Wall clock time and date at job start Tue Mar 31 2020 19:29:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53003 * 109.46945 * 2 1 4 4 C 1.50698 * 109.47258 * 120.00424 * 2 1 3 5 5 C 1.35315 * 126.66784 * 119.99948 * 4 2 1 6 6 C 1.42271 * 103.92251 * 179.97438 * 5 4 2 7 7 C 1.48333 * 126.93643 * 180.02562 * 6 5 4 8 8 O 1.21489 * 120.00331 * 354.10794 * 7 6 5 9 9 N 1.34781 * 119.99541 * 174.10669 * 7 6 5 10 10 C 1.46927 * 120.63230 * 6.02538 * 9 7 6 11 11 C 1.53186 * 108.77389 * 233.58621 * 10 9 7 12 12 C 1.53045 * 109.31405 * 305.36556 * 11 10 9 13 13 C 1.53038 * 109.53933 * 61.36929 * 12 11 10 14 14 C 1.46929 * 120.62510 * 186.00436 * 9 7 6 15 15 H 1.08999 * 109.58399 * 246.34403 * 14 9 7 16 16 C 1.53000 * 109.59016 * 6.62554 * 14 9 7 17 17 H 1.08998 * 109.46703 * 302.12633 * 16 14 9 18 18 C 1.52995 * 109.46944 * 182.12328 * 16 14 9 19 19 N 1.46505 * 109.46967 * 62.12152 * 16 14 9 20 20 C 1.36930 * 119.99854 * 205.00012 * 19 16 14 21 21 H 1.08002 * 120.00323 * 0.02562 * 20 19 16 22 22 C 1.38821 * 119.99749 * 180.27801 * 20 19 16 23 23 N 1.31612 * 119.99738 * 179.72458 * 22 20 19 24 24 Si 1.86791 * 119.99960 * 359.72598 * 22 20 19 25 25 H 1.48500 * 109.47450 * 89.99782 * 24 22 20 26 26 H 1.48504 * 109.47137 * 209.99801 * 24 22 20 27 27 H 1.48501 * 109.47349 * 329.99981 * 24 22 20 28 28 N 1.30979 * 106.12103 * 0.25985 * 6 5 4 29 29 O 1.20905 * 111.44444 * 359.53640 * 28 6 5 30 30 H 1.09006 * 109.47063 * 299.99873 * 1 2 3 31 31 H 1.09004 * 109.47156 * 59.99873 * 1 2 3 32 32 H 1.08997 * 109.47286 * 180.02562 * 1 2 3 33 33 H 1.09000 * 109.46751 * 240.00436 * 2 1 3 34 34 H 1.08997 * 109.46872 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47195 * 300.00359 * 3 2 1 36 36 H 1.09000 * 109.47039 * 60.00613 * 3 2 1 37 37 H 1.08001 * 128.03956 * 0.02562 * 5 4 2 38 38 H 1.09000 * 109.58602 * 353.37376 * 10 9 7 39 39 H 1.08997 * 109.58184 * 113.65678 * 10 9 7 40 40 H 1.09004 * 109.50044 * 65.31994 * 11 10 9 41 41 H 1.09001 * 109.49828 * 185.41408 * 11 10 9 42 42 H 1.08999 * 109.45812 * 181.38870 * 12 11 10 43 43 H 1.08991 * 109.46045 * 301.34390 * 12 11 10 44 44 H 1.08988 * 109.50165 * 178.68545 * 13 12 11 45 45 H 1.09000 * 109.50007 * 58.57978 * 13 12 11 46 46 H 1.09000 * 109.47097 * 294.94689 * 18 16 14 47 47 H 1.08994 * 109.47430 * 54.95042 * 18 16 14 48 48 H 1.09008 * 109.47036 * 174.94729 * 18 16 14 49 49 H 0.96998 * 119.99834 * 25.00169 * 19 16 14 50 50 H 0.97003 * 120.00012 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 6 2.8134 -1.8150 1.2634 6 6 2.9920 -2.0665 2.6523 7 6 3.7724 -3.1689 3.2654 8 8 4.2535 -4.0360 2.5635 9 7 3.9478 -3.2085 4.6011 10 6 3.2649 -2.2446 5.4748 11 6 4.3085 -1.5552 6.3591 12 6 5.1192 -2.6165 7.1066 13 6 5.8515 -3.5052 6.0987 14 6 4.8253 -4.2168 5.2112 15 1 4.2301 -4.9021 5.8147 16 6 5.5504 -4.9976 4.1134 17 1 4.8177 -5.4619 3.4534 18 6 6.4228 -6.0815 4.7497 19 7 6.3942 -4.0833 3.3398 20 6 6.7286 -4.3882 2.0475 21 1 6.3701 -5.3026 1.5982 22 6 7.5329 -3.5246 1.3164 23 7 7.8588 -3.8203 0.0760 24 14 8.1525 -1.9429 2.0932 25 1 9.4558 -2.1955 2.7585 26 1 8.3261 -0.9095 1.0408 27 1 7.1682 -1.4660 3.0977 28 7 2.3239 -1.1311 3.2802 29 8 1.7929 -0.3708 2.5045 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3634 -1.0276 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1299 1.4425 -0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6767 1.9563 0.8900 37 1 3.2098 -2.3749 0.4293 38 1 2.7519 -1.4997 4.8664 39 1 2.5410 -2.7673 6.0999 40 1 4.9760 -0.9590 5.7369 41 1 3.8060 -0.9082 7.0780 42 1 5.8461 -2.1279 7.7554 43 1 4.4481 -3.2281 7.7096 44 1 6.4470 -4.2460 6.6320 45 1 6.5044 -2.8907 5.4788 46 1 7.2116 -5.6136 5.3387 47 1 5.8093 -6.7082 5.3969 48 1 6.8690 -6.6949 3.9669 49 1 6.7159 -3.2619 3.7432 50 1 8.4210 -3.2171 -0.4347 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731294348.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:35 Heat of formation + Delta-G solvation = 58.703391 kcal Electronic energy + Delta-G solvation = -31670.208125 eV Core-core repulsion = 27702.133055 eV Total energy + Delta-G solvation = -3968.075069 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.14687 -41.63545 -38.43057 -37.22225 -36.99628 -35.06351 -34.10078 -33.72521 -31.97825 -31.56478 -29.97250 -28.04042 -27.23191 -25.66714 -25.20153 -24.48529 -24.15859 -22.94842 -21.82021 -21.18362 -19.89399 -19.28032 -18.82915 -18.39055 -17.66744 -17.12653 -16.54034 -16.18322 -15.97469 -15.88329 -15.48420 -15.39213 -15.07155 -14.88964 -14.67796 -14.53316 -14.24786 -14.14154 -14.12779 -13.65755 -13.46267 -13.33209 -13.03039 -13.01345 -12.92665 -12.70099 -12.49392 -12.39694 -12.20432 -12.07609 -11.97141 -11.86641 -11.83665 -11.66433 -11.55142 -11.41166 -11.14857 -10.92564 -10.48380 -10.07593 -9.59340 -9.01474 -7.89973 -5.15030 0.07000 0.67988 1.24181 1.27663 1.33085 1.74219 1.97109 2.29183 2.49135 2.84618 3.33251 3.41307 3.66054 3.71042 3.82807 3.90617 3.96947 4.00267 4.02626 4.12610 4.14501 4.27730 4.30551 4.34430 4.52013 4.54224 4.72420 4.76807 4.81542 4.83143 4.87513 4.92097 4.93963 4.95712 4.98334 5.02661 5.05126 5.12896 5.14289 5.20780 5.34545 5.37625 5.38882 5.43666 5.49564 5.81366 5.94277 6.32431 6.39103 6.96206 7.19714 7.30321 7.97459 8.16885 9.34469 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.010003 B = 0.005421 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2798.416336 B = 5163.874587 C = 6663.164073 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.014 4.014 3 C -0.149 4.149 4 C -0.001 4.001 5 C -0.208 4.208 6 C -0.029 4.029 7 C 0.567 3.433 8 O -0.489 6.489 9 N -0.600 5.600 10 C 0.074 3.926 11 C -0.129 4.129 12 C -0.111 4.111 13 C -0.130 4.130 14 C 0.145 3.855 15 H 0.103 0.897 16 C 0.162 3.838 17 H 0.065 0.935 18 C -0.158 4.158 19 N -0.732 5.732 20 C -0.150 4.150 21 H 0.047 0.953 22 C -0.077 4.077 23 N -0.994 5.994 24 Si 0.938 3.062 25 H -0.280 1.280 26 H -0.301 1.301 27 H -0.276 1.276 28 N -0.336 5.336 29 O 0.117 5.883 30 H 0.066 0.934 31 H 0.092 0.908 32 H 0.055 0.945 33 H 0.111 0.889 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.067 0.933 37 H 0.166 0.834 38 H 0.117 0.883 39 H 0.087 0.913 40 H 0.035 0.965 41 H 0.101 0.899 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.095 0.905 45 H 0.034 0.966 46 H 0.054 0.946 47 H 0.075 0.925 48 H 0.029 0.971 49 H 0.355 0.645 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.270 10.000 11.415 22.990 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.033 4.033 3 C -0.206 4.206 4 C -0.065 4.065 5 C -0.231 4.231 6 C -0.186 4.186 7 C 0.351 3.649 8 O -0.360 6.360 9 N -0.335 5.335 10 C -0.048 4.048 11 C -0.168 4.168 12 C -0.148 4.148 13 C -0.169 4.169 14 C 0.043 3.957 15 H 0.121 0.879 16 C 0.055 3.945 17 H 0.083 0.917 18 C -0.218 4.218 19 N -0.375 5.375 20 C -0.282 4.282 21 H 0.065 0.935 22 C -0.266 4.266 23 N -0.649 5.649 24 Si 0.769 3.231 25 H -0.207 1.207 26 H -0.228 1.228 27 H -0.203 1.203 28 N -0.042 5.042 29 O 0.048 5.952 30 H 0.085 0.915 31 H 0.111 0.889 32 H 0.074 0.926 33 H 0.129 0.871 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.086 0.914 37 H 0.184 0.816 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.054 0.946 41 H 0.119 0.881 42 H 0.096 0.904 43 H 0.106 0.894 44 H 0.113 0.887 45 H 0.053 0.947 46 H 0.073 0.927 47 H 0.094 0.906 48 H 0.048 0.952 49 H 0.189 0.811 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -17.199 9.636 12.171 23.168 hybrid contribution 1.392 0.414 -0.996 1.761 sum -15.807 10.050 11.175 21.811 Atomic orbital electron populations 1.21879 0.91181 1.02853 1.04224 1.20090 0.98137 0.96413 0.88659 1.21907 1.00878 0.93507 1.04340 1.24934 0.98402 0.95684 0.87478 1.22557 1.03749 1.00365 0.96458 1.23832 1.02505 0.98606 0.93704 1.17429 0.80118 0.84418 0.82922 1.91015 1.45707 1.37059 1.62185 1.47886 1.47105 1.33940 1.04546 1.22679 0.95276 0.92790 0.94074 1.21885 0.97785 0.98347 0.98754 1.21518 0.99425 0.96926 0.96937 1.21994 0.97630 0.99840 0.97413 1.21723 0.90834 0.89198 0.93981 0.87928 1.20851 0.92134 0.90686 0.90840 0.91742 1.22361 1.00435 0.99015 0.99955 1.42781 1.60170 1.23388 1.11201 1.18779 1.18549 1.02511 0.88404 0.93484 1.25144 1.03339 1.01454 0.96668 1.69856 1.44964 1.39440 1.10686 0.85630 0.78469 0.81788 0.77179 1.20717 1.22777 1.20257 1.73736 1.11313 1.03094 1.16085 1.84678 1.54294 1.42334 1.13936 0.91476 0.88915 0.92569 0.87052 0.93648 0.88718 0.91369 0.81646 0.86614 0.89523 0.94616 0.88102 0.90436 0.89394 0.88697 0.94702 0.92705 0.90586 0.95164 0.81123 0.94214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 9.18 71.98 0.66 -1.18 16 2 C -0.01 -0.24 3.34 -11.54 -0.04 -0.28 16 3 C -0.15 -2.27 9.18 71.98 0.66 -1.61 16 4 C 0.00 -0.04 5.98 25.01 0.15 0.11 16 5 C -0.21 -7.25 10.91 22.60 0.25 -7.01 16 6 C -0.03 -1.07 6.95 42.96 0.30 -0.77 16 7 C 0.57 23.66 7.14 86.93 0.62 24.28 16 8 O -0.49 -24.54 10.13 -3.68 -0.04 -24.57 16 9 N -0.60 -20.37 2.96 -797.86 -2.37 -22.74 16 10 C 0.07 1.93 6.34 86.36 0.55 2.48 16 11 C -0.13 -2.96 6.08 30.67 0.19 -2.77 16 12 C -0.11 -2.26 5.88 30.62 0.18 -2.08 16 13 C -0.13 -3.61 4.81 30.67 0.15 -3.46 16 14 C 0.15 4.60 2.74 44.98 0.12 4.72 16 15 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 16 C 0.16 6.66 1.89 44.99 0.08 6.74 16 17 H 0.06 3.07 5.86 -7.37 -0.04 3.03 16 18 C -0.16 -5.56 9.07 71.98 0.65 -4.90 16 19 N -0.73 -36.75 3.29 -322.94 -1.06 -37.81 16 20 C -0.15 -9.20 8.59 84.04 0.72 -8.48 16 21 H 0.05 3.24 8.06 -2.91 -0.02 3.21 16 22 C -0.08 -4.92 5.50 84.87 0.47 -4.45 16 23 N -0.99 -68.01 13.97 21.65 0.30 -67.71 16 24 Si 0.94 50.39 27.73 68.60 1.90 52.29 16 25 H -0.28 -14.56 7.11 99.48 0.71 -13.85 16 26 H -0.30 -16.28 7.11 99.48 0.71 -15.57 16 27 H -0.28 -14.17 6.52 99.48 0.65 -13.52 16 28 N -0.34 -10.55 8.51 -49.51 -0.42 -10.97 16 29 O 0.12 3.18 11.18 71.87 0.80 3.98 16 30 H 0.07 0.82 8.14 -2.38 -0.02 0.80 16 31 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 32 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 33 H 0.11 1.87 8.12 -2.39 -0.02 1.85 16 34 H 0.04 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.09 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.17 6.19 8.06 -2.91 -0.02 6.17 16 38 H 0.12 3.28 3.75 -46.81 -0.18 3.10 16 39 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.03 1.01 8.14 -2.38 -0.02 0.99 16 41 H 0.10 1.70 8.14 -2.39 -0.02 1.68 16 42 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.09 1.41 8.14 -2.39 -0.02 1.39 16 44 H 0.09 2.28 6.93 -2.39 -0.02 2.26 16 45 H 0.03 1.21 6.21 -2.39 -0.01 1.19 16 46 H 0.05 1.81 6.91 -2.39 -0.02 1.80 16 47 H 0.08 2.08 8.14 -2.39 -0.02 2.06 16 48 H 0.03 1.21 8.14 -2.38 -0.02 1.19 16 49 H 0.35 17.72 3.69 -92.71 -0.34 17.37 16 50 H 0.25 16.34 8.31 -92.71 -0.77 15.57 16 Total: -1.00 -80.54 381.97 5.18 -75.37 By element: Atomic # 1 Polarization: 30.47 SS G_CDS: 0.34 Total: 30.82 kcal Atomic # 6 Polarization: -4.36 SS G_CDS: 5.71 Total: 1.35 kcal Atomic # 7 Polarization: -135.68 SS G_CDS: -3.55 Total: -139.23 kcal Atomic # 8 Polarization: -21.36 SS G_CDS: 0.77 Total: -20.59 kcal Atomic # 14 Polarization: 50.39 SS G_CDS: 1.90 Total: 52.29 kcal Total: -80.54 5.18 -75.37 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731294348.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.069 kcal (2) G-P(sol) polarization free energy of solvation -80.541 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.528 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.366 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.703 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds