 1.21975 0.92845 1.02133 1.03817 1.19955 0.97360 0.99203 0.89144 0.89117 1.21744 1.02637 1.00350 0.92320 1.20519 0.79416 0.85735 0.84402 1.90700 1.39482 1.24657 1.86174 1.47777 1.55367 1.24767 1.06079 1.21799 0.94815 0.85836 1.03806 1.22344 0.97832 0.97525 0.86307 1.23272 0.94049 0.82938 0.98939 0.88535 1.86642 1.66100 1.27071 1.55480 1.21285 0.88877 0.96408 0.93729 1.43705 0.99942 1.43915 1.43809 1.20727 0.95707 0.89717 0.91338 1.19212 0.86681 1.34313 0.97914 0.91591 1.24996 0.98552 1.01063 0.95100 1.70091 1.25712 1.53814 1.05675 0.86208 0.84083 0.77423 0.79023 1.20273 1.21642 1.21760 1.20386 0.93865 0.93858 0.95570 1.22062 1.01915 0.95338 0.99470 1.22768 0.93027 0.99975 0.90035 1.67673 1.12574 1.09278 1.30612 1.22755 0.96924 0.90405 0.95782 1.22117 0.99505 1.01626 0.95755 0.92685 0.92893 0.89517 0.89054 0.88661 0.93110 0.90233 0.91356 0.90734 0.89163 0.79795 0.94439 0.92614 0.95569 0.94421 0.98152 0.93907 0.84747 0.82806 0.82855 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 8.76 37.16 0.33 -1.35 16 2 C -0.04 -0.36 2.24 -91.77 -0.21 -0.57 16 3 H 0.09 0.93 7.76 -51.93 -0.40 0.53 16 4 C -0.13 -1.19 3.48 -27.88 -0.10 -1.29 16 5 C 0.51 6.57 7.39 -10.99 -0.08 6.49 16 6 O -0.53 -8.83 13.55 5.55 0.08 -8.75 16 7 N -0.61 -7.17 2.84 -181.57 -0.52 -7.69 16 8 C 0.08 0.66 10.06 59.85 0.60 1.27 16 9 C 0.08 1.10 5.07 -4.04 -0.02 1.08 16 10 C 0.07 1.21 3.48 -26.73 -0.09 1.12 16 11 H 0.10 2.04 8.14 -51.93 -0.42 1.62 16 12 O -0.55 -9.06 10.97 -35.23 -0.39 -9.45 16 13 C 0.13 2.51 5.34 -4.04 -0.02 2.49 16 14 N -0.59 -15.03 2.84 -181.12 -0.51 -15.54 16 15 C 0.17 4.22 8.66 59.84 0.52 4.74 16 16 C -0.25 -7.13 9.65 -15.06 -0.15 -7.27 16 17 H 0.07 1.87 7.87 -52.49 -0.41 1.46 16 18 C 0.00 0.03 5.09 -17.43 -0.09 -0.06 16 19 N -0.91 -27.09 10.76 55.49 0.60 -26.49 16 20 Si 0.90 22.61 29.57 -169.99 -5.03 17.58 16 21 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 C -0.03 -0.25 4.80 -104.32 -0.50 -0.75 16 25 C -0.17 -1.37 8.89 -39.44 -0.35 -1.72 16 26 C 0.10 0.84 11.18 -17.55 -0.20 0.64 16 27 N -0.49 -4.91 10.36 -13.25 -0.14 -5.05 16 28 C 0.10 0.82 11.18 -17.55 -0.20 0.63 16 29 C -0.17 -1.38 9.76 -39.44 -0.39 -1.77 16 30 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.05 0.54 7.50 -51.93 -0.39 0.15 16 32 H 0.09 1.23 5.95 -51.93 -0.31 0.92 16 33 H 0.09 0.68 8.10 -51.93 -0.42 0.26 16 34 H 0.10 0.77 6.91 -51.93 -0.36 0.41 16 35 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.08 0.66 7.11 -51.93 -0.37 0.29 16 37 H 0.07 0.48 6.45 -51.93 -0.33 0.15 16 38 H 0.07 0.79 8.07 -51.93 -0.42 0.37 16 39 H 0.09 1.31 7.42 -51.93 -0.39 0.92 16 40 H 0.36 4.55 8.79 45.56 0.40 4.95 16 41 H 0.04 0.66 8.07 -51.93 -0.42 0.24 16 42 H 0.06 1.14 8.04 -51.93 -0.42 0.72 16 43 H 0.03 0.70 7.33 -51.93 -0.38 0.32 16 44 H 0.04 1.03 7.37 -51.93 -0.38 0.64 16 45 H 0.00 0.00 7.00 -51.93 -0.36 -0.36 16 46 H 0.25 7.23 8.31 -40.82 -0.34 6.89 16 47 H 0.13 0.91 7.35 -52.48 -0.39 0.53 16 48 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 49 H 0.15 0.90 8.06 -52.49 -0.42 0.47 16 50 H 0.13 0.86 8.01 -52.49 -0.42 0.44 16 LS Contribution 401.19 15.07 6.05 6.05 Total: -1.00 -35.13 401.19 -8.22 -43.35 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: -7.42 Total: 2.33 kcal Atomic # 6 Polarization: 4.60 SS G_CDS: -0.94 Total: 3.67 kcal Atomic # 7 Polarization: -54.20 SS G_CDS: -0.57 Total: -54.77 kcal Atomic # 8 Polarization: -17.89 SS G_CDS: -0.31 Total: -18.20 kcal Atomic # 14 Polarization: 22.61 SS G_CDS: -5.03 Total: 17.58 kcal Total LS contribution 6.05 Total: 6.05 kcal Total: -35.13 -8.22 -43.35 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725716282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.880 kcal (2) G-P(sol) polarization free energy of solvation -35.133 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.352 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.472 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds