Wall clock time and date at job start Tue Mar 31 2020 19:29:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53000 * 109.46707 * 2 1 4 4 C 1.50701 * 109.47302 * 119.99296 * 2 1 3 5 5 C 1.35317 * 126.66659 * 120.00231 * 4 2 1 6 6 C 1.42266 * 103.92478 * 179.97438 * 5 4 2 7 7 C 1.48331 * 126.94208 * 179.97438 * 6 5 4 8 8 O 1.21490 * 119.99668 * 6.69115 * 7 6 5 9 9 N 1.34770 * 120.00215 * 186.69029 * 7 6 5 10 10 C 1.46928 * 120.63192 * 6.67611 * 9 7 6 11 11 C 1.53193 * 108.77469 * 126.37131 * 10 9 7 12 12 C 1.53042 * 109.31488 * 54.63299 * 11 10 9 13 13 C 1.53038 * 109.53849 * 298.63955 * 12 11 10 14 14 C 1.46929 * 120.62914 * 186.39983 * 9 7 6 15 15 H 1.09002 * 109.58663 * 113.84417 * 14 9 7 16 16 C 1.52994 * 109.58633 * 353.41902 * 14 9 7 17 17 H 1.09003 * 109.47436 * 308.11421 * 16 14 9 18 18 C 1.53003 * 109.47161 * 188.11377 * 16 14 9 19 19 N 1.46499 * 109.47342 * 68.11549 * 16 14 9 20 20 C 1.36939 * 120.00239 * 188.21591 * 19 16 14 21 21 H 1.08001 * 119.99901 * 359.97438 * 20 19 16 22 22 C 1.38809 * 120.00032 * 179.97438 * 20 19 16 23 23 N 1.31619 * 120.00218 * 359.97438 * 22 20 19 24 24 Si 1.86807 * 119.99892 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46782 * 359.97438 * 24 22 20 26 26 H 1.48504 * 109.46947 * 119.99634 * 24 22 20 27 27 H 1.48495 * 109.47235 * 239.99927 * 24 22 20 28 28 N 1.30987 * 106.12326 * 359.97438 * 6 5 4 29 29 O 1.20909 * 111.43778 * 0.02562 * 28 6 5 30 30 H 1.08997 * 109.47622 * 300.00071 * 1 2 3 31 31 H 1.08997 * 109.47162 * 60.00651 * 1 2 3 32 32 H 1.09001 * 109.46563 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.47622 * 239.99929 * 2 1 3 34 34 H 1.09005 * 109.47315 * 179.97438 * 3 2 1 35 35 H 1.09010 * 109.46947 * 299.99906 * 3 2 1 36 36 H 1.09000 * 109.47554 * 59.99916 * 3 2 1 37 37 H 1.08000 * 128.03277 * 0.02562 * 5 4 2 38 38 H 1.09000 * 109.58852 * 246.15456 * 10 9 7 39 39 H 1.08996 * 109.58327 * 6.58553 * 10 9 7 40 40 H 1.08996 * 109.50259 * 174.59059 * 11 10 9 41 41 H 1.09001 * 109.49426 * 294.65474 * 11 10 9 42 42 H 1.09001 * 109.45404 * 58.65449 * 12 11 10 43 43 H 1.09002 * 109.46326 * 178.62936 * 12 11 10 44 44 H 1.09009 * 109.49595 * 181.31053 * 13 12 11 45 45 H 1.08994 * 109.49710 * 301.41083 * 13 12 11 46 46 H 1.09003 * 109.46982 * 300.00322 * 18 16 14 47 47 H 1.08997 * 109.46772 * 59.99746 * 18 16 14 48 48 H 1.09000 * 109.47100 * 179.97438 * 18 16 14 49 49 H 0.96999 * 120.00154 * 8.21099 * 19 16 14 50 50 H 0.96998 * 119.99640 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7103 1.2305 5 6 2.8135 -1.8147 1.2638 6 6 2.9921 -2.0661 2.6526 7 6 3.7717 -3.1689 3.2659 8 8 4.4399 -3.9030 2.5655 9 7 3.7388 -3.3566 4.6001 10 6 2.8256 -2.5737 5.4439 11 6 1.9869 -3.5377 6.2890 12 6 2.9181 -4.4700 7.0673 13 6 3.7564 -5.2922 6.0858 14 6 4.6112 -4.3521 5.2378 15 1 5.3367 -3.8472 5.8756 16 6 5.3425 -5.1573 4.1619 17 1 4.6194 -5.5475 3.4456 18 6 6.0911 -6.3204 4.8159 19 7 6.2980 -4.2902 3.4680 20 6 6.9494 -4.7440 2.3522 21 1 6.7591 -5.7413 1.9840 22 6 7.8544 -3.9223 1.6945 23 7 8.0860 -2.7067 2.1430 24 14 8.7435 -4.5416 0.1728 25 1 8.3103 -5.9310 -0.1224 26 1 8.4185 -3.6654 -0.9813 27 1 10.2088 -4.5209 0.4129 28 7 2.3291 -1.1270 3.2805 29 8 1.7932 -0.3702 2.5045 30 1 -0.3634 0.5138 0.8899 31 1 -0.3633 0.5137 -0.8900 32 1 -0.3632 -1.0277 0.0005 33 1 1.8934 -0.5138 -0.8899 34 1 3.1300 1.4427 0.0005 35 1 1.6765 1.9564 -0.8901 36 1 1.6766 1.9564 0.8900 37 1 3.2099 -2.3747 0.4297 38 1 3.4025 -1.9209 6.0989 39 1 2.1689 -1.9745 4.8133 40 1 1.3736 -2.9694 6.9882 41 1 1.3430 -4.1275 5.6366 42 1 3.5782 -3.8777 7.7010 43 1 2.3244 -5.1410 7.6881 44 1 4.4027 -5.9726 6.6405 45 1 3.0963 -5.8659 5.4353 46 1 6.8142 -5.9302 5.5322 47 1 5.3802 -6.9655 5.3321 48 1 6.6118 -6.8943 4.0493 49 1 6.4692 -3.3946 3.7989 50 1 8.7181 -2.1324 1.6831 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731294361.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:38 Heat of formation + Delta-G solvation = 57.755667 kcal Electronic energy + Delta-G solvation = -31190.831446 eV Core-core repulsion = 27222.715280 eV Total energy + Delta-G solvation = -3968.116166 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -46.10051 -41.55174 -38.34729 -37.13004 -36.97090 -35.03626 -34.07256 -33.68637 -31.79197 -31.45760 -29.43676 -28.02346 -27.25231 -26.07186 -25.05387 -24.35999 -23.99966 -22.91472 -21.63639 -21.30727 -19.90454 -18.83088 -18.80031 -18.27316 -17.58234 -16.94661 -16.79196 -16.12962 -15.89575 -15.68127 -15.55143 -15.21112 -14.95079 -14.80647 -14.66669 -14.44145 -14.33144 -14.11696 -13.93199 -13.59040 -13.56039 -13.05339 -13.01135 -12.95881 -12.84297 -12.65017 -12.41625 -12.29492 -12.18624 -12.13405 -11.94173 -11.80809 -11.75978 -11.62905 -11.46592 -11.31536 -11.18624 -10.84262 -10.41766 -10.14411 -9.55089 -8.61769 -7.81394 -5.00343 0.13880 0.72720 1.42237 1.43716 1.53094 1.82666 2.04220 2.32196 2.62339 2.94099 3.36714 3.52857 3.70755 3.79468 3.86768 3.99531 4.04253 4.04799 4.11260 4.14575 4.25289 4.32087 4.33765 4.41051 4.54548 4.55960 4.71527 4.82700 4.82926 4.84692 4.87832 4.92735 4.96626 4.98458 5.00849 5.04832 5.09720 5.14303 5.14347 5.22771 5.36538 5.37830 5.39163 5.44087 5.52653 5.59157 5.85073 6.39379 6.44948 7.01505 7.33955 7.45600 8.21717 8.45163 9.44057 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008190 B = 0.005395 C = 0.003471 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3418.130594 B = 5188.281283 C = 8065.318249 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.012 4.012 3 C -0.149 4.149 4 C -0.005 4.005 5 C -0.207 4.207 6 C -0.028 4.028 7 C 0.546 3.454 8 O -0.473 6.473 9 N -0.601 5.601 10 C 0.085 3.915 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.120 4.120 14 C 0.150 3.850 15 H 0.060 0.940 16 C 0.176 3.824 17 H 0.037 0.963 18 C -0.157 4.157 19 N -0.699 5.699 20 C -0.178 4.178 21 H 0.060 0.940 22 C -0.089 4.089 23 N -0.980 5.980 24 Si 0.960 3.040 25 H -0.272 1.272 26 H -0.300 1.300 27 H -0.296 1.296 28 N -0.341 5.341 29 O 0.117 5.883 30 H 0.064 0.936 31 H 0.092 0.908 32 H 0.056 0.944 33 H 0.114 0.886 34 H 0.044 0.956 35 H 0.094 0.906 36 H 0.064 0.936 37 H 0.170 0.830 38 H 0.062 0.938 39 H 0.108 0.892 40 H 0.098 0.902 41 H 0.058 0.942 42 H 0.068 0.932 43 H 0.090 0.910 44 H 0.094 0.906 45 H 0.062 0.938 46 H 0.044 0.956 47 H 0.078 0.922 48 H 0.033 0.967 49 H 0.361 0.639 50 H 0.241 0.759 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.653 4.324 4.408 21.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.031 4.031 3 C -0.207 4.207 4 C -0.068 4.068 5 C -0.230 4.230 6 C -0.186 4.186 7 C 0.330 3.670 8 O -0.342 6.342 9 N -0.337 5.337 10 C -0.037 4.037 11 C -0.163 4.163 12 C -0.151 4.151 13 C -0.159 4.159 14 C 0.047 3.953 15 H 0.078 0.922 16 C 0.068 3.932 17 H 0.055 0.945 18 C -0.217 4.217 19 N -0.337 5.337 20 C -0.311 4.311 21 H 0.078 0.922 22 C -0.279 4.279 23 N -0.634 5.634 24 Si 0.791 3.209 25 H -0.197 1.197 26 H -0.228 1.228 27 H -0.224 1.224 28 N -0.047 5.047 29 O 0.046 5.954 30 H 0.083 0.917 31 H 0.111 0.889 32 H 0.075 0.925 33 H 0.132 0.868 34 H 0.064 0.936 35 H 0.113 0.887 36 H 0.084 0.916 37 H 0.187 0.813 38 H 0.081 0.919 39 H 0.126 0.874 40 H 0.116 0.884 41 H 0.077 0.923 42 H 0.086 0.914 43 H 0.108 0.892 44 H 0.113 0.887 45 H 0.081 0.919 46 H 0.064 0.936 47 H 0.097 0.903 48 H 0.053 0.947 49 H 0.192 0.808 50 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -20.410 3.987 5.177 21.431 hybrid contribution 1.572 -0.153 -1.606 2.252 sum -18.838 3.834 3.571 19.553 Atomic orbital electron populations 1.21879 0.91285 1.02863 1.04144 1.20073 0.98040 0.96302 0.88672 1.21910 1.00907 0.93645 1.04217 1.24962 0.98588 0.95741 0.87530 1.22534 1.03762 1.00438 0.96286 1.23833 1.02456 0.98477 0.93787 1.17485 0.81939 0.84224 0.83353 1.91184 1.36573 1.44169 1.62253 1.47771 1.40916 1.40010 1.05031 1.22415 0.92545 0.94199 0.94543 1.21882 0.97736 0.97847 0.98793 1.21531 0.98060 0.98333 0.97191 1.21906 0.98705 0.97541 0.97718 1.21415 0.91076 0.89017 0.93770 0.92240 1.20603 0.90617 0.90856 0.91094 0.94531 1.22381 1.00502 0.98799 0.99975 1.42435 1.46976 1.14481 1.29837 1.19321 1.12897 0.96891 1.02031 0.92161 1.25270 1.03184 0.96785 1.02672 1.69828 1.40933 1.09113 1.43550 0.85216 0.77962 0.77348 0.80326 1.19661 1.22811 1.22388 1.73953 1.11229 1.03090 1.16387 1.84676 1.54295 1.42392 1.14029 0.91677 0.88913 0.92470 0.86804 0.93633 0.88678 0.91647 0.81267 0.91943 0.87430 0.88390 0.92331 0.91360 0.89178 0.88733 0.91933 0.93642 0.90289 0.94739 0.80776 0.94977 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.78 9.18 71.98 0.66 -1.12 16 2 C -0.01 -0.20 3.34 -11.54 -0.04 -0.23 16 3 C -0.15 -2.28 9.17 71.98 0.66 -1.62 16 4 C 0.00 -0.12 5.98 25.01 0.15 0.03 16 5 C -0.21 -7.10 10.91 22.60 0.25 -6.85 16 6 C -0.03 -1.06 6.88 42.96 0.30 -0.77 16 7 C 0.55 23.82 7.30 86.93 0.63 24.46 16 8 O -0.47 -24.59 10.18 -3.69 -0.04 -24.63 16 9 N -0.60 -21.93 2.98 -798.67 -2.38 -24.31 16 10 C 0.09 2.43 6.14 86.36 0.53 2.96 16 11 C -0.12 -2.61 6.08 30.67 0.19 -2.42 16 12 C -0.11 -2.22 5.89 30.62 0.18 -2.04 16 13 C -0.12 -3.03 4.56 30.53 0.14 -2.89 16 14 C 0.15 5.30 2.54 44.83 0.11 5.41 16 15 H 0.06 2.20 8.14 -2.39 -0.02 2.18 16 16 C 0.18 7.66 1.81 44.99 0.08 7.74 16 17 H 0.04 1.79 6.39 -2.39 -0.02 1.77 16 18 C -0.16 -5.89 8.71 71.98 0.63 -5.27 16 19 N -0.70 -38.29 3.02 -322.94 -0.98 -39.26 16 20 C -0.18 -10.77 8.38 84.03 0.70 -10.06 16 21 H 0.06 3.62 7.75 -2.91 -0.02 3.60 16 22 C -0.09 -5.55 5.50 84.86 0.47 -5.09 16 23 N -0.98 -64.76 13.06 21.65 0.28 -64.47 16 24 Si 0.96 50.44 29.55 68.60 2.03 52.47 16 25 H -0.27 -13.56 7.11 99.48 0.71 -12.85 16 26 H -0.30 -15.81 7.11 99.48 0.71 -15.10 16 27 H -0.30 -15.39 7.11 99.48 0.71 -14.69 16 28 N -0.34 -11.27 8.65 -49.51 -0.43 -11.70 16 29 O 0.12 3.29 11.18 71.91 0.80 4.09 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.09 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 33 H 0.11 1.74 8.12 -2.39 -0.02 1.72 16 34 H 0.04 0.86 8.14 -2.38 -0.02 0.85 16 35 H 0.09 0.96 8.14 -2.38 -0.02 0.94 16 36 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 37 H 0.17 5.91 8.06 -2.91 -0.02 5.88 16 38 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 39 H 0.11 3.20 4.19 -12.43 -0.05 3.15 16 40 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 41 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.29 16 43 H 0.09 1.34 8.14 -2.39 -0.02 1.32 16 44 H 0.09 2.08 6.69 -2.38 -0.02 2.06 16 45 H 0.06 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 47 H 0.08 2.30 6.45 -2.39 -0.02 2.29 16 48 H 0.03 1.42 7.78 -2.39 -0.02 1.40 16 49 H 0.36 21.74 7.55 -92.71 -0.70 21.04 16 50 H 0.24 15.55 8.31 -92.71 -0.77 14.78 16 Total: -1.00 -78.06 387.58 5.13 -72.94 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.20 Total: 32.64 kcal Atomic # 6 Polarization: -3.40 SS G_CDS: 5.64 Total: 2.24 kcal Atomic # 7 Polarization: -136.24 SS G_CDS: -3.50 Total: -139.74 kcal Atomic # 8 Polarization: -21.30 SS G_CDS: 0.77 Total: -20.54 kcal Atomic # 14 Polarization: 50.44 SS G_CDS: 2.03 Total: 52.47 kcal Total: -78.06 5.13 -72.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731294361.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 130.691 kcal (2) G-P(sol) polarization free energy of solvation -78.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.127 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.756 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds