Wall clock time and date at job start Tue Mar 31 2020 19:29:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.53004 * 109.47241 * 2 1 4 4 C 1.50695 * 109.47488 * 120.00447 * 2 1 3 5 5 C 1.35314 * 126.66863 * 119.99861 * 4 2 1 6 6 C 1.42268 * 103.92070 * 180.26271 * 5 4 2 7 7 C 1.48337 * 126.93619 * 179.73868 * 6 5 4 8 8 O 1.21492 * 120.00059 * 354.61572 * 7 6 5 9 9 N 1.34772 * 120.00091 * 174.61577 * 7 6 5 10 10 C 1.46932 * 120.62795 * 4.66462 * 9 7 6 11 11 C 1.53192 * 108.77416 * 233.58239 * 10 9 7 12 12 C 1.53048 * 109.31392 * 305.36607 * 11 10 9 13 13 C 1.53044 * 109.53652 * 61.36411 * 12 11 10 14 14 C 1.46927 * 120.63288 * 184.37858 * 9 7 6 15 15 H 1.08996 * 109.58798 * 246.20572 * 14 9 7 16 16 C 1.53002 * 109.58298 * 6.63329 * 14 9 7 17 17 H 1.08996 * 109.47436 * 47.50132 * 16 14 9 18 18 C 1.53002 * 109.46900 * 167.49818 * 16 14 9 19 19 N 1.46500 * 109.46825 * 287.49235 * 16 14 9 20 20 C 1.36941 * 119.99544 * 165.62019 * 19 16 14 21 21 H 1.07993 * 120.00142 * 359.97438 * 20 19 16 22 22 C 1.38813 * 119.99789 * 180.02562 * 20 19 16 23 23 N 1.31616 * 119.99895 * 179.97438 * 22 20 19 24 24 Si 1.86809 * 119.99970 * 0.02562 * 22 20 19 25 25 H 1.48496 * 109.47032 * 89.99999 * 24 22 20 26 26 H 1.48495 * 109.46859 * 210.00266 * 24 22 20 27 27 H 1.48503 * 109.47072 * 329.99964 * 24 22 20 28 28 N 1.30980 * 106.12608 * 359.57805 * 6 5 4 29 29 O 1.20903 * 111.43856 * 0.45260 * 28 6 5 30 30 H 1.08999 * 109.47359 * 59.99670 * 1 2 3 31 31 H 1.09005 * 109.47024 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47378 * 299.99504 * 1 2 3 33 33 H 1.09009 * 109.47061 * 240.00664 * 2 1 3 34 34 H 1.08996 * 109.46815 * 179.97438 * 3 2 1 35 35 H 1.08999 * 109.47214 * 300.00419 * 3 2 1 36 36 H 1.08996 * 109.46529 * 59.99976 * 3 2 1 37 37 H 1.08005 * 128.03838 * 0.02562 * 5 4 2 38 38 H 1.08993 * 109.58650 * 353.36865 * 10 9 7 39 39 H 1.09001 * 109.58781 * 113.65442 * 10 9 7 40 40 H 1.08996 * 109.49793 * 65.31257 * 11 10 9 41 41 H 1.08999 * 109.49999 * 185.41293 * 11 10 9 42 42 H 1.08997 * 109.45831 * 181.38523 * 12 11 10 43 43 H 1.09004 * 109.45558 * 301.34481 * 12 11 10 44 44 H 1.09002 * 109.49686 * 58.58806 * 13 12 11 45 45 H 1.09001 * 109.49251 * 178.65099 * 13 12 11 46 46 H 1.08999 * 109.47348 * 179.97438 * 18 16 14 47 47 H 1.09003 * 109.46820 * 299.99978 * 18 16 14 48 48 H 1.09001 * 109.47223 * 59.99702 * 18 16 14 49 49 H 0.97001 * 120.00085 * 345.62870 * 19 16 14 50 50 H 0.97003 * 119.99499 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7105 1.2303 5 6 2.8134 -1.8150 1.2634 6 6 2.9863 -2.0705 2.6522 7 6 3.7596 -3.1780 3.2653 8 8 4.2466 -4.0408 2.5622 9 7 3.9219 -3.2271 4.6023 10 6 3.2549 -2.2500 5.4737 11 6 4.3072 -1.5899 6.3703 12 6 5.0846 -2.6738 7.1208 13 6 5.8039 -3.5765 6.1157 14 6 4.7640 -4.2625 5.2167 15 1 4.1441 -4.9306 5.8144 16 6 5.4759 -5.0605 4.1224 17 1 5.9182 -4.3734 3.4011 18 6 6.5762 -5.9182 4.7507 19 7 4.5096 -5.9268 3.4428 20 6 4.8363 -6.5122 2.2488 21 1 5.8060 -6.3349 1.8079 22 6 3.9205 -7.3327 1.6045 23 7 4.2343 -7.8950 0.4566 24 14 2.2422 -7.6377 2.3661 25 1 1.2855 -6.6097 1.8836 26 1 1.7589 -8.9862 1.9750 27 1 2.3483 -7.5597 3.8453 28 7 2.3278 -1.1283 3.2802 29 8 1.7923 -0.3712 2.5045 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5137 0.8900 33 1 1.8933 -0.5138 -0.8901 34 1 3.1299 1.4424 0.0005 35 1 1.6766 1.9564 -0.8899 36 1 1.6766 1.9563 0.8900 37 1 3.2098 -2.3749 0.4292 38 1 2.7661 -1.4903 4.8639 39 1 2.5126 -2.7569 6.0902 40 1 4.9948 -1.0081 5.7566 41 1 3.8142 -0.9334 7.0873 42 1 5.8175 -2.2059 7.7780 43 1 4.3930 -3.2710 7.7151 44 1 6.4774 -2.9759 5.5043 45 1 6.3765 -4.3335 6.6516 46 1 7.0831 -6.4870 3.9712 47 1 7.2951 -5.2735 5.2564 48 1 6.1339 -6.6052 5.4721 49 1 3.6384 -6.0857 3.8386 50 1 3.5944 -8.4686 0.0067 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001731294363.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:29:45 Heat of formation + Delta-G solvation = 62.661742 kcal Electronic energy + Delta-G solvation = -31245.780176 eV Core-core repulsion = 27277.876754 eV Total energy + Delta-G solvation = -3967.903422 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -46.14944 -41.60577 -38.40049 -37.27216 -37.01284 -35.08676 -34.11569 -33.73186 -32.10071 -31.65397 -29.66904 -28.03682 -27.29646 -25.92243 -25.07107 -24.34820 -23.92337 -22.94635 -21.72058 -21.31227 -20.20578 -19.10807 -18.82901 -18.38002 -17.64544 -17.06592 -16.72306 -16.15162 -16.06802 -15.79555 -15.56378 -15.17213 -14.90307 -14.76940 -14.74121 -14.46437 -14.34940 -14.13797 -14.04769 -13.91109 -13.76648 -13.21998 -13.02275 -12.98872 -12.94930 -12.68032 -12.41899 -12.33850 -12.19851 -12.04115 -11.93229 -11.82542 -11.77204 -11.71721 -11.52351 -11.38021 -11.12198 -10.86422 -10.49065 -10.28718 -9.60217 -8.91904 -7.89353 -5.11912 0.06994 0.67202 1.27325 1.32271 1.38100 1.74892 1.98366 2.23041 2.52911 2.85279 3.32319 3.42262 3.58747 3.65198 3.82658 3.96120 3.99996 4.01755 4.05507 4.12967 4.18715 4.25624 4.30289 4.34760 4.50496 4.53113 4.67458 4.77481 4.81950 4.82856 4.86394 4.92138 4.94424 4.96278 4.99544 5.01345 5.08889 5.12547 5.13308 5.22813 5.34010 5.35561 5.37755 5.44201 5.48003 5.79332 5.87683 6.32728 6.36638 6.96710 7.19656 7.28948 7.97820 8.16460 9.35074 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009020 B = 0.005239 C = 0.003690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3103.309313 B = 5343.496973 C = 7586.297998 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.013 4.013 3 C -0.146 4.146 4 C 0.000 4.000 5 C -0.210 4.210 6 C -0.028 4.028 7 C 0.542 3.458 8 O -0.473 6.473 9 N -0.600 5.600 10 C 0.072 3.928 11 C -0.123 4.123 12 C -0.114 4.114 13 C -0.120 4.120 14 C 0.145 3.855 15 H 0.070 0.930 16 C 0.182 3.818 17 H 0.037 0.963 18 C -0.158 4.158 19 N -0.719 5.719 20 C -0.154 4.154 21 H 0.046 0.954 22 C -0.078 4.078 23 N -0.997 5.997 24 Si 0.944 3.056 25 H -0.298 1.298 26 H -0.297 1.297 27 H -0.261 1.261 28 N -0.337 5.337 29 O 0.117 5.883 30 H 0.093 0.907 31 H 0.047 0.953 32 H 0.066 0.934 33 H 0.113 0.887 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.065 0.935 37 H 0.169 0.831 38 H 0.121 0.879 39 H 0.068 0.932 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.088 0.912 43 H 0.071 0.929 44 H 0.061 0.939 45 H 0.096 0.904 46 H 0.029 0.971 47 H 0.080 0.920 48 H 0.054 0.946 49 H 0.352 0.648 50 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.072 23.364 10.143 25.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.033 4.033 3 C -0.203 4.203 4 C -0.064 4.064 5 C -0.233 4.233 6 C -0.186 4.186 7 C 0.325 3.675 8 O -0.342 6.342 9 N -0.336 5.336 10 C -0.050 4.050 11 C -0.161 4.161 12 C -0.152 4.152 13 C -0.159 4.159 14 C 0.042 3.958 15 H 0.088 0.912 16 C 0.075 3.925 17 H 0.055 0.945 18 C -0.217 4.217 19 N -0.361 5.361 20 C -0.286 4.286 21 H 0.064 0.936 22 C -0.267 4.267 23 N -0.653 5.653 24 Si 0.775 3.225 25 H -0.226 1.226 26 H -0.224 1.224 27 H -0.186 1.186 28 N -0.043 5.043 29 O 0.047 5.953 30 H 0.112 0.888 31 H 0.067 0.933 32 H 0.085 0.915 33 H 0.131 0.869 34 H 0.074 0.926 35 H 0.110 0.890 36 H 0.084 0.916 37 H 0.187 0.813 38 H 0.137 0.863 39 H 0.086 0.914 40 H 0.074 0.926 41 H 0.115 0.885 42 H 0.106 0.894 43 H 0.089 0.911 44 H 0.080 0.920 45 H 0.114 0.886 46 H 0.048 0.952 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.184 0.816 50 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -4.836 23.089 10.905 25.988 hybrid contribution -0.768 -1.323 -0.966 1.809 sum -5.603 21.766 9.939 24.575 Atomic orbital electron populations 1.21903 0.91996 1.02446 1.04257 1.20090 0.97569 0.96893 0.88712 1.21885 1.01337 0.92872 1.04187 1.24942 0.97971 0.96001 0.87458 1.22568 1.04463 0.99857 0.96366 1.23834 1.02890 0.98149 0.93734 1.17743 0.82173 0.83965 0.83589 1.91390 1.46225 1.34335 1.62281 1.47922 1.49113 1.32064 1.04472 1.22692 0.95701 0.92462 0.94180 1.21845 0.97615 0.98156 0.98519 1.21544 0.99761 0.96695 0.97165 1.22065 0.96820 0.99779 0.97198 1.21704 0.92016 0.88237 0.93809 0.91168 1.20488 0.90054 0.90795 0.91198 0.94532 1.22378 0.98975 1.00316 1.00072 1.42628 1.15030 1.55859 1.22538 1.18726 0.98177 1.16097 0.95620 0.93573 1.25152 1.01143 1.02411 0.97946 1.69864 1.36629 1.39642 1.19116 0.85529 0.82050 0.76096 0.78783 1.22629 1.22383 1.18579 1.73743 1.11066 1.03340 1.16119 1.84689 1.53909 1.42685 1.13980 0.88834 0.93347 0.91497 0.86874 0.92645 0.88966 0.91554 0.81334 0.86255 0.91382 0.92612 0.88502 0.89387 0.91076 0.92033 0.88563 0.95209 0.90125 0.92704 0.81578 0.94202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.94 9.18 71.98 0.66 -1.28 16 2 C -0.01 -0.21 3.34 -11.54 -0.04 -0.24 16 3 C -0.15 -1.66 9.18 71.98 0.66 -1.00 16 4 C 0.00 0.00 5.98 25.01 0.15 0.15 16 5 C -0.21 -6.71 10.91 22.60 0.25 -6.46 16 6 C -0.03 -0.99 6.95 42.96 0.30 -0.69 16 7 C 0.54 22.01 7.46 86.93 0.65 22.66 16 8 O -0.47 -23.76 9.87 -3.69 -0.04 -23.80 16 9 N -0.60 -19.98 2.97 -797.04 -2.36 -22.35 16 10 C 0.07 1.83 6.33 86.36 0.55 2.37 16 11 C -0.12 -2.34 6.08 30.67 0.19 -2.15 16 12 C -0.11 -1.99 5.88 30.62 0.18 -1.81 16 13 C -0.12 -2.76 4.46 30.82 0.14 -2.62 16 14 C 0.15 4.66 2.62 45.12 0.12 4.78 16 15 H 0.07 2.24 8.12 -2.39 -0.02 2.22 16 16 C 0.18 7.55 1.83 44.99 0.08 7.63 16 17 H 0.04 1.75 6.39 -2.39 -0.02 1.73 16 18 C -0.16 -5.68 8.67 71.98 0.62 -5.06 16 19 N -0.72 -36.87 3.00 -322.94 -0.97 -37.84 16 20 C -0.15 -9.54 8.71 84.03 0.73 -8.80 16 21 H 0.05 3.17 8.06 -2.91 -0.02 3.15 16 22 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 23 N -1.00 -68.95 13.97 21.65 0.30 -68.64 16 24 Si 0.94 51.15 27.74 68.60 1.90 53.05 16 25 H -0.30 -16.34 7.11 99.48 0.71 -15.63 16 26 H -0.30 -15.99 7.11 99.48 0.71 -15.28 16 27 H -0.26 -12.91 6.52 99.48 0.65 -12.26 16 28 N -0.34 -9.94 8.50 -49.53 -0.42 -10.36 16 29 O 0.12 2.95 11.18 71.85 0.80 3.75 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 32 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.11 1.61 8.12 -2.38 -0.02 1.59 16 34 H 0.05 0.72 8.14 -2.39 -0.02 0.70 16 35 H 0.09 0.66 8.14 -2.39 -0.02 0.64 16 36 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 37 H 0.17 5.69 8.06 -2.91 -0.02 5.66 16 38 H 0.12 3.21 3.75 -47.41 -0.18 3.03 16 39 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 40 H 0.06 1.17 8.14 -2.39 -0.02 1.15 16 41 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.09 1.17 8.14 -2.39 -0.02 1.15 16 43 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 44 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 45 H 0.10 1.90 6.71 -2.39 -0.02 1.89 16 46 H 0.03 1.23 8.01 -2.39 -0.02 1.21 16 47 H 0.08 2.25 6.45 -2.39 -0.02 2.24 16 48 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.35 18.04 5.56 -92.71 -0.52 17.52 16 50 H 0.25 16.52 8.31 -92.71 -0.77 15.75 16 Total: -1.00 -81.43 384.40 5.11 -76.32 By element: Atomic # 1 Polarization: 26.75 SS G_CDS: 0.19 Total: 26.95 kcal Atomic # 6 Polarization: -2.77 SS G_CDS: 5.70 Total: 2.93 kcal Atomic # 7 Polarization: -135.74 SS G_CDS: -3.45 Total: -139.19 kcal Atomic # 8 Polarization: -20.82 SS G_CDS: 0.77 Total: -20.05 kcal Atomic # 14 Polarization: 51.15 SS G_CDS: 1.90 Total: 53.05 kcal Total: -81.43 5.11 -76.32 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001731294363.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.977 kcal (2) G-P(sol) polarization free energy of solvation -81.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.316 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.662 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds