Wall clock time and date at job start Tue Mar 31 2020 19:33:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08994 * 109.47308 * 2 1 4 4 N 1.46498 * 109.47153 * 120.01047 * 2 1 3 5 5 C 1.36940 * 119.99572 * 274.99517 * 4 2 1 6 6 H 1.08001 * 119.99840 * 0.02562 * 5 4 2 7 7 C 1.38810 * 120.00160 * 180.02562 * 5 4 2 8 8 N 1.31622 * 120.00028 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00227 * 180.02562 * 7 5 4 10 10 H 1.48499 * 109.47406 * 89.99906 * 9 7 5 11 11 H 1.48504 * 109.47021 * 209.99871 * 9 7 5 12 12 H 1.48503 * 109.47009 * 329.99429 * 9 7 5 13 13 C 1.53004 * 109.46611 * 240.00410 * 2 1 3 14 14 H 1.08997 * 110.92060 * 304.70869 * 13 2 1 15 15 C 1.55165 * 111.00067 * 180.81301 * 13 2 1 16 16 C 1.54330 * 102.94156 * 206.42702 * 15 13 2 17 17 N 1.47024 * 107.26868 * 22.19055 * 16 15 13 18 18 C 1.34778 * 125.64219 * 181.02621 * 17 16 15 19 19 O 1.21495 * 119.99441 * 180.02562 * 18 17 16 20 20 C 1.48329 * 120.00087 * 0.02562 * 18 17 16 21 21 C 1.42274 * 126.93543 * 179.70784 * 20 18 17 22 22 C 1.35316 * 103.92284 * 179.85598 * 21 20 18 23 23 C 1.50693 * 126.66790 * 180.11119 * 22 21 20 24 24 C 1.52999 * 109.47603 * 60.33109 * 23 22 21 25 25 C 1.53005 * 109.47270 * 180.33433 * 23 22 21 26 26 C 1.53003 * 109.47207 * 300.32749 * 23 22 21 27 27 O 1.34015 * 106.66512 * 0.40873 * 22 21 20 28 28 N 1.20908 * 111.84818 * 359.72306 * 27 22 21 29 29 C 1.47420 * 108.70451 * 1.28895 * 17 16 15 30 30 H 1.09004 * 109.47306 * 294.74460 * 1 2 3 31 31 H 1.08999 * 109.47493 * 54.74543 * 1 2 3 32 32 H 1.09007 * 109.47395 * 174.74689 * 1 2 3 33 33 H 0.96996 * 120.00673 * 94.99516 * 4 2 1 34 34 H 0.97001 * 120.00483 * 179.97438 * 8 7 5 35 35 H 1.09000 * 110.72313 * 88.05989 * 15 13 2 36 36 H 1.09002 * 110.72104 * 324.78582 * 15 13 2 37 37 H 1.09001 * 109.87494 * 262.77699 * 16 15 13 38 38 H 1.08994 * 110.00928 * 141.68140 * 16 15 13 39 39 H 1.07999 * 128.04009 * 0.02562 * 21 20 18 40 40 H 1.08999 * 109.46729 * 59.99928 * 24 23 22 41 41 H 1.08994 * 109.47154 * 180.02562 * 24 23 22 42 42 H 1.09001 * 109.46897 * 300.00679 * 24 23 22 43 43 H 1.08996 * 109.47244 * 59.99771 * 25 23 22 44 44 H 1.08997 * 109.47001 * 180.02562 * 25 23 22 45 45 H 1.08999 * 109.46921 * 299.99985 * 25 23 22 46 46 H 1.09009 * 109.46516 * 60.00251 * 26 23 22 47 47 H 1.08997 * 109.47215 * 179.97438 * 26 23 22 48 48 H 1.08998 * 109.47361 * 300.00824 * 26 23 22 49 49 H 1.09000 * 110.36436 * 94.48295 * 29 17 16 50 50 H 1.08995 * 110.36529 * 216.80374 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0183 -0.6908 1.1960 5 6 2.1491 -0.0078 2.3757 6 1 1.8919 1.0400 2.4243 7 6 2.6123 -0.6621 3.5089 8 7 2.9253 -1.9392 3.4497 9 14 2.7902 0.2695 5.1182 10 1 1.5226 0.1772 5.8863 11 1 3.8952 -0.3233 5.9138 12 1 3.0942 1.6950 4.8341 13 6 2.0399 -0.7212 -1.2494 14 1 1.6230 -1.7261 -1.3161 15 6 3.5908 -0.7598 -1.2751 16 6 3.9092 -0.8543 -2.7822 17 7 2.7403 -0.3369 -3.5086 18 6 2.6155 -0.2686 -4.8488 19 8 1.5999 0.1800 -5.3421 20 6 3.7179 -0.7411 -5.7214 21 6 3.7414 -0.7431 -7.1440 22 6 4.9531 -1.2626 -7.4489 23 6 5.5121 -1.4926 -8.8292 24 6 5.5972 -0.1588 -9.5739 25 6 6.9100 -2.1047 -8.7180 26 6 4.5968 -2.4481 -9.5975 27 8 5.5568 -1.5389 -6.2847 28 7 4.8640 -1.2463 -5.3380 29 6 1.7301 0.1006 -2.5281 30 1 -0.3634 0.4302 0.9333 31 1 -0.3634 0.5932 -0.8392 32 1 -0.3634 -1.0234 -0.0941 33 1 2.2489 -1.6319 1.1524 34 1 3.2494 -2.3964 4.2414 35 1 3.9636 -1.6370 -0.7464 36 1 4.0064 0.1537 -0.8498 37 1 4.0875 -1.8935 -3.0589 38 1 4.7873 -0.2526 -3.0164 39 1 2.9722 -0.4056 -7.8227 40 1 6.2494 0.5218 -9.0266 41 1 6.0011 -0.3253 -10.5725 42 1 4.6014 0.2773 -9.6531 43 1 6.8494 -3.0550 -8.1876 44 1 7.3145 -2.2706 -9.7164 45 1 7.5621 -1.4241 -8.1707 46 1 3.6009 -2.0121 -9.6768 47 1 5.0009 -2.6142 -10.5961 48 1 4.5361 -3.3984 -9.0670 49 1 1.8311 1.1676 -2.3299 50 1 0.7272 -0.1256 -2.8901 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733537755.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:33:53 Heat of formation + Delta-G solvation = 9.749326 kcal Electronic energy + Delta-G solvation = -29099.581415 eV Core-core repulsion = 25129.383538 eV Total energy + Delta-G solvation = -3970.197877 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -46.22750 -41.27617 -39.19062 -38.28282 -36.87417 -35.14947 -34.21890 -32.25580 -31.72124 -30.86411 -29.07159 -28.26612 -28.15730 -26.71341 -25.70863 -24.28168 -23.90474 -22.87228 -21.98081 -21.14833 -19.88536 -19.14082 -18.92524 -18.31265 -17.90615 -17.50789 -16.67225 -16.55775 -15.91497 -15.61146 -15.43004 -15.03882 -15.00267 -14.95967 -14.74640 -14.61649 -14.13859 -13.97095 -13.94869 -13.52934 -13.28082 -13.20344 -13.19946 -12.94128 -12.79853 -12.66039 -12.55496 -12.35023 -12.23523 -12.18264 -12.04784 -12.01244 -11.78664 -11.75996 -11.61418 -11.57164 -11.56502 -11.39391 -10.92706 -10.48482 -9.91868 -8.98108 -7.91019 -5.18161 -0.02902 0.59449 1.48512 1.48955 1.53906 1.57328 1.90886 1.92233 2.57613 2.71442 3.21231 3.41830 3.47864 3.55404 3.78142 3.80492 3.91195 3.93238 3.96492 4.15465 4.20496 4.22088 4.30041 4.39376 4.45747 4.56257 4.62391 4.69711 4.78461 4.79245 4.81235 4.82746 4.90055 4.91670 5.00196 5.02021 5.02072 5.05961 5.10878 5.13892 5.25295 5.30519 5.34980 5.40194 5.43339 5.54990 5.59543 6.15203 6.31153 6.65952 6.98375 7.37980 8.13527 8.37284 9.32257 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024416 B = 0.002127 C = 0.002016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.490723 B =13161.375647 C =13888.540988 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.183 3.817 3 H 0.049 0.951 4 N -0.731 5.731 5 C -0.230 4.230 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.968 5.968 9 Si 0.966 3.034 10 H -0.291 1.291 11 H -0.298 1.298 12 H -0.271 1.271 13 C -0.092 4.092 14 H 0.079 0.921 15 C -0.109 4.109 16 C 0.115 3.885 17 N -0.602 5.602 18 C 0.606 3.394 19 O -0.557 6.557 20 C -0.043 4.043 21 C -0.186 4.186 22 C -0.006 4.006 23 C 0.017 3.983 24 C -0.142 4.142 25 C -0.149 4.149 26 C -0.142 4.142 27 O 0.128 5.872 28 N -0.342 5.342 29 C 0.120 3.880 30 H 0.038 0.962 31 H 0.068 0.932 32 H 0.043 0.957 33 H 0.373 0.627 34 H 0.249 0.751 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.073 0.927 38 H 0.075 0.925 39 H 0.191 0.809 40 H 0.056 0.944 41 H 0.093 0.907 42 H 0.062 0.938 43 H 0.059 0.941 44 H 0.090 0.910 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.094 0.906 48 H 0.056 0.944 49 H 0.081 0.919 50 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.884 0.755 -30.764 31.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.074 3.926 3 H 0.067 0.933 4 N -0.371 5.371 5 C -0.362 4.362 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.619 5.619 9 Si 0.796 3.204 10 H -0.219 1.219 11 H -0.225 1.225 12 H -0.196 1.196 13 C -0.112 4.112 14 H 0.098 0.902 15 C -0.147 4.147 16 C -0.007 4.007 17 N -0.334 5.334 18 C 0.394 3.606 19 O -0.435 6.435 20 C -0.200 4.200 21 C -0.209 4.209 22 C -0.070 4.070 23 C 0.016 3.984 24 C -0.199 4.199 25 C -0.206 4.206 26 C -0.199 4.199 27 O 0.051 5.949 28 N -0.041 5.041 29 C -0.002 4.002 30 H 0.057 0.943 31 H 0.087 0.913 32 H 0.062 0.938 33 H 0.205 0.795 34 H 0.058 0.942 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.091 0.909 38 H 0.094 0.906 39 H 0.208 0.792 40 H 0.075 0.925 41 H 0.112 0.888 42 H 0.082 0.918 43 H 0.078 0.922 44 H 0.108 0.892 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.112 0.888 48 H 0.075 0.925 49 H 0.099 0.901 50 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 6.828 0.937 -29.713 30.501 hybrid contribution -0.480 0.124 1.028 1.142 sum 6.348 1.061 -28.684 29.397 Atomic orbital electron populations 1.22360 0.97800 1.00982 1.00798 1.20294 0.92614 0.94894 0.84782 0.93309 1.42509 1.78355 1.10294 1.05901 1.19558 1.34345 0.94097 0.88220 0.90779 1.25456 1.03344 0.96851 1.01136 1.69803 1.52834 1.10066 1.29213 0.85240 0.76678 0.78124 0.80334 1.21858 1.22475 1.19552 1.22538 0.95850 0.99490 0.93322 0.90220 1.22487 0.95556 1.03456 0.93249 1.22136 0.87432 0.99620 0.91535 1.48449 1.19882 1.60752 1.04361 1.16740 0.85048 0.78413 0.80447 1.90761 1.30281 1.48109 1.74332 1.23327 0.94840 1.06712 0.95124 1.22503 0.99740 1.06100 0.92564 1.25090 0.92313 0.99158 0.90391 1.19441 0.97082 0.98703 0.83205 1.21981 1.03022 0.93836 1.01046 1.21946 0.93590 1.00996 1.04078 1.21986 0.99042 0.98021 1.00870 1.84774 1.38625 1.60159 1.11311 1.74315 1.04351 1.14188 1.11264 1.22368 0.92094 0.99095 0.86621 0.94308 0.91341 0.93754 0.79479 0.94233 0.90402 0.90870 0.90876 0.90636 0.79209 0.92481 0.88781 0.91844 0.92196 0.89156 0.92150 0.91841 0.88770 0.92533 0.90105 0.89846 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.51 9.29 71.98 0.67 -4.84 16 2 C 0.18 6.85 2.42 44.99 0.11 6.96 16 3 H 0.05 1.85 7.99 -2.39 -0.02 1.83 16 4 N -0.73 -35.18 4.76 -322.95 -1.54 -36.71 16 5 C -0.23 -12.41 9.93 84.03 0.83 -11.57 16 6 H 0.07 3.86 7.83 -2.91 -0.02 3.84 16 7 C -0.08 -4.28 5.50 84.86 0.47 -3.81 16 8 N -0.97 -58.40 13.06 21.65 0.28 -58.12 16 9 Si 0.97 45.93 29.55 68.60 2.03 47.95 16 10 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 11 H -0.30 -14.34 7.11 99.48 0.71 -13.63 16 12 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 13 C -0.09 -2.92 2.63 -9.32 -0.02 -2.95 16 14 H 0.08 2.59 8.14 -2.39 -0.02 2.57 16 15 C -0.11 -3.42 6.07 31.79 0.19 -3.22 16 16 C 0.12 3.22 5.56 86.73 0.48 3.70 16 17 N -0.60 -17.89 3.32 -814.22 -2.71 -20.59 16 18 C 0.61 18.86 7.88 86.93 0.68 19.55 16 19 O -0.56 -19.73 17.21 -3.70 -0.06 -19.79 16 20 C -0.04 -1.13 7.03 42.96 0.30 -0.83 16 21 C -0.19 -3.75 10.40 22.60 0.24 -3.51 16 22 C -0.01 -0.10 5.76 25.01 0.14 0.04 16 23 C 0.02 0.15 0.94 -52.93 -0.05 0.10 16 24 C -0.14 -0.94 8.36 71.98 0.60 -0.34 16 25 C -0.15 -1.10 8.07 71.98 0.58 -0.51 16 26 C -0.14 -0.96 8.36 71.98 0.60 -0.36 16 27 O 0.13 2.68 10.65 71.88 0.77 3.44 16 28 N -0.34 -8.68 9.73 -49.52 -0.48 -9.16 16 29 C 0.12 3.48 5.75 86.93 0.50 3.98 16 30 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 31 H 0.07 1.94 7.75 -2.39 -0.02 1.92 16 32 H 0.04 1.53 8.14 -2.38 -0.02 1.51 16 33 H 0.37 19.41 7.80 -92.71 -0.72 18.69 16 34 H 0.25 14.68 8.31 -92.71 -0.77 13.91 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 2.40 8.04 -2.39 -0.02 2.38 16 37 H 0.07 2.03 7.69 -2.39 -0.02 2.01 16 38 H 0.08 2.05 7.79 -2.39 -0.02 2.03 16 39 H 0.19 3.20 8.06 -2.91 -0.02 3.18 16 40 H 0.06 0.46 8.14 -2.39 -0.02 0.45 16 41 H 0.09 0.25 8.14 -2.39 -0.02 0.23 16 42 H 0.06 0.45 8.04 -2.39 -0.02 0.43 16 43 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 44 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 45 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 46 H 0.06 0.46 8.02 -2.38 -0.02 0.44 16 47 H 0.09 0.26 8.14 -2.39 -0.02 0.24 16 48 H 0.06 0.48 8.14 -2.39 -0.02 0.46 16 49 H 0.08 2.25 7.98 -2.39 -0.02 2.23 16 50 H 0.08 2.39 8.03 -2.39 -0.02 2.37 16 Total: -1.00 -67.53 406.44 4.81 -62.71 By element: Atomic # 1 Polarization: 27.70 SS G_CDS: 0.20 Total: 27.89 kcal Atomic # 6 Polarization: -3.95 SS G_CDS: 6.33 Total: 2.38 kcal Atomic # 7 Polarization: -120.15 SS G_CDS: -4.44 Total: -124.59 kcal Atomic # 8 Polarization: -17.05 SS G_CDS: 0.70 Total: -16.35 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.95 kcal Total: -67.53 4.81 -62.71 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733537755.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.462 kcal (2) G-P(sol) polarization free energy of solvation -67.527 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.935 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.713 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.749 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds