Wall clock time and date at job start Tue Mar 31 2020 19:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47308 * 2 1 4 4 N 1.46498 * 109.47153 * 120.01047 * 2 1 3 5 5 C 1.36940 * 119.99572 * 274.99517 * 4 2 1 6 6 H 1.08001 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00160 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00028 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00227 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47406 * 89.99906 * 9 7 5 11 11 H 1.48504 * 109.47021 * 209.99871 * 9 7 5 12 12 H 1.48503 * 109.47009 * 329.99429 * 9 7 5 13 13 C 1.53004 * 109.46611 * 240.00410 * 2 1 3 14 14 H 1.08997 * 110.92060 * 304.70869 * 13 2 1 15 15 C 1.55165 * 111.00067 * 180.81301 * 13 2 1 16 16 C 1.54330 * 102.94156 * 206.42702 * 15 13 2 17 17 N 1.47024 * 107.26868 * 22.19055 * 16 15 13 18 18 C 1.34778 * 125.64219 * 181.02621 * 17 16 15 19 19 O 1.21495 * 119.99441 * 180.02562 * 18 17 16 20 20 C 1.48329 * 120.00087 * 0.02562 * 18 17 16 21 21 C 1.42274 * 126.93543 * 179.70784 * 20 18 17 22 22 C 1.35316 * 103.92284 * 179.85598 * 21 20 18 23 23 C 1.50693 * 126.66790 * 180.11119 * 22 21 20 24 24 C 1.52999 * 109.47603 * 60.33109 * 23 22 21 25 25 C 1.53005 * 109.47270 * 180.33433 * 23 22 21 26 26 C 1.53003 * 109.47207 * 300.32749 * 23 22 21 27 27 O 1.34015 * 106.66512 * 0.40873 * 22 21 20 28 28 N 1.20908 * 111.84818 * 359.72306 * 27 22 21 29 29 C 1.47420 * 108.70451 * 1.28895 * 17 16 15 30 30 H 1.09004 * 109.47306 * 294.74460 * 1 2 3 31 31 H 1.08999 * 109.47493 * 54.74543 * 1 2 3 32 32 H 1.09007 * 109.47395 * 174.74689 * 1 2 3 33 33 H 0.96996 * 120.00673 * 94.99516 * 4 2 1 34 34 H 0.97001 * 120.00483 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.72313 * 88.05989 * 15 13 2 36 36 H 1.09002 * 110.72104 * 324.78582 * 15 13 2 37 37 H 1.09001 * 109.87494 * 262.77699 * 16 15 13 38 38 H 1.08994 * 110.00928 * 141.68140 * 16 15 13 39 39 H 1.07999 * 128.04009 * 0.02562 * 21 20 18 40 40 H 1.08999 * 109.46729 * 59.99928 * 24 23 22 41 41 H 1.08994 * 109.47154 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46897 * 300.00679 * 24 23 22 43 43 H 1.08996 * 109.47244 * 59.99771 * 25 23 22 44 44 H 1.08997 * 109.47001 * 180.02562 * 25 23 22 45 45 H 1.08999 * 109.46921 * 299.99985 * 25 23 22 46 46 H 1.09009 * 109.46516 * 60.00251 * 26 23 22 47 47 H 1.08997 * 109.47215 * 179.97438 * 26 23 22 48 48 H 1.08998 * 109.47361 * 300.00824 * 26 23 22 49 49 H 1.09000 * 110.36436 * 94.48295 * 29 17 16 50 50 H 1.08995 * 110.36529 * 216.80374 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 1.1960 5 6 2.1491 -0.0078 2.3757 6 1 1.8919 1.0400 2.4243 7 6 2.6123 -0.6621 3.5089 8 7 2.9253 -1.9392 3.4497 9 14 2.7902 0.2695 5.1182 10 1 1.5226 0.1772 5.8863 11 1 3.8952 -0.3233 5.9138 12 1 3.0942 1.6950 4.8341 13 6 2.0399 -0.7212 -1.2494 14 1 1.6230 -1.7261 -1.3161 15 6 3.5908 -0.7598 -1.2751 16 6 3.9092 -0.8543 -2.7822 17 7 2.7403 -0.3369 -3.5086 18 6 2.6155 -0.2686 -4.8488 19 8 1.5999 0.1800 -5.3421 20 6 3.7179 -0.7411 -5.7214 21 6 3.7414 -0.7431 -7.1440 22 6 4.9531 -1.2626 -7.4489 23 6 5.5121 -1.4926 -8.8292 24 6 5.5972 -0.1588 -9.5739 25 6 6.9100 -2.1047 -8.7180 26 6 4.5968 -2.4481 -9.5975 27 8 5.5568 -1.5389 -6.2847 28 7 4.8640 -1.2463 -5.3380 29 6 1.7301 0.1006 -2.5281 30 1 -0.3634 0.4302 0.9333 31 1 -0.3634 0.5932 -0.8392 32 1 -0.3634 -1.0234 -0.0941 33 1 2.2489 -1.6319 1.1524 34 1 3.2494 -2.3964 4.2414 35 1 3.9636 -1.6370 -0.7464 36 1 4.0064 0.1537 -0.8498 37 1 4.0875 -1.8935 -3.0589 38 1 4.7873 -0.2526 -3.0164 39 1 2.9722 -0.4056 -7.8227 40 1 6.2494 0.5218 -9.0266 41 1 6.0011 -0.3253 -10.5725 42 1 4.6014 0.2773 -9.6531 43 1 6.8494 -3.0550 -8.1876 44 1 7.3145 -2.2706 -9.7164 45 1 7.5621 -1.4241 -8.1707 46 1 3.6009 -2.0121 -9.6768 47 1 5.0009 -2.6142 -10.5961 48 1 4.5361 -3.3984 -9.0670 49 1 1.8311 1.1676 -2.3299 50 1 0.7272 -0.1256 -2.8901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733537755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:54 Heat of formation + Delta-G solvation = 27.392485 kcal Electronic energy + Delta-G solvation = -29098.816350 eV Core-core repulsion = 25129.383538 eV Total energy + Delta-G solvation = -3969.432812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -45.31821 -40.02037 -37.85246 -37.78282 -35.25166 -34.15700 -32.43298 -31.24047 -30.43818 -29.25507 -27.94918 -27.81952 -27.52646 -25.44011 -23.97368 -23.47825 -22.70583 -21.44726 -21.13073 -19.65969 -18.83532 -18.00895 -17.46490 -17.22820 -16.82448 -16.17444 -15.49154 -15.11363 -14.84694 -14.58024 -14.49482 -14.14485 -13.94798 -13.79148 -13.45187 -13.22744 -12.89177 -12.84177 -12.72394 -12.58791 -12.47621 -12.19651 -12.12536 -12.02357 -11.78839 -11.61367 -11.54315 -11.36061 -11.18732 -10.89282 -10.71971 -10.64196 -10.59070 -10.39422 -10.28971 -10.21775 -9.86076 -9.71553 -9.64072 -8.92058 -8.67982 -6.96984 -5.77261 -3.05742 0.93926 1.43326 2.57119 2.77182 3.05221 3.42995 3.48542 3.49756 3.74533 3.96841 4.31785 4.35449 4.49152 4.56908 4.73933 4.79781 4.84625 4.99730 5.04632 5.09263 5.15005 5.17531 5.25148 5.35274 5.36012 5.39141 5.44714 5.53329 5.56516 5.59158 5.66318 5.73059 5.74043 5.79164 5.88036 5.93323 5.96661 6.07687 6.18630 6.23883 6.41441 6.44036 6.61304 6.64268 6.86214 7.09618 7.37111 7.69834 7.74275 7.99375 8.41187 9.52664 10.09635 10.44769 11.45318 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.002127 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.490723 B =13161.375647 C =13888.540988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.185 3.815 3 H 0.050 0.950 4 N -0.722 5.722 5 C -0.236 4.236 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.933 5.933 9 Si 0.905 3.095 10 H -0.291 1.291 11 H -0.292 1.292 12 H -0.282 1.282 13 C -0.102 4.102 14 H 0.082 0.918 15 C -0.115 4.115 16 C 0.102 3.898 17 N -0.600 5.600 18 C 0.608 3.392 19 O -0.531 6.531 20 C -0.019 4.019 21 C -0.179 4.179 22 C -0.024 4.024 23 C 0.016 3.984 24 C -0.142 4.142 25 C -0.148 4.148 26 C -0.142 4.142 27 O 0.124 5.876 28 N -0.325 5.325 29 C 0.115 3.885 30 H 0.056 0.944 31 H 0.037 0.963 32 H 0.045 0.955 33 H 0.384 0.616 34 H 0.255 0.745 35 H 0.088 0.912 36 H 0.081 0.919 37 H 0.070 0.930 38 H 0.069 0.931 39 H 0.178 0.822 40 H 0.062 0.938 41 H 0.071 0.929 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.068 0.932 45 H 0.064 0.936 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.062 0.938 49 H 0.074 0.926 50 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.401 0.100 -28.506 29.216 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.075 3.925 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.367 4.367 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.581 5.581 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C -0.122 4.122 14 H 0.100 0.900 15 C -0.153 4.153 16 C -0.021 4.021 17 N -0.332 5.332 18 C 0.394 3.606 19 O -0.406 6.406 20 C -0.178 4.178 21 C -0.202 4.202 22 C -0.087 4.087 23 C 0.015 3.985 24 C -0.199 4.199 25 C -0.206 4.206 26 C -0.200 4.200 27 O 0.048 5.952 28 N -0.026 5.026 29 C -0.007 4.007 30 H 0.075 0.925 31 H 0.056 0.944 32 H 0.064 0.936 33 H 0.217 0.783 34 H 0.064 0.936 35 H 0.107 0.893 36 H 0.099 0.901 37 H 0.089 0.911 38 H 0.088 0.912 39 H 0.195 0.805 40 H 0.081 0.919 41 H 0.090 0.910 42 H 0.082 0.918 43 H 0.084 0.916 44 H 0.087 0.913 45 H 0.083 0.917 46 H 0.082 0.918 47 H 0.090 0.910 48 H 0.082 0.918 49 H 0.092 0.908 50 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 6.363 0.245 -27.438 28.167 hybrid contribution -0.348 0.319 0.462 0.661 sum 6.015 0.564 -26.976 27.644 Atomic orbital electron populations 1.22494 0.99179 1.00637 1.00478 1.20129 0.91824 0.95172 0.85394 0.93229 1.42359 1.78157 1.10676 1.05089 1.19214 1.36340 0.93861 0.87268 0.91222 1.24723 1.02270 0.95979 0.97999 1.69656 1.50977 1.08640 1.28846 0.86218 0.77265 0.78803 0.84068 1.21810 1.21838 1.20810 1.22743 0.95679 0.99791 0.94017 0.90010 1.22595 0.95943 1.04407 0.92318 1.22270 0.87548 0.99351 0.92909 1.48412 1.19774 1.60820 1.04236 1.16468 0.84819 0.78960 0.80369 1.90789 1.29118 1.46831 1.73901 1.23419 0.94933 1.05253 0.94162 1.22316 0.98681 1.05487 0.93675 1.24442 0.93124 1.01269 0.89882 1.19199 0.96532 0.97626 0.85184 1.21953 1.02992 0.94800 1.00197 1.21917 0.94224 1.01539 1.02871 1.21957 0.99169 0.98803 1.00029 1.84803 1.38878 1.60696 1.10790 1.74331 1.04320 1.13690 1.10251 1.22453 0.91867 0.99049 0.87370 0.92496 0.94393 0.93566 0.78272 0.93559 0.89313 0.90064 0.91143 0.91232 0.80467 0.91866 0.90960 0.91757 0.91637 0.91288 0.91658 0.91755 0.90957 0.91845 0.90775 0.90164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.98 9.29 37.16 0.35 -2.64 16 2 C 0.19 3.52 2.42 -67.93 -0.16 3.35 16 3 H 0.05 0.96 7.99 -51.93 -0.42 0.55 16 4 N -0.72 -17.27 4.76 -53.43 -0.25 -17.53 16 5 C -0.24 -6.35 9.93 -15.06 -0.15 -6.50 16 6 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 7 C -0.01 -0.39 5.50 -17.43 -0.10 -0.48 16 8 N -0.93 -27.66 13.06 55.49 0.72 -26.93 16 9 Si 0.91 22.20 29.55 -169.99 -5.02 17.18 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 12 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 13 C -0.10 -1.65 2.63 -88.35 -0.23 -1.88 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 15 C -0.11 -1.79 6.07 -24.89 -0.15 -1.94 16 16 C 0.10 1.44 5.56 -3.06 -0.02 1.43 16 17 N -0.60 -9.09 3.32 -171.31 -0.57 -9.66 16 18 C 0.61 9.58 7.88 -12.11 -0.10 9.49 16 19 O -0.53 -9.50 17.21 5.37 0.09 -9.40 16 20 C -0.02 -0.25 7.03 -82.53 -0.58 -0.83 16 21 C -0.18 -1.89 10.40 -39.07 -0.41 -2.30 16 22 C -0.02 -0.21 5.76 -35.35 -0.20 -0.42 16 23 C 0.02 0.09 0.94 -155.66 -0.15 -0.06 16 24 C -0.14 -0.65 8.36 37.16 0.31 -0.34 16 25 C -0.15 -0.72 8.07 37.16 0.30 -0.42 16 26 C -0.14 -0.66 8.36 37.16 0.31 -0.35 16 27 O 0.12 1.35 10.65 17.24 0.18 1.53 16 28 N -0.33 -4.23 9.73 33.29 0.32 -3.91 16 29 C 0.11 1.72 5.75 -2.41 -0.01 1.70 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.04 0.57 7.75 -51.93 -0.40 0.17 16 32 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 33 H 0.38 9.80 7.80 -40.82 -0.32 9.48 16 34 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 35 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 36 H 0.08 1.34 8.04 -51.93 -0.42 0.92 16 37 H 0.07 0.99 7.69 -51.93 -0.40 0.59 16 38 H 0.07 0.96 7.79 -51.93 -0.40 0.56 16 39 H 0.18 1.60 8.06 -52.49 -0.42 1.17 16 40 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 42 H 0.06 0.30 8.04 -51.93 -0.42 -0.12 16 43 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 44 H 0.07 0.23 8.14 -51.93 -0.42 -0.20 16 45 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 46 H 0.06 0.30 8.02 -51.92 -0.42 -0.11 16 47 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 48 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 49 H 0.07 1.09 7.98 -51.93 -0.41 0.67 16 50 H 0.08 1.21 8.03 -51.93 -0.42 0.79 16 LS Contribution 406.44 15.07 6.12 6.12 Total: -1.00 -31.50 406.44 -8.03 -39.52 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -8.64 Total: 5.26 kcal Atomic # 6 Polarization: -1.20 SS G_CDS: -0.99 Total: -2.19 kcal Atomic # 7 Polarization: -58.25 SS G_CDS: 0.22 Total: -58.03 kcal Atomic # 8 Polarization: -8.15 SS G_CDS: 0.28 Total: -7.87 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -31.50 -8.03 -39.52 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733537755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.917 kcal (2) G-P(sol) polarization free energy of solvation -31.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.524 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds