Wall clock time and date at job start Tue Mar 31 2020 19:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.50703 * 109.46897 * 120.00120 * 2 1 3 5 5 C 1.35310 * 126.66412 * 120.28272 * 4 2 1 6 6 C 1.42278 * 103.92017 * 180.08809 * 5 4 2 7 7 C 1.48327 * 126.93660 * 179.91270 * 6 5 4 8 8 O 1.21488 * 120.00285 * 353.31608 * 7 6 5 9 9 N 1.34784 * 119.99601 * 173.31728 * 7 6 5 10 10 C 1.46923 * 120.63178 * 353.68330 * 9 7 6 11 11 C 1.53193 * 108.77374 * 126.37075 * 10 9 7 12 12 C 1.53043 * 109.33873 * 54.62261 * 11 10 9 13 13 C 1.53039 * 109.53755 * 298.68096 * 12 11 10 14 14 C 1.46924 * 120.62782 * 173.66692 * 9 7 6 15 15 H 1.09003 * 109.58808 * 113.84471 * 14 9 7 16 16 C 1.53002 * 109.58984 * 353.41528 * 14 9 7 17 17 H 1.08998 * 109.47015 * 59.04787 * 16 14 9 18 18 C 1.52999 * 109.47372 * 179.04673 * 16 14 9 19 19 N 1.46502 * 109.46694 * 299.04776 * 16 14 9 20 20 C 1.36943 * 119.99518 * 154.99995 * 19 16 14 21 21 H 1.07995 * 119.99975 * 359.97438 * 20 19 16 22 22 C 1.38817 * 119.99459 * 179.97438 * 20 19 16 23 23 N 1.31614 * 120.00372 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99652 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47135 * 59.99978 * 24 22 20 26 26 H 1.48500 * 109.47354 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47308 * 300.00102 * 24 22 20 28 28 N 1.30981 * 106.12139 * 359.64851 * 6 5 4 29 29 O 1.20913 * 111.44215 * 0.22615 * 28 6 5 30 30 H 1.08998 * 109.47242 * 300.00481 * 1 2 3 31 31 H 1.09002 * 109.46915 * 60.00074 * 1 2 3 32 32 H 1.09005 * 109.47367 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46633 * 239.99956 * 2 1 3 34 34 H 1.08997 * 109.46940 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47083 * 299.99823 * 3 2 1 36 36 H 1.08998 * 109.47373 * 59.99599 * 3 2 1 37 37 H 1.08004 * 128.04400 * 359.97202 * 5 4 2 38 38 H 1.09000 * 109.58647 * 6.58564 * 10 9 7 39 39 H 1.09001 * 109.58750 * 246.16206 * 10 9 7 40 40 H 1.09001 * 109.49551 * 174.58683 * 11 10 9 41 41 H 1.08996 * 109.49849 * 294.65378 * 11 10 9 42 42 H 1.08999 * 109.45974 * 58.66915 * 12 11 10 43 43 H 1.08994 * 109.46107 * 178.62954 * 12 11 10 44 44 H 1.09001 * 109.47478 * 301.36746 * 13 12 11 45 45 H 1.08995 * 109.52556 * 181.29605 * 13 12 11 46 46 H 1.09001 * 109.47195 * 65.13120 * 18 16 14 47 47 H 1.08999 * 109.47330 * 185.13408 * 18 16 14 48 48 H 1.09006 * 109.46961 * 305.13568 * 18 16 14 49 49 H 0.96996 * 119.99957 * 334.99421 * 19 16 14 50 50 H 0.97003 * 120.00214 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8176 -1.8118 1.2635 6 6 2.9917 -2.0665 2.6525 7 6 3.7723 -3.1687 3.2656 8 8 4.2456 -4.0409 2.5647 9 7 3.9564 -3.2027 4.6004 10 6 3.5107 -2.0870 5.4461 11 6 2.6118 -2.6390 6.5571 12 6 3.3583 -3.7410 7.3124 13 6 3.6951 -4.8828 6.3506 14 6 4.6062 -4.3563 5.2373 15 1 5.5619 -4.0488 5.6620 16 6 4.8335 -5.4555 4.1976 17 1 5.4578 -5.0698 3.3916 18 6 5.5317 -6.6459 4.8583 19 7 3.5437 -5.8867 3.6529 20 6 3.4806 -6.4480 2.4054 21 1 4.3815 -6.5725 1.8231 22 6 2.2585 -6.8570 1.8895 23 7 1.1604 -6.7048 2.5990 24 14 2.1724 -7.6234 0.1882 25 1 3.0048 -8.8528 0.1564 26 1 0.7637 -7.9717 -0.1272 27 1 2.6804 -6.6555 -0.8170 28 7 2.3283 -1.1278 3.2803 29 8 1.7927 -0.3707 2.5045 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.2177 -2.3693 0.4295 38 1 2.9498 -1.3729 4.8433 39 1 4.3770 -1.5945 5.8878 40 1 2.3523 -1.8364 7.2475 41 1 1.7025 -3.0501 6.1188 42 1 4.2796 -3.3350 7.7300 43 1 2.7297 -4.1184 8.1188 44 1 2.7758 -5.2734 5.9141 45 1 4.2064 -5.6776 6.8936 46 1 4.8695 -7.0882 5.6026 47 1 5.7755 -7.3905 4.1006 48 1 6.4476 -6.3070 5.3426 49 1 2.7345 -5.7745 4.1759 50 1 0.3064 -6.9903 2.2383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731294362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:43 Heat of formation + Delta-G solvation = 75.814790 kcal Electronic energy + Delta-G solvation = -31558.765797 eV Core-core repulsion = 27591.432734 eV Total energy + Delta-G solvation = -3967.333064 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -44.77946 -40.02426 -36.86267 -36.15238 -35.30264 -33.49606 -32.34537 -32.10468 -30.52599 -29.53342 -27.98456 -27.36476 -25.74184 -23.91437 -23.80368 -23.21541 -22.77560 -21.69557 -20.33659 -19.72640 -18.12555 -17.46745 -17.13417 -16.90627 -16.27761 -15.50873 -15.17894 -14.55451 -14.48334 -14.29081 -14.07463 -13.83292 -13.52746 -13.45283 -13.41566 -13.25127 -12.99801 -12.63950 -12.40311 -12.34373 -12.08155 -11.85923 -11.65948 -11.50408 -11.45412 -11.33890 -11.09504 -11.04555 -10.67572 -10.60252 -10.54637 -10.49244 -10.13830 -10.04590 -9.95643 -9.75285 -9.35295 -9.23373 -8.73068 -8.36720 -7.94891 -6.59638 -5.50061 -2.72718 1.45641 2.05918 3.07541 3.35663 3.56643 3.60313 3.62078 3.90109 4.33078 4.43473 4.73715 4.81321 4.87601 4.98998 5.13634 5.17165 5.22716 5.30050 5.37696 5.42172 5.47160 5.56750 5.61998 5.62301 5.68800 5.75968 5.76525 5.81320 5.84508 5.92428 6.01155 6.06690 6.08062 6.16061 6.19448 6.24299 6.25379 6.39124 6.41532 6.48167 6.54844 6.63783 6.91850 7.04330 7.10526 7.42144 7.95615 7.99230 8.33223 8.68192 8.91604 9.79487 10.36580 10.72951 11.74104 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008833 B = 0.005614 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.159779 B = 4986.537308 C = 7228.989645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.010 4.010 3 C -0.149 4.149 4 C -0.033 4.033 5 C -0.176 4.176 6 C 0.006 3.994 7 C 0.581 3.419 8 O -0.440 6.440 9 N -0.600 5.600 10 C 0.083 3.917 11 C -0.130 4.130 12 C -0.117 4.117 13 C -0.132 4.132 14 C 0.148 3.852 15 H 0.064 0.936 16 C 0.166 3.834 17 H 0.084 0.916 18 C -0.168 4.168 19 N -0.708 5.708 20 C -0.180 4.180 21 H 0.065 0.935 22 C -0.028 4.028 23 N -0.946 5.946 24 Si 0.898 3.102 25 H -0.291 1.291 26 H -0.296 1.296 27 H -0.291 1.291 28 N -0.341 5.341 29 O 0.102 5.898 30 H 0.063 0.937 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.103 0.897 34 H 0.060 0.940 35 H 0.066 0.934 36 H 0.063 0.937 37 H 0.177 0.823 38 H 0.121 0.879 39 H 0.055 0.945 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.057 0.943 43 H 0.059 0.941 44 H 0.078 0.922 45 H 0.072 0.928 46 H 0.046 0.954 47 H 0.052 0.948 48 H 0.033 0.967 49 H 0.378 0.622 50 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.974 16.861 2.395 17.288 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.030 4.030 3 C -0.206 4.206 4 C -0.097 4.097 5 C -0.198 4.198 6 C -0.153 4.153 7 C 0.365 3.635 8 O -0.307 6.307 9 N -0.336 5.336 10 C -0.041 4.041 11 C -0.169 4.169 12 C -0.155 4.155 13 C -0.170 4.170 14 C 0.044 3.956 15 H 0.082 0.918 16 C 0.056 3.944 17 H 0.101 0.899 18 C -0.229 4.229 19 N -0.350 5.350 20 C -0.312 4.312 21 H 0.083 0.917 22 C -0.222 4.222 23 N -0.598 5.598 24 Si 0.731 3.269 25 H -0.218 1.218 26 H -0.223 1.223 27 H -0.218 1.218 28 N -0.049 5.049 29 O 0.034 5.966 30 H 0.082 0.918 31 H 0.085 0.915 32 H 0.082 0.918 33 H 0.121 0.879 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.082 0.918 37 H 0.194 0.806 38 H 0.138 0.862 39 H 0.073 0.927 40 H 0.084 0.916 41 H 0.086 0.914 42 H 0.075 0.925 43 H 0.078 0.922 44 H 0.096 0.904 45 H 0.090 0.910 46 H 0.065 0.935 47 H 0.072 0.928 48 H 0.052 0.948 49 H 0.213 0.787 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges 3.099 16.544 3.074 17.111 hybrid contribution -0.363 -0.901 -1.278 1.605 sum 2.736 15.643 1.796 15.982 Atomic orbital electron populations 1.21893 0.93195 1.03078 1.02681 1.19763 0.96739 0.95850 0.90615 1.21881 1.01569 0.94387 1.02765 1.24308 1.00475 0.97792 0.87106 1.22446 1.02422 0.97881 0.97016 1.23900 1.01259 0.97421 0.92727 1.16922 0.81237 0.83076 0.82314 1.90978 1.45492 1.32994 1.61231 1.47630 1.60868 1.19790 1.05296 1.22366 0.98155 0.89827 0.93736 1.21847 0.99298 0.98381 0.97348 1.21525 0.99814 0.96301 0.97863 1.21982 1.01412 0.97462 0.96147 1.21611 0.93936 0.86053 0.93978 0.91798 1.20732 0.91021 0.89776 0.92906 0.89885 1.22572 0.98680 1.01000 1.00622 1.42425 1.02692 1.72614 1.17249 1.19050 0.92678 1.27354 0.92083 0.91688 1.24573 0.95685 1.03864 0.98040 1.69636 0.97497 1.55347 1.37343 0.86364 0.75952 0.79080 0.85489 1.21830 1.22251 1.21797 1.73766 1.11126 1.04077 1.15971 1.84706 1.54995 1.43371 1.13490 0.91821 0.91472 0.91772 0.87897 0.92133 0.91477 0.91832 0.80565 0.86185 0.92682 0.91567 0.91385 0.92473 0.92187 0.90368 0.90975 0.93510 0.92842 0.94846 0.78691 0.94207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.18 37.16 0.34 -1.03 16 2 C -0.01 -0.10 3.34 -91.77 -0.31 -0.41 16 3 C -0.15 -1.14 9.18 37.15 0.34 -0.80 16 4 C -0.03 -0.46 5.98 -35.35 -0.21 -0.67 16 5 C -0.18 -2.93 10.91 -39.07 -0.43 -3.35 16 6 C 0.01 0.12 6.92 -82.53 -0.57 -0.45 16 7 C 0.58 12.17 7.11 -12.11 -0.09 12.08 16 8 O -0.44 -10.58 10.08 5.38 0.05 -10.52 16 9 N -0.60 -10.93 2.96 -166.14 -0.49 -11.42 16 10 C 0.08 1.26 6.33 -3.71 -0.02 1.23 16 11 C -0.13 -1.84 6.08 -26.61 -0.16 -2.01 16 12 C -0.12 -1.59 5.89 -26.69 -0.16 -1.75 16 13 C -0.13 -2.17 4.79 -26.61 -0.13 -2.29 16 14 C 0.15 2.61 2.75 -67.60 -0.19 2.42 16 15 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 16 C 0.17 3.49 1.89 -67.93 -0.13 3.36 16 17 H 0.08 1.92 5.95 -52.02 -0.31 1.61 16 18 C -0.17 -3.17 9.04 37.16 0.34 -2.84 16 19 N -0.71 -18.17 3.41 -53.42 -0.18 -18.35 16 20 C -0.18 -5.18 8.05 -15.05 -0.12 -5.30 16 21 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 22 C -0.03 -0.85 5.50 -17.43 -0.10 -0.95 16 23 N -0.95 -29.77 13.06 55.49 0.72 -29.05 16 24 Si 0.90 23.76 29.55 -169.99 -5.02 18.73 16 25 H -0.29 -7.59 7.11 56.52 0.40 -7.19 16 26 H -0.30 -7.91 7.11 56.52 0.40 -7.50 16 27 H -0.29 -7.60 7.11 56.52 0.40 -7.20 16 28 N -0.34 -5.76 8.57 33.30 0.29 -5.48 16 29 O 0.10 1.51 11.18 17.25 0.19 1.70 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.10 0.89 8.12 -51.93 -0.42 0.47 16 34 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.18 2.86 8.06 -52.48 -0.42 2.43 16 38 H 0.12 1.90 3.81 -70.52 -0.27 1.63 16 39 H 0.05 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 41 H 0.07 1.13 8.14 -51.93 -0.42 0.70 16 42 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 43 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 44 H 0.08 1.57 6.27 -51.93 -0.33 1.24 16 45 H 0.07 1.10 6.91 -51.93 -0.36 0.74 16 46 H 0.05 0.88 6.89 -51.93 -0.36 0.52 16 47 H 0.05 1.08 8.14 -51.93 -0.42 0.66 16 48 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.38 10.44 5.90 -40.82 -0.24 10.20 16 50 H 0.25 7.68 8.31 -40.82 -0.34 7.34 16 LS Contribution 385.09 15.07 5.80 5.80 Total: -1.00 -33.28 385.09 -8.39 -41.68 By element: Atomic # 1 Polarization: 17.81 SS G_CDS: -8.17 Total: 9.64 kcal Atomic # 6 Polarization: -1.15 SS G_CDS: -1.59 Total: -2.74 kcal Atomic # 7 Polarization: -64.63 SS G_CDS: 0.34 Total: -64.29 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.25 Total: -8.82 kcal Atomic # 14 Polarization: 23.76 SS G_CDS: -5.02 Total: 18.73 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.28 -8.39 -41.68 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731294362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.493 kcal (2) G-P(sol) polarization free energy of solvation -33.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.393 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.678 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.815 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds