Wall clock time and date at job start Tue Mar 31 2020 19:29:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 C 1.50695 * 109.47488 * 120.00447 * 2 1 3 5 5 C 1.35314 * 126.66863 * 119.99861 * 4 2 1 6 6 C 1.42268 * 103.92070 * 180.26271 * 5 4 2 7 7 C 1.48337 * 126.93619 * 179.73868 * 6 5 4 8 8 O 1.21492 * 120.00059 * 354.61572 * 7 6 5 9 9 N 1.34772 * 120.00091 * 174.61577 * 7 6 5 10 10 C 1.46932 * 120.62795 * 4.66462 * 9 7 6 11 11 C 1.53192 * 108.77416 * 233.58239 * 10 9 7 12 12 C 1.53048 * 109.31392 * 305.36607 * 11 10 9 13 13 C 1.53044 * 109.53652 * 61.36411 * 12 11 10 14 14 C 1.46927 * 120.63288 * 184.37858 * 9 7 6 15 15 H 1.08996 * 109.58798 * 246.20572 * 14 9 7 16 16 C 1.53002 * 109.58298 * 6.63329 * 14 9 7 17 17 H 1.08996 * 109.47436 * 47.50132 * 16 14 9 18 18 C 1.53002 * 109.46900 * 167.49818 * 16 14 9 19 19 N 1.46500 * 109.46825 * 287.49235 * 16 14 9 20 20 C 1.36941 * 119.99544 * 165.62019 * 19 16 14 21 21 H 1.07993 * 120.00142 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99789 * 180.02562 * 20 19 16 23 23 N 1.31616 * 119.99895 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99970 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47032 * 89.99999 * 24 22 20 26 26 H 1.48495 * 109.46859 * 210.00266 * 24 22 20 27 27 H 1.48503 * 109.47072 * 329.99964 * 24 22 20 28 28 N 1.30980 * 106.12608 * 359.57805 * 6 5 4 29 29 O 1.20903 * 111.43856 * 0.45260 * 28 6 5 30 30 H 1.08999 * 109.47359 * 59.99670 * 1 2 3 31 31 H 1.09005 * 109.47024 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47378 * 299.99504 * 1 2 3 33 33 H 1.09009 * 109.47061 * 240.00664 * 2 1 3 34 34 H 1.08996 * 109.46815 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47214 * 300.00419 * 3 2 1 36 36 H 1.08996 * 109.46529 * 59.99976 * 3 2 1 37 37 H 1.08005 * 128.03838 * 0.02562 * 5 4 2 38 38 H 1.08993 * 109.58650 * 353.36865 * 10 9 7 39 39 H 1.09001 * 109.58781 * 113.65442 * 10 9 7 40 40 H 1.08996 * 109.49793 * 65.31257 * 11 10 9 41 41 H 1.08999 * 109.49999 * 185.41293 * 11 10 9 42 42 H 1.08997 * 109.45831 * 181.38523 * 12 11 10 43 43 H 1.09004 * 109.45558 * 301.34481 * 12 11 10 44 44 H 1.09002 * 109.49686 * 58.58806 * 13 12 11 45 45 H 1.09001 * 109.49251 * 178.65099 * 13 12 11 46 46 H 1.08999 * 109.47348 * 179.97438 * 18 16 14 47 47 H 1.09003 * 109.46820 * 299.99978 * 18 16 14 48 48 H 1.09001 * 109.47223 * 59.99702 * 18 16 14 49 49 H 0.97001 * 120.00085 * 345.62870 * 19 16 14 50 50 H 0.97003 * 119.99499 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 2.8134 -1.8150 1.2634 6 6 2.9863 -2.0705 2.6522 7 6 3.7596 -3.1780 3.2653 8 8 4.2466 -4.0408 2.5622 9 7 3.9219 -3.2271 4.6023 10 6 3.2549 -2.2500 5.4737 11 6 4.3072 -1.5899 6.3703 12 6 5.0846 -2.6738 7.1208 13 6 5.8039 -3.5765 6.1157 14 6 4.7640 -4.2625 5.2167 15 1 4.1441 -4.9306 5.8144 16 6 5.4759 -5.0605 4.1224 17 1 5.9182 -4.3734 3.4011 18 6 6.5762 -5.9182 4.7507 19 7 4.5096 -5.9268 3.4428 20 6 4.8363 -6.5122 2.2488 21 1 5.8060 -6.3349 1.8079 22 6 3.9205 -7.3327 1.6045 23 7 4.2343 -7.8950 0.4566 24 14 2.2422 -7.6377 2.3661 25 1 1.2855 -6.6097 1.8836 26 1 1.7589 -8.9862 1.9750 27 1 2.3483 -7.5597 3.8453 28 7 2.3278 -1.1283 3.2802 29 8 1.7923 -0.3712 2.5045 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4424 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.2098 -2.3749 0.4292 38 1 2.7661 -1.4903 4.8639 39 1 2.5126 -2.7569 6.0902 40 1 4.9948 -1.0081 5.7566 41 1 3.8142 -0.9334 7.0873 42 1 5.8175 -2.2059 7.7780 43 1 4.3930 -3.2710 7.7151 44 1 6.4774 -2.9759 5.5043 45 1 6.3765 -4.3335 6.6516 46 1 7.0831 -6.4870 3.9712 47 1 7.2951 -5.2735 5.2564 48 1 6.1339 -6.6052 5.4721 49 1 3.6384 -6.0857 3.8386 50 1 3.5944 -8.4686 0.0067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001731294363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:46 Heat of formation + Delta-G solvation = 84.404523 kcal Electronic energy + Delta-G solvation = -31244.837338 eV Core-core repulsion = 27277.876754 eV Total energy + Delta-G solvation = -3966.960585 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -44.93930 -40.19151 -37.04948 -36.26381 -35.55460 -33.67921 -32.57369 -32.19511 -30.68586 -30.16008 -28.13878 -27.46123 -25.93718 -24.27490 -23.84592 -23.25396 -22.36389 -21.84125 -20.36410 -19.98003 -18.70339 -17.63280 -17.29870 -17.13294 -16.40416 -15.69347 -15.24680 -14.95134 -14.62969 -14.43973 -14.13886 -13.90457 -13.64475 -13.60794 -13.50238 -13.34006 -13.05265 -12.69217 -12.61597 -12.49348 -12.33596 -12.19802 -11.89747 -11.62798 -11.55741 -11.43641 -11.39542 -11.20715 -10.88717 -10.77530 -10.71377 -10.61984 -10.20358 -10.14031 -10.09730 -9.81212 -9.40086 -9.34713 -8.74927 -8.64066 -8.13359 -6.81488 -5.50900 -2.77851 1.28470 1.89635 2.91672 3.19580 3.49038 3.53220 3.56515 3.69681 4.14002 4.30917 4.63086 4.77630 4.77734 4.81033 4.88317 4.96541 5.02971 5.13343 5.14831 5.23198 5.33432 5.41265 5.45723 5.52087 5.54568 5.60078 5.63205 5.68573 5.71778 5.78756 5.84868 5.92024 5.94088 5.96969 6.01989 6.02619 6.07656 6.09406 6.21264 6.30096 6.38872 6.40260 6.56924 6.86060 6.98231 7.26334 7.75560 8.16867 8.23660 8.65989 8.73824 9.46133 10.19542 10.40085 11.69497 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.005239 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.309313 B = 5343.496973 C = 7586.297998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.012 4.012 3 C -0.149 4.149 4 C -0.031 4.031 5 C -0.178 4.178 6 C 0.000 4.000 7 C 0.545 3.455 8 O -0.412 6.412 9 N -0.603 5.603 10 C 0.078 3.922 11 C -0.129 4.129 12 C -0.120 4.120 13 C -0.127 4.127 14 C 0.144 3.856 15 H 0.067 0.933 16 C 0.186 3.814 17 H 0.066 0.934 18 C -0.168 4.168 19 N -0.719 5.719 20 C -0.187 4.187 21 H 0.086 0.914 22 C -0.006 4.006 23 N -0.947 5.947 24 Si 0.878 3.122 25 H -0.292 1.292 26 H -0.296 1.296 27 H -0.283 1.283 28 N -0.344 5.344 29 O 0.101 5.899 30 H 0.068 0.932 31 H 0.062 0.938 32 H 0.062 0.938 33 H 0.105 0.895 34 H 0.061 0.939 35 H 0.067 0.933 36 H 0.062 0.938 37 H 0.181 0.819 38 H 0.125 0.875 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.068 0.932 42 H 0.061 0.939 43 H 0.061 0.939 44 H 0.067 0.933 45 H 0.078 0.922 46 H 0.061 0.939 47 H 0.041 0.959 48 H 0.044 0.956 49 H 0.354 0.646 50 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.733 20.553 7.237 22.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.031 4.031 3 C -0.207 4.207 4 C -0.094 4.094 5 C -0.200 4.200 6 C -0.159 4.159 7 C 0.327 3.673 8 O -0.277 6.277 9 N -0.341 5.341 10 C -0.045 4.045 11 C -0.168 4.168 12 C -0.158 4.158 13 C -0.165 4.165 14 C 0.041 3.959 15 H 0.085 0.915 16 C 0.076 3.924 17 H 0.083 0.917 18 C -0.228 4.228 19 N -0.361 5.361 20 C -0.317 4.317 21 H 0.104 0.896 22 C -0.199 4.199 23 N -0.598 5.598 24 Si 0.710 3.290 25 H -0.219 1.219 26 H -0.223 1.223 27 H -0.210 1.210 28 N -0.053 5.053 29 O 0.034 5.966 30 H 0.087 0.913 31 H 0.081 0.919 32 H 0.081 0.919 33 H 0.123 0.877 34 H 0.080 0.920 35 H 0.086 0.914 36 H 0.081 0.919 37 H 0.198 0.802 38 H 0.142 0.858 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.080 0.920 44 H 0.086 0.914 45 H 0.097 0.903 46 H 0.080 0.920 47 H 0.060 0.940 48 H 0.063 0.937 49 H 0.186 0.814 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -3.516 20.229 7.877 21.991 hybrid contribution -1.221 -0.675 -0.047 1.396 sum -4.737 19.554 7.830 21.590 Atomic orbital electron populations 1.21889 0.93210 1.02910 1.02789 1.19795 0.96682 0.96015 0.90602 1.21883 1.01706 0.94258 1.02806 1.24369 1.00421 0.97549 0.87052 1.22538 1.02343 0.98088 0.97060 1.24022 1.01375 0.97605 0.92876 1.17352 0.82919 0.84113 0.82945 1.91427 1.43615 1.31731 1.60896 1.47736 1.49686 1.31753 1.04887 1.22453 0.94693 0.93089 0.94271 1.21863 0.98397 0.97890 0.98630 1.21549 0.99253 0.97251 0.97703 1.22084 0.97852 0.99177 0.97432 1.21699 0.91192 0.88101 0.94907 0.91500 1.20381 0.90034 0.91194 0.90750 0.91664 1.22521 0.99200 1.00240 1.00830 1.42679 1.14247 1.55411 1.23758 1.18885 1.00243 1.17865 0.94745 0.89607 1.24488 0.97187 1.01231 0.97034 1.69684 1.35281 1.37752 1.17069 0.86632 0.87026 0.76903 0.78436 1.21896 1.22271 1.21019 1.73733 1.11593 1.03940 1.16008 1.84706 1.54829 1.43486 1.13552 0.91332 0.91928 0.91858 0.87683 0.92027 0.91358 0.91869 0.80194 0.85795 0.92354 0.91852 0.91290 0.91993 0.92009 0.91440 0.90315 0.92037 0.94009 0.93675 0.81385 0.93693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 9.18 37.15 0.34 -0.82 16 2 C -0.01 -0.10 3.34 -91.78 -0.31 -0.41 16 3 C -0.15 -1.04 9.18 37.16 0.34 -0.70 16 4 C -0.03 -0.38 5.98 -35.35 -0.21 -0.59 16 5 C -0.18 -2.74 10.91 -39.08 -0.43 -3.17 16 6 C 0.00 0.01 6.95 -82.53 -0.57 -0.57 16 7 C 0.54 10.72 7.46 -12.11 -0.09 10.63 16 8 O -0.41 -9.78 9.87 5.37 0.05 -9.72 16 9 N -0.60 -10.23 2.97 -165.88 -0.49 -10.72 16 10 C 0.08 1.08 6.33 -3.71 -0.02 1.06 16 11 C -0.13 -1.46 6.08 -26.61 -0.16 -1.62 16 12 C -0.12 -1.30 5.88 -26.68 -0.16 -1.46 16 13 C -0.13 -1.64 4.46 -26.38 -0.12 -1.76 16 14 C 0.14 2.40 2.62 -67.37 -0.18 2.23 16 15 H 0.07 1.14 8.12 -51.93 -0.42 0.72 16 16 C 0.19 3.78 1.83 -67.93 -0.12 3.65 16 17 H 0.07 1.47 6.39 -51.93 -0.33 1.14 16 18 C -0.17 -3.06 8.67 37.16 0.32 -2.73 16 19 N -0.72 -17.93 3.00 -53.43 -0.16 -18.09 16 20 C -0.19 -5.49 8.71 -15.06 -0.13 -5.62 16 21 H 0.09 2.73 8.06 -52.49 -0.42 2.31 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.95 -31.16 13.97 55.49 0.78 -30.39 16 24 Si 0.88 23.93 27.74 -169.99 -4.71 19.21 16 25 H -0.29 -8.05 7.11 56.52 0.40 -7.65 16 26 H -0.30 -8.12 7.11 56.52 0.40 -7.72 16 27 H -0.28 -7.35 6.52 56.52 0.37 -6.99 16 28 N -0.34 -5.21 8.50 33.29 0.28 -4.93 16 29 O 0.10 1.34 11.18 17.24 0.19 1.53 16 30 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 31 H 0.06 0.55 8.14 -51.93 -0.42 0.12 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.11 0.82 8.12 -51.92 -0.42 0.40 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.07 0.36 8.14 -51.93 -0.42 -0.06 16 36 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.18 2.77 8.06 -52.48 -0.42 2.35 16 38 H 0.13 1.77 3.75 -74.73 -0.28 1.49 16 39 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 44 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 45 H 0.08 0.94 6.71 -51.93 -0.35 0.59 16 46 H 0.06 1.25 8.01 -51.93 -0.42 0.84 16 47 H 0.04 0.62 6.45 -51.93 -0.33 0.29 16 48 H 0.04 0.80 8.14 -51.93 -0.42 0.37 16 49 H 0.35 9.01 5.56 -40.82 -0.23 8.79 16 50 H 0.25 8.01 8.31 -40.82 -0.34 7.67 16 LS Contribution 384.40 15.07 5.79 5.79 Total: -1.00 -34.78 384.40 -8.15 -42.94 By element: Atomic # 1 Polarization: 14.83 SS G_CDS: -8.29 Total: 6.54 kcal Atomic # 6 Polarization: -0.58 SS G_CDS: -1.59 Total: -2.17 kcal Atomic # 7 Polarization: -64.53 SS G_CDS: 0.41 Total: -64.12 kcal Atomic # 8 Polarization: -8.44 SS G_CDS: 0.25 Total: -8.19 kcal Atomic # 14 Polarization: 23.93 SS G_CDS: -4.71 Total: 19.21 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -34.78 -8.15 -42.94 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731294363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.344 kcal (2) G-P(sol) polarization free energy of solvation -34.785 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 92.559 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.939 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds