Wall clock time and date at job start Tue Mar 31 2020 19:26:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.47450 * 2 1 4 4 C 1.52999 * 109.47292 * 120.00045 * 2 1 3 5 5 C 1.50704 * 109.46990 * 295.00123 * 4 2 1 6 6 O 1.21283 * 119.99839 * 359.97438 * 5 4 2 7 7 N 1.34772 * 119.99612 * 180.27321 * 5 4 2 8 8 C 1.46499 * 120.00254 * 359.72570 * 7 5 4 9 9 C 1.46498 * 119.99805 * 179.71985 * 7 5 4 10 10 C 1.53007 * 109.46913 * 90.00215 * 9 7 5 11 11 H 1.09001 * 109.46992 * 305.00197 * 10 9 7 12 12 O 1.42898 * 109.46862 * 64.99998 * 10 9 7 13 13 C 1.53004 * 109.47146 * 184.99958 * 10 9 7 14 14 N 1.46500 * 109.46971 * 179.97438 * 13 10 9 15 15 C 1.46494 * 119.99797 * 90.00144 * 14 13 10 16 16 C 1.36937 * 119.99868 * 270.00010 * 14 13 10 17 17 H 1.08000 * 120.00184 * 23.19132 * 16 14 13 18 18 C 1.38814 * 120.00173 * 203.19061 * 16 14 13 19 19 N 1.31624 * 119.99374 * 13.71687 * 18 16 14 20 20 Si 1.86791 * 120.00253 * 193.71829 * 18 16 14 21 21 H 1.48498 * 109.47382 * 359.97438 * 20 18 16 22 22 H 1.48502 * 109.47211 * 119.99806 * 20 18 16 23 23 H 1.48505 * 109.46977 * 239.99690 * 20 18 16 24 24 C 1.50707 * 109.47153 * 240.00101 * 2 1 3 25 25 C 1.38643 * 120.78508 * 299.72260 * 24 2 1 26 26 C 1.38213 * 119.15871 * 179.75386 * 25 24 2 27 27 N 1.31864 * 120.76154 * 0.53466 * 26 25 24 28 28 C 1.31868 * 121.72924 * 359.73040 * 27 26 25 29 29 C 1.38203 * 120.76350 * 359.97438 * 28 27 26 30 30 H 1.09007 * 109.46821 * 59.99535 * 1 2 3 31 31 H 1.08990 * 109.47254 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46659 * 300.00239 * 1 2 3 33 33 H 1.08995 * 109.47519 * 174.99547 * 4 2 1 34 34 H 1.09001 * 109.47103 * 54.99795 * 4 2 1 35 35 H 1.08994 * 109.47310 * 90.00128 * 8 7 5 36 36 H 1.09001 * 109.47129 * 209.99882 * 8 7 5 37 37 H 1.08999 * 109.46904 * 329.99738 * 8 7 5 38 38 H 1.09002 * 109.47369 * 210.00186 * 9 7 5 39 39 H 1.09002 * 109.47362 * 330.00365 * 9 7 5 40 40 H 0.96695 * 114.00055 * 60.00743 * 12 10 9 41 41 H 1.08995 * 109.47025 * 300.00255 * 13 10 9 42 42 H 1.09005 * 109.46753 * 59.99740 * 13 10 9 43 43 H 1.09005 * 109.47118 * 95.15927 * 15 14 13 44 44 H 1.08998 * 109.46951 * 215.15291 * 15 14 13 45 45 H 1.08993 * 109.47373 * 335.15441 * 15 14 13 46 46 H 0.97004 * 119.99210 * 180.02562 * 19 18 16 47 47 H 1.08004 * 120.42410 * 359.97438 * 25 24 2 48 48 H 1.08002 * 119.61791 * 180.24523 * 26 25 24 49 49 H 1.08002 * 119.62022 * 180.02562 * 28 27 26 50 50 H 1.07999 * 120.42225 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 1.6413 0.0571 2.4766 6 8 1.0117 1.0874 2.3632 7 7 1.9897 -0.3888 3.6998 8 6 2.7507 -1.6331 3.8366 9 6 1.6074 0.3710 4.8926 10 6 0.2417 -0.1096 5.3874 11 1 -0.4836 -0.0399 4.5766 12 8 0.3429 -1.4676 5.8204 13 6 -0.2143 0.7659 6.5564 14 7 -1.5223 0.3061 7.0297 15 6 -1.6047 -0.7122 8.0796 16 6 -2.6677 0.8281 6.4906 17 1 -2.6481 1.2704 5.5055 18 6 -3.8541 0.7889 7.2103 19 7 -3.8350 0.5051 8.4954 20 14 -5.4774 1.1388 6.3550 21 1 -5.2284 1.4292 4.9201 22 1 -6.3650 -0.0458 6.4739 23 1 -6.1293 2.3117 6.9911 24 6 2.0324 -0.7104 -1.2305 25 6 1.7122 -2.0391 -1.4632 26 6 2.1868 -2.6562 -2.6053 27 7 2.9438 -1.9990 -3.4619 28 6 3.2727 -0.7365 -3.2703 29 6 2.8301 -0.0523 -2.1540 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 -0.3633 0.5139 0.8900 33 1 3.1263 -0.7996 1.2056 34 1 1.6054 -1.7198 1.2951 35 1 3.8176 -1.4109 3.8140 36 1 2.4991 -2.1106 4.7836 37 1 2.5017 -2.3036 3.0142 38 1 2.3514 0.2184 5.6745 39 1 1.5520 1.4312 4.6458 40 1 0.9720 -1.6045 6.5419 41 1 0.5110 0.6961 7.3670 42 1 -0.2914 1.8018 6.2260 43 1 -1.7179 -0.2263 9.0489 44 1 -2.4638 -1.3568 7.8939 45 1 -0.6940 -1.3109 8.0775 46 1 -4.6641 0.4773 8.9982 47 1 1.0967 -2.5841 -0.7628 48 1 1.9386 -3.6899 -2.7959 49 1 3.8945 -0.2310 -3.9944 50 1 3.1032 0.9815 -2.0023 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001725716282.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:26:58 Heat of formation + Delta-G solvation = -53.497579 kcal Electronic energy + Delta-G solvation = -29278.839045 eV Core-core repulsion = 25305.898577 eV Total energy + Delta-G solvation = -3972.940469 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.49342 -40.80100 -38.99776 -37.02837 -36.52601 -35.91220 -33.32970 -32.28747 -32.00885 -31.25116 -29.09401 -28.02125 -27.74996 -26.48972 -25.19256 -24.32440 -23.66238 -22.31151 -21.61779 -20.00819 -18.84131 -18.39325 -17.61199 -17.34090 -17.21350 -16.93522 -16.74000 -16.40831 -16.28279 -16.11613 -15.50941 -15.38398 -15.01009 -14.80077 -14.73154 -14.49035 -14.32495 -14.01129 -13.91514 -13.66558 -13.47673 -13.20263 -13.02875 -12.84336 -12.75410 -12.66525 -12.51385 -12.47584 -12.24697 -12.20782 -12.05385 -11.97933 -11.82225 -11.76051 -11.28896 -10.77432 -10.62795 -10.47359 -10.37308 -10.04749 -9.54298 -8.67861 -7.84064 -5.32762 0.24092 0.30113 1.40475 1.41874 1.52738 1.65941 2.07738 2.47898 2.89613 3.26153 3.39666 3.55482 3.63853 3.66664 3.73106 3.87503 3.98168 4.13882 4.14564 4.21392 4.23142 4.25942 4.33919 4.43373 4.50859 4.55261 4.61860 4.68213 4.73636 4.77590 4.85865 4.89410 4.91967 4.93673 4.97534 5.05198 5.07438 5.12078 5.24305 5.34194 5.39216 5.49825 5.58931 5.60610 5.72509 5.81616 6.31320 6.45166 7.01913 7.06669 7.14572 7.23758 7.88029 8.28908 9.16897 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015509 B = 0.002465 C = 0.002261 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1805.024000 B =11358.195677 C =12380.370070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.030 4.030 3 H 0.080 0.920 4 C -0.120 4.120 5 C 0.501 3.499 6 O -0.580 6.580 7 N -0.608 5.608 8 C 0.074 3.926 9 C 0.094 3.906 10 C 0.094 3.906 11 H 0.049 0.951 12 O -0.559 6.559 13 C 0.122 3.878 14 N -0.611 5.611 15 C 0.186 3.814 16 C -0.259 4.259 17 H 0.056 0.944 18 C -0.053 4.053 19 N -0.935 5.935 20 Si 0.962 3.038 21 H -0.274 1.274 22 H -0.288 1.288 23 H -0.287 1.287 24 C -0.035 4.035 25 C -0.168 4.168 26 C 0.090 3.910 27 N -0.517 5.517 28 C 0.090 3.910 29 C -0.173 4.173 30 H 0.054 0.946 31 H 0.061 0.939 32 H 0.052 0.948 33 H 0.117 0.883 34 H 0.111 0.889 35 H 0.076 0.924 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.112 0.888 39 H 0.073 0.927 40 H 0.378 0.622 41 H 0.069 0.931 42 H 0.042 0.958 43 H 0.001 0.999 44 H 0.003 0.997 45 H 0.042 0.958 46 H 0.248 0.752 47 H 0.148 0.852 48 H 0.174 0.826 49 H 0.174 0.826 50 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.777 -6.824 -17.313 27.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.049 4.049 3 H 0.098 0.902 4 C -0.160 4.160 5 C 0.291 3.709 6 O -0.461 6.461 7 N -0.340 5.340 8 C -0.068 4.068 9 C -0.030 4.030 10 C 0.031 3.969 11 H 0.067 0.933 12 O -0.365 6.365 13 C -0.005 4.005 14 N -0.334 5.334 15 C 0.041 3.959 16 C -0.390 4.390 17 H 0.074 0.926 18 C -0.248 4.248 19 N -0.582 5.582 20 Si 0.791 3.209 21 H -0.198 1.198 22 H -0.215 1.215 23 H -0.214 1.214 24 C -0.043 4.043 25 C -0.188 4.188 26 C -0.066 4.066 27 N -0.227 5.227 28 C -0.066 4.066 29 C -0.193 4.193 30 H 0.073 0.927 31 H 0.080 0.920 32 H 0.071 0.929 33 H 0.135 0.865 34 H 0.129 0.871 35 H 0.094 0.906 36 H 0.101 0.899 37 H 0.101 0.899 38 H 0.130 0.870 39 H 0.091 0.909 40 H 0.226 0.774 41 H 0.087 0.913 42 H 0.061 0.939 43 H 0.019 0.981 44 H 0.022 0.978 45 H 0.061 0.939 46 H 0.058 0.942 47 H 0.166 0.834 48 H 0.191 0.809 49 H 0.192 0.808 50 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 20.206 -6.835 -18.450 28.203 hybrid contribution -1.398 0.952 1.100 2.018 sum 18.808 -5.883 -17.350 26.256 Atomic orbital electron populations 1.21898 0.94387 1.02098 1.02066 1.19807 0.95966 0.99016 0.90104 0.90159 1.21740 1.04174 1.00097 0.89987 1.21234 0.78582 0.85441 0.85683 1.90689 1.41553 1.26893 1.86919 1.47892 1.55111 1.25740 1.05223 1.22072 0.95741 0.84335 1.04624 1.22083 0.96307 0.96657 0.87965 1.22672 0.95252 0.82824 0.96123 0.93312 1.86600 1.67190 1.26176 1.56570 1.21517 0.87228 0.96236 0.95558 1.43933 1.01154 1.44310 1.43961 1.20466 0.96213 0.89242 0.89966 1.19406 0.88289 1.33714 0.97600 0.92593 1.25709 1.01502 1.01767 0.95795 1.70227 1.26118 1.55180 1.06703 0.85272 0.80327 0.77145 0.78160 1.19837 1.21502 1.21404 1.20319 0.94467 0.94203 0.95303 1.22208 1.01779 0.95141 0.99660 1.23131 0.92687 1.00907 0.89883 1.67699 1.13427 1.10122 1.31462 1.23124 0.97020 0.90165 0.96282 1.22306 0.99166 1.02320 0.95467 0.92691 0.92034 0.92919 0.86517 0.87084 0.90551 0.89923 0.89947 0.86965 0.90865 0.77410 0.91325 0.93915 0.98091 0.97832 0.93927 0.94240 0.83393 0.80895 0.80847 0.83388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.31 8.76 71.98 0.63 -2.68 16 2 C -0.03 -0.55 2.24 -11.54 -0.03 -0.57 16 3 H 0.08 1.63 7.76 -2.39 -0.02 1.62 16 4 C -0.12 -1.95 3.48 29.85 0.10 -1.85 16 5 C 0.50 12.45 7.39 87.66 0.65 13.10 16 6 O -0.58 -19.81 13.55 -3.04 -0.04 -19.85 16 7 N -0.61 -13.10 2.84 -846.75 -2.40 -15.50 16 8 C 0.07 0.94 10.06 127.77 1.28 2.22 16 9 C 0.09 2.32 5.07 86.38 0.44 2.75 16 10 C 0.09 3.16 3.48 30.60 0.11 3.26 16 11 H 0.05 2.13 8.14 -2.39 -0.02 2.11 16 12 O -0.56 -17.20 10.97 -148.98 -1.63 -18.84 16 13 C 0.12 4.78 5.34 86.38 0.46 5.24 16 14 N -0.61 -31.25 2.84 -726.95 -2.07 -33.32 16 15 C 0.19 9.24 8.66 127.77 1.11 10.35 16 16 C -0.26 -15.04 9.65 84.03 0.81 -14.23 16 17 H 0.06 3.28 7.87 -2.91 -0.02 3.26 16 18 C -0.05 -3.09 5.09 84.86 0.43 -2.66 16 19 N -0.94 -57.01 10.76 21.65 0.23 -56.78 16 20 Si 0.96 47.44 29.57 68.60 2.03 49.47 16 21 H -0.27 -13.14 7.11 99.48 0.71 -12.43 16 22 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 23 H -0.29 -13.91 7.11 99.48 0.71 -13.21 16 24 C -0.03 -0.55 4.80 -19.67 -0.09 -0.64 16 25 C -0.17 -2.39 8.89 22.36 0.20 -2.20 16 26 C 0.09 1.36 11.18 84.68 0.95 2.31 16 27 N -0.52 -9.49 10.36 -195.84 -2.03 -11.52 16 28 C 0.09 1.36 11.18 84.68 0.95 2.31 16 29 C -0.17 -2.51 9.76 22.36 0.22 -2.30 16 30 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 31 H 0.06 1.23 7.50 -2.39 -0.02 1.21 16 32 H 0.05 1.57 5.95 -2.39 -0.01 1.56 16 33 H 0.12 1.33 8.10 -2.39 -0.02 1.31 16 34 H 0.11 1.47 6.91 -2.39 -0.02 1.46 16 35 H 0.08 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.08 1.03 7.11 -2.39 -0.02 1.01 16 37 H 0.08 0.83 6.45 -2.39 -0.02 0.82 16 38 H 0.11 1.94 8.07 -2.39 -0.02 1.92 16 39 H 0.07 2.09 7.42 -2.39 -0.02 2.08 16 40 H 0.38 8.19 8.79 -74.06 -0.65 7.54 16 41 H 0.07 2.26 8.07 -2.39 -0.02 2.25 16 42 H 0.04 1.77 8.04 -2.38 -0.02 1.75 16 43 H 0.00 0.05 7.33 -2.38 -0.02 0.03 16 44 H 0.00 0.16 7.37 -2.39 -0.02 0.14 16 45 H 0.04 1.71 7.00 -2.39 -0.02 1.69 16 46 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 47 H 0.15 1.63 7.35 -2.91 -0.02 1.60 16 48 H 0.17 1.75 8.06 -2.91 -0.02 1.72 16 49 H 0.17 1.71 8.06 -2.91 -0.02 1.68 16 50 H 0.15 1.65 8.01 -2.91 -0.02 1.62 16 Total: -1.00 -79.48 401.19 2.58 -76.90 By element: Atomic # 1 Polarization: 14.74 SS G_CDS: 0.28 Total: 15.02 kcal Atomic # 6 Polarization: 6.21 SS G_CDS: 8.21 Total: 14.42 kcal Atomic # 7 Polarization: -110.86 SS G_CDS: -6.26 Total: -117.12 kcal Atomic # 8 Polarization: -37.01 SS G_CDS: -1.68 Total: -38.69 kcal Atomic # 14 Polarization: 47.44 SS G_CDS: 2.03 Total: 49.47 kcal Total: -79.48 2.58 -76.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001725716282.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.398 kcal (2) G-P(sol) polarization free energy of solvation -79.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.581 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.896 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.498 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds