Wall clock time and date at job start Tue Mar 31 2020 19:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52994 * 109.47286 * 2 1 4 4 C 1.50703 * 109.46897 * 120.00120 * 2 1 3 5 5 C 1.35310 * 126.66412 * 120.28272 * 4 2 1 6 6 C 1.42278 * 103.92017 * 180.08809 * 5 4 2 7 7 C 1.48327 * 126.93660 * 179.91270 * 6 5 4 8 8 O 1.21488 * 120.00285 * 353.31608 * 7 6 5 9 9 N 1.34784 * 119.99601 * 173.31728 * 7 6 5 10 10 C 1.46923 * 120.63178 * 353.68330 * 9 7 6 11 11 C 1.53193 * 108.77374 * 126.37075 * 10 9 7 12 12 C 1.53043 * 109.33873 * 54.62261 * 11 10 9 13 13 C 1.53039 * 109.53755 * 298.68096 * 12 11 10 14 14 C 1.46924 * 120.62782 * 173.66692 * 9 7 6 15 15 H 1.09003 * 109.58808 * 113.84471 * 14 9 7 16 16 C 1.53002 * 109.58984 * 353.41528 * 14 9 7 17 17 H 1.08998 * 109.47015 * 59.04787 * 16 14 9 18 18 C 1.52999 * 109.47372 * 179.04673 * 16 14 9 19 19 N 1.46502 * 109.46694 * 299.04776 * 16 14 9 20 20 C 1.36943 * 119.99518 * 154.99995 * 19 16 14 21 21 H 1.07995 * 119.99975 * 359.97438 * 20 19 16 22 22 C 1.38817 * 119.99459 * 179.97438 * 20 19 16 23 23 N 1.31614 * 120.00372 * 0.02562 * 22 20 19 24 24 Si 1.86796 * 119.99652 * 180.02562 * 22 20 19 25 25 H 1.48508 * 109.47135 * 59.99978 * 24 22 20 26 26 H 1.48500 * 109.47354 * 179.97438 * 24 22 20 27 27 H 1.48502 * 109.47308 * 300.00102 * 24 22 20 28 28 N 1.30981 * 106.12139 * 359.64851 * 6 5 4 29 29 O 1.20913 * 111.44215 * 0.22615 * 28 6 5 30 30 H 1.08998 * 109.47242 * 300.00481 * 1 2 3 31 31 H 1.09002 * 109.46915 * 60.00074 * 1 2 3 32 32 H 1.09005 * 109.47367 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46633 * 239.99956 * 2 1 3 34 34 H 1.08997 * 109.46940 * 180.02562 * 3 2 1 35 35 H 1.09002 * 109.47083 * 299.99823 * 3 2 1 36 36 H 1.08998 * 109.47373 * 59.99599 * 3 2 1 37 37 H 1.08004 * 128.04400 * 359.97202 * 5 4 2 38 38 H 1.09000 * 109.58647 * 6.58564 * 10 9 7 39 39 H 1.09001 * 109.58750 * 246.16206 * 10 9 7 40 40 H 1.09001 * 109.49551 * 174.58683 * 11 10 9 41 41 H 1.08996 * 109.49849 * 294.65378 * 11 10 9 42 42 H 1.08999 * 109.45974 * 58.66915 * 12 11 10 43 43 H 1.08994 * 109.46107 * 178.62954 * 12 11 10 44 44 H 1.09001 * 109.47478 * 301.36746 * 13 12 11 45 45 H 1.08995 * 109.52556 * 181.29605 * 13 12 11 46 46 H 1.09001 * 109.47195 * 65.13120 * 18 16 14 47 47 H 1.08999 * 109.47330 * 185.13408 * 18 16 14 48 48 H 1.09006 * 109.46961 * 305.13568 * 18 16 14 49 49 H 0.96996 * 119.99957 * 334.99421 * 19 16 14 50 50 H 0.97003 * 120.00214 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7105 1.2305 5 6 2.8176 -1.8118 1.2635 6 6 2.9917 -2.0665 2.6525 7 6 3.7723 -3.1687 3.2656 8 8 4.2456 -4.0409 2.5647 9 7 3.9564 -3.2027 4.6004 10 6 3.5107 -2.0870 5.4461 11 6 2.6118 -2.6390 6.5571 12 6 3.3583 -3.7410 7.3124 13 6 3.6951 -4.8828 6.3506 14 6 4.6062 -4.3563 5.2373 15 1 5.5619 -4.0488 5.6620 16 6 4.8335 -5.4555 4.1976 17 1 5.4578 -5.0698 3.3916 18 6 5.5317 -6.6459 4.8583 19 7 3.5437 -5.8867 3.6529 20 6 3.4806 -6.4480 2.4054 21 1 4.3815 -6.5725 1.8231 22 6 2.2585 -6.8570 1.8895 23 7 1.1604 -6.7048 2.5990 24 14 2.1724 -7.6234 0.1882 25 1 3.0048 -8.8528 0.1564 26 1 0.7637 -7.9717 -0.1272 27 1 2.6804 -6.6555 -0.8170 28 7 2.3283 -1.1278 3.2803 29 8 1.7927 -0.3707 2.5045 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8900 36 1 1.6767 1.9563 0.8899 37 1 3.2177 -2.3693 0.4295 38 1 2.9498 -1.3729 4.8433 39 1 4.3770 -1.5945 5.8878 40 1 2.3523 -1.8364 7.2475 41 1 1.7025 -3.0501 6.1188 42 1 4.2796 -3.3350 7.7300 43 1 2.7297 -4.1184 8.1188 44 1 2.7758 -5.2734 5.9141 45 1 4.2064 -5.6776 6.8936 46 1 4.8695 -7.0882 5.6026 47 1 5.7755 -7.3905 4.1006 48 1 6.4476 -6.3070 5.3426 49 1 2.7345 -5.7745 4.1759 50 1 0.3064 -6.9903 2.2383 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731294362.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:42 Heat of formation + Delta-G solvation = 55.972716 kcal Electronic energy + Delta-G solvation = -31559.626214 eV Core-core repulsion = 27591.432734 eV Total energy + Delta-G solvation = -3968.193480 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.09120 -41.52516 -38.33747 -37.09807 -36.92565 -34.98539 -34.03012 -33.65808 -31.77177 -31.21582 -29.69301 -28.02584 -27.16756 -25.84098 -25.14311 -24.53053 -24.13930 -22.90979 -21.69817 -21.16285 -19.53024 -19.05594 -18.77132 -18.34075 -17.60892 -17.04697 -16.39865 -16.18402 -15.85968 -15.73247 -15.51587 -15.41224 -14.96618 -14.78797 -14.63748 -14.40171 -14.15226 -14.09851 -14.02835 -13.56133 -13.35277 -13.07026 -13.01465 -12.91218 -12.77991 -12.66698 -12.39263 -12.34815 -12.19810 -12.18589 -11.94048 -11.82185 -11.76082 -11.57931 -11.42687 -11.33735 -11.14467 -10.83213 -10.42458 -10.01654 -9.47778 -8.68964 -7.79334 -4.99673 0.14851 0.73948 1.41162 1.44590 1.50131 1.82647 2.04361 2.38211 2.64078 2.95402 3.37662 3.54512 3.73313 3.86400 3.92672 4.01618 4.03829 4.05322 4.11725 4.14486 4.23470 4.33018 4.35801 4.39390 4.54512 4.58309 4.76357 4.82592 4.83438 4.85948 4.89781 4.94602 4.97330 4.98743 5.01947 5.07119 5.09802 5.14209 5.23155 5.24567 5.36044 5.39461 5.42609 5.50360 5.56324 5.64509 5.88184 6.42791 6.48001 7.03489 7.36655 7.49671 8.26488 8.50844 9.45371 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.008833 B = 0.005614 C = 0.003872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3169.159779 B = 4986.537308 C = 7228.989645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.011 4.011 3 C -0.144 4.144 4 C -0.006 4.006 5 C -0.206 4.206 6 C -0.026 4.026 7 C 0.571 3.429 8 O -0.489 6.489 9 N -0.598 5.598 10 C 0.077 3.923 11 C -0.126 4.126 12 C -0.110 4.110 13 C -0.125 4.125 14 C 0.148 3.852 15 H 0.097 0.903 16 C 0.160 3.840 17 H 0.061 0.939 18 C -0.157 4.157 19 N -0.710 5.710 20 C -0.164 4.164 21 H 0.056 0.944 22 C -0.092 4.092 23 N -0.981 5.981 24 Si 0.955 3.045 25 H -0.283 1.283 26 H -0.300 1.300 27 H -0.288 1.288 28 N -0.340 5.340 29 O 0.114 5.886 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.092 0.908 36 H 0.064 0.936 37 H 0.172 0.828 38 H 0.114 0.886 39 H 0.084 0.916 40 H 0.099 0.901 41 H 0.033 0.967 42 H 0.086 0.914 43 H 0.073 0.927 44 H 0.034 0.966 45 H 0.087 0.913 46 H 0.046 0.954 47 H 0.031 0.969 48 H 0.072 0.928 49 H 0.366 0.634 50 H 0.240 0.760 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.720 19.125 3.332 19.766 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.031 4.031 3 C -0.201 4.201 4 C -0.069 4.069 5 C -0.229 4.229 6 C -0.184 4.184 7 C 0.356 3.644 8 O -0.360 6.360 9 N -0.333 5.333 10 C -0.045 4.045 11 C -0.165 4.165 12 C -0.147 4.147 13 C -0.164 4.164 14 C 0.045 3.955 15 H 0.115 0.885 16 C 0.052 3.948 17 H 0.079 0.921 18 C -0.217 4.217 19 N -0.351 5.351 20 C -0.297 4.297 21 H 0.074 0.926 22 C -0.282 4.282 23 N -0.636 5.636 24 Si 0.787 3.213 25 H -0.210 1.210 26 H -0.226 1.226 27 H -0.215 1.215 28 N -0.046 5.046 29 O 0.045 5.955 30 H 0.083 0.917 31 H 0.114 0.886 32 H 0.062 0.938 33 H 0.133 0.867 34 H 0.077 0.923 35 H 0.111 0.889 36 H 0.083 0.917 37 H 0.189 0.811 38 H 0.131 0.869 39 H 0.103 0.897 40 H 0.117 0.883 41 H 0.052 0.948 42 H 0.105 0.895 43 H 0.092 0.908 44 H 0.052 0.948 45 H 0.105 0.895 46 H 0.065 0.935 47 H 0.051 0.949 48 H 0.091 0.909 49 H 0.199 0.801 50 H 0.049 0.951 Dipole moment (debyes) X Y Z Total from point charges 3.901 18.825 4.069 19.651 hybrid contribution -0.540 -1.468 -1.550 2.202 sum 3.361 17.357 2.519 17.858 Atomic orbital electron populations 1.21910 0.92413 1.02199 1.04208 1.20074 0.97260 0.97038 0.88698 1.21875 1.01458 0.92661 1.04118 1.24970 0.98060 0.96388 0.87507 1.22549 1.04483 0.99575 0.96309 1.23852 1.02685 0.98069 0.93828 1.17332 0.80896 0.83107 0.83086 1.90936 1.47691 1.34965 1.62427 1.47797 1.60070 1.20567 1.04870 1.22590 0.99472 0.88872 0.93553 1.21832 0.97650 0.99528 0.97441 1.21505 1.01301 0.94753 0.97140 1.21912 0.99154 0.99092 0.96233 1.21657 0.95750 0.84950 0.93134 0.88493 1.20837 0.88774 0.91690 0.93491 0.92084 1.22393 1.00074 0.99321 0.99955 1.42498 1.04040 1.72312 1.16202 1.19211 0.92088 1.25384 0.92987 0.92605 1.25213 0.95576 1.05932 1.01458 1.69800 0.97556 1.57507 1.38778 0.85427 0.75570 0.78438 0.81826 1.21032 1.22614 1.21477 1.73774 1.10838 1.03767 1.16257 1.84678 1.54147 1.42643 1.14064 0.91713 0.88609 0.93826 0.86725 0.92331 0.88912 0.91733 0.81065 0.86879 0.89737 0.88301 0.94825 0.89520 0.90802 0.94763 0.89477 0.93510 0.94938 0.90897 0.80058 0.95120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 9.18 71.98 0.66 -1.79 16 2 C -0.01 -0.20 3.34 -11.54 -0.04 -0.24 16 3 C -0.14 -1.82 9.18 71.98 0.66 -1.16 16 4 C -0.01 -0.15 5.98 25.01 0.15 0.00 16 5 C -0.21 -7.16 10.91 22.60 0.25 -6.91 16 6 C -0.03 -1.03 6.92 42.96 0.30 -0.73 16 7 C 0.57 24.88 7.11 86.93 0.62 25.49 16 8 O -0.49 -24.80 10.08 -3.68 -0.04 -24.84 16 9 N -0.60 -21.78 2.96 -797.85 -2.36 -24.14 16 10 C 0.08 2.23 6.33 86.36 0.55 2.78 16 11 C -0.13 -3.33 6.08 30.67 0.19 -3.14 16 12 C -0.11 -2.64 5.89 30.62 0.18 -2.46 16 13 C -0.13 -3.98 4.79 30.67 0.15 -3.84 16 14 C 0.15 5.09 2.75 44.98 0.12 5.21 16 15 H 0.10 2.74 8.14 -2.39 -0.02 2.72 16 16 C 0.16 6.86 1.89 44.99 0.08 6.95 16 17 H 0.06 2.92 5.95 -3.76 -0.02 2.90 16 18 C -0.16 -5.82 9.04 71.98 0.65 -5.17 16 19 N -0.71 -37.94 3.41 -322.93 -1.10 -39.04 16 20 C -0.16 -9.81 8.05 84.03 0.68 -9.14 16 21 H 0.06 3.39 7.83 -2.91 -0.02 3.37 16 22 C -0.09 -5.73 5.50 84.86 0.47 -5.26 16 23 N -0.98 -64.35 13.06 21.65 0.28 -64.07 16 24 Si 0.96 50.56 29.55 68.60 2.03 52.59 16 25 H -0.28 -14.48 7.11 99.48 0.71 -13.77 16 26 H -0.30 -15.88 7.11 99.48 0.71 -15.17 16 27 H -0.29 -14.88 7.11 99.48 0.71 -14.18 16 28 N -0.34 -11.58 8.57 -49.51 -0.42 -12.00 16 29 O 0.11 3.34 11.18 71.90 0.80 4.14 16 30 H 0.06 1.04 8.14 -2.39 -0.02 1.03 16 31 H 0.10 1.04 8.14 -2.39 -0.02 1.02 16 32 H 0.04 0.89 8.14 -2.38 -0.02 0.87 16 33 H 0.11 1.80 8.12 -2.39 -0.02 1.78 16 34 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 35 H 0.09 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 37 H 0.17 5.95 8.06 -2.91 -0.02 5.93 16 38 H 0.11 3.50 3.81 -39.09 -0.15 3.35 16 39 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 40 H 0.10 1.98 8.14 -2.39 -0.02 1.96 16 41 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 42 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 43 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 44 H 0.03 1.40 6.27 -2.39 -0.01 1.38 16 45 H 0.09 2.48 6.91 -2.39 -0.02 2.46 16 46 H 0.05 1.72 6.89 -2.39 -0.02 1.70 16 47 H 0.03 1.31 8.14 -2.39 -0.02 1.29 16 48 H 0.07 2.11 8.14 -2.38 -0.02 2.09 16 49 H 0.37 21.23 5.90 -92.71 -0.55 20.69 16 50 H 0.24 15.49 8.31 -92.71 -0.77 14.72 16 Total: -1.00 -77.15 385.09 5.09 -72.06 By element: Atomic # 1 Polarization: 34.47 SS G_CDS: 0.25 Total: 34.71 kcal Atomic # 6 Polarization: -5.07 SS G_CDS: 5.66 Total: 0.59 kcal Atomic # 7 Polarization: -135.65 SS G_CDS: -3.61 Total: -139.26 kcal Atomic # 8 Polarization: -21.46 SS G_CDS: 0.77 Total: -20.70 kcal Atomic # 14 Polarization: 50.56 SS G_CDS: 2.03 Total: 52.59 kcal Total: -77.15 5.09 -72.06 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731294362.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 128.029 kcal (2) G-P(sol) polarization free energy of solvation -77.147 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.882 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.057 kcal (6) G-S(sol) free energy of system = (1) + (5) 55.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds