Wall clock time and date at job start Tue Mar 31 2020 18:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.39253 * 2 1 4 4 C 1.54385 * 110.34276 * 122.23782 * 2 1 3 5 5 N 1.48148 * 104.61857 * 142.73145 * 4 2 1 6 6 C 1.34776 * 127.83663 * 140.41458 * 5 4 2 7 7 O 1.21278 * 120.00107 * 180.02562 * 6 5 4 8 8 C 1.50704 * 120.00202 * 0.03393 * 6 5 4 9 9 C 1.54641 * 111.03154 * 295.32948 * 8 6 5 10 10 C 1.51165 * 104.68965 * 217.35854 * 9 8 6 11 11 C 1.30527 * 111.12279 * 16.38628 * 10 9 8 12 12 C 1.51101 * 111.10285 * 0.02562 * 11 10 9 13 13 C 1.48307 * 104.39477 * 320.47438 * 5 4 2 14 14 C 1.54294 * 110.33914 * 237.77105 * 2 1 3 15 15 H 1.09007 * 110.33963 * 122.15521 * 14 2 1 16 16 C 1.53000 * 110.34099 * 0.02562 * 14 2 1 17 17 N 1.46901 * 109.46855 * 176.47126 * 16 14 2 18 18 C 1.46898 * 111.00189 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.47176 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00279 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99735 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99904 * 179.97438 * 21 19 18 23 23 H 1.07991 * 119.99780 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99815 * 179.72596 * 22 21 19 25 25 N 1.31412 * 119.99962 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99686 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46935 * 60.00256 * 26 24 22 28 28 H 1.48495 * 109.46983 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47384 * 300.00256 * 26 24 22 30 30 H 1.08993 * 109.47786 * 182.22862 * 1 2 3 31 31 H 1.09004 * 109.47005 * 302.23257 * 1 2 3 32 32 H 1.09002 * 109.46994 * 62.22431 * 1 2 3 33 33 H 1.08999 * 110.40834 * 261.51974 * 4 2 1 34 34 H 1.08997 * 110.40858 * 23.94780 * 4 2 1 35 35 H 1.09006 * 110.91612 * 59.28900 * 8 6 5 36 36 H 1.08993 * 110.38827 * 336.14524 * 9 8 6 37 37 H 1.09001 * 110.38786 * 98.52585 * 9 8 6 38 38 H 1.08002 * 124.43320 * 196.40206 * 10 9 8 39 39 H 1.07999 * 124.44788 * 180.02562 * 11 10 9 40 40 H 1.08997 * 110.38612 * 224.75165 * 12 11 10 41 41 H 1.09005 * 110.38483 * 102.37734 * 12 11 10 42 42 H 1.09005 * 110.38133 * 280.73639 * 13 5 4 43 43 H 1.08995 * 110.50913 * 158.24931 * 13 5 4 44 44 H 1.08998 * 109.47488 * 56.47328 * 16 14 2 45 45 H 1.08993 * 109.47041 * 296.46955 * 16 14 2 46 46 H 1.00907 * 110.99760 * 56.04664 * 17 16 14 47 47 H 1.09000 * 109.46741 * 60.00112 * 18 17 16 48 48 H 1.09002 * 109.46898 * 300.00102 * 18 17 16 49 49 H 0.97005 * 120.00189 * 0.02562 * 21 19 18 50 50 H 0.97000 * 119.99308 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0667 -0.7722 1.2244 5 7 3.2663 -1.4819 0.7224 6 6 4.4423 -1.6667 1.3543 7 8 5.3367 -2.2747 0.8054 8 6 4.6460 -1.1181 2.7431 9 6 4.5945 0.4274 2.7423 10 6 5.6406 0.8463 3.7500 11 6 6.4548 -0.1376 4.0193 12 6 6.0885 -1.3768 3.2362 13 6 2.8817 -1.9423 -0.6339 14 6 2.0663 -0.7716 -1.2238 15 1 2.7080 -0.1282 -1.8259 16 6 0.9060 -1.3029 -2.0678 17 7 1.4358 -1.9601 -3.2701 18 6 0.3478 -2.4844 -4.1063 19 6 0.9287 -3.1504 -5.3269 20 8 2.1307 -3.1853 -5.4846 21 7 0.1124 -3.7081 -6.2429 22 6 0.6408 -4.3136 -7.3538 23 1 1.7110 -4.3439 -7.4945 24 6 -0.2006 -4.8936 -8.2953 25 7 -1.5028 -4.8614 -8.1212 26 14 0.5194 -5.7192 -9.8084 27 1 1.4094 -6.8314 -9.3891 28 1 -0.5802 -6.2561 -10.6497 29 1 1.3013 -4.7269 -10.5889 30 1 -0.3634 -1.0268 0.0400 31 1 -0.3633 0.5481 0.8693 32 1 -0.3633 0.4789 -0.9093 33 1 2.3401 -0.0797 2.0205 34 1 1.3234 -1.4861 1.5792 35 1 3.9149 -1.5336 3.4367 36 1 4.8424 0.8151 1.7543 37 1 3.6084 0.7747 3.0511 38 1 5.7054 1.8307 4.1895 39 1 7.2817 -0.0743 4.7111 40 1 6.1178 -2.2556 3.8804 41 1 6.7624 -1.5035 2.3889 42 1 2.2664 -2.8398 -0.5699 43 1 3.7685 -2.1307 -1.2390 44 1 0.2608 -0.4747 -2.3610 45 1 0.3315 -2.0220 -1.4840 46 1 2.0876 -2.6905 -3.0254 47 1 -0.3016 -1.6646 -4.4135 48 1 -0.2302 -3.2118 -3.5363 49 1 -0.8490 -3.6805 -6.1167 50 1 -2.0900 -5.2660 -8.7788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733543256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:26 Heat of formation + Delta-G solvation = -50.203050 kcal Electronic energy + Delta-G solvation = -28661.657810 eV Core-core repulsion = 24688.860202 eV Total energy + Delta-G solvation = -3972.797607 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.81207 -39.18416 -38.18158 -37.51112 -35.35057 -33.87821 -33.09706 -31.23453 -30.79978 -29.65263 -28.56814 -27.16244 -26.60695 -25.00113 -23.88198 -22.76455 -21.88632 -19.60669 -19.38876 -19.17643 -18.88673 -17.86285 -17.49057 -16.69962 -16.60318 -16.05174 -15.69125 -15.35414 -14.97065 -14.58648 -14.54288 -14.31953 -13.95226 -13.64970 -13.34298 -13.23227 -13.05026 -12.78028 -12.64153 -12.60742 -12.41502 -12.25517 -12.10370 -12.02563 -11.90352 -11.65639 -11.55224 -11.47333 -11.46774 -11.01207 -10.89304 -10.75382 -10.60789 -10.42753 -10.19675 -10.00072 -9.48428 -9.29009 -8.98127 -8.44943 -8.04980 -7.94313 -6.40279 -3.80952 1.85826 2.38761 2.65215 3.21771 3.27081 3.31917 3.92077 3.95382 4.07534 4.13018 4.21336 4.26400 4.39751 4.46738 4.64645 4.75513 4.85890 4.92045 5.03399 5.07375 5.11041 5.16068 5.19590 5.25011 5.27037 5.28798 5.36382 5.41888 5.44702 5.50180 5.51460 5.59574 5.64124 5.75729 5.79716 5.81316 5.88975 5.94180 5.99493 6.02190 6.12489 6.20323 6.28341 6.46552 7.21229 7.31197 7.56692 7.64751 7.93080 8.07875 8.63003 9.19508 9.55845 10.07595 10.77399 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.001910 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.204210 B =14658.513639 C =15596.688247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.100 4.100 3 H 0.083 0.917 4 C 0.099 3.901 5 N -0.622 5.622 6 C 0.542 3.458 7 O -0.535 6.535 8 C -0.112 4.112 9 C -0.089 4.089 10 C -0.172 4.172 11 C -0.159 4.159 12 C -0.089 4.089 13 C 0.106 3.894 14 C -0.096 4.096 15 H 0.093 0.907 16 C 0.067 3.933 17 N -0.671 5.671 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.564 5.564 22 C -0.300 4.300 23 H 0.102 0.898 24 C 0.022 3.978 25 N -0.903 5.903 26 Si 0.931 3.069 27 H -0.274 1.274 28 H -0.285 1.285 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.055 0.945 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.095 0.905 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.079 0.921 45 H 0.031 0.969 46 H 0.348 0.652 47 H 0.086 0.914 48 H 0.043 0.957 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 12.369 26.753 29.666 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.119 4.119 3 H 0.101 0.899 4 C -0.024 4.024 5 N -0.356 5.356 6 C 0.331 3.669 7 O -0.411 6.411 8 C -0.133 4.133 9 C -0.126 4.126 10 C -0.190 4.190 11 C -0.177 4.177 12 C -0.126 4.126 13 C -0.016 4.016 14 C -0.116 4.116 15 H 0.111 0.889 16 C -0.063 4.063 17 N -0.304 5.304 18 C -0.081 4.081 19 C 0.225 3.775 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.544 5.544 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.080 0.920 31 H 0.074 0.926 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.092 0.908 35 H 0.122 0.878 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.145 0.855 40 H 0.094 0.906 41 H 0.114 0.886 42 H 0.088 0.912 43 H 0.107 0.893 44 H 0.098 0.902 45 H 0.049 0.951 46 H 0.168 0.832 47 H 0.104 0.896 48 H 0.061 0.939 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 4.676 12.473 25.912 29.135 hybrid contribution -0.774 -1.132 -0.163 1.381 sum 3.902 11.342 25.749 28.406 Atomic orbital electron populations 1.21928 0.93859 1.02474 1.02315 1.22088 0.96460 0.99559 0.93838 0.89868 1.22652 0.86902 0.95697 0.97146 1.48980 1.12904 1.55915 1.17771 1.20016 0.80302 0.79427 0.87186 1.90731 1.41141 1.41699 1.67536 1.22138 1.00026 0.97104 0.94054 1.21380 0.99080 0.92586 0.99531 1.23218 0.97637 0.99285 0.98874 1.23330 0.99502 0.95511 0.99367 1.21309 0.94388 0.97002 0.99932 1.22498 0.99862 0.96575 0.82683 1.22158 0.97199 0.96784 0.95412 0.88898 1.22159 0.95425 0.98540 0.90131 1.60099 1.16420 1.35924 1.17965 1.21659 0.93433 0.98590 0.94453 1.19825 0.87588 0.84412 0.85649 1.90531 1.14797 1.62912 1.78378 1.41858 1.08775 1.49815 1.19626 1.19664 0.94391 1.31361 0.97494 0.87974 1.25259 0.95136 0.97960 0.99590 1.69606 1.02308 1.45508 1.36967 0.85913 0.78148 0.79472 0.80664 1.19928 1.20993 1.19879 0.91956 0.92565 0.91439 0.89961 0.90834 0.87756 0.90144 0.90331 0.85497 0.85484 0.90608 0.88639 0.91225 0.89254 0.90241 0.95087 0.83226 0.89586 0.93938 0.77477 0.91856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.89 7.94 37.16 0.29 -0.59 16 2 C -0.10 -0.70 3.66 -89.22 -0.33 -1.03 16 3 H 0.08 0.55 8.14 -51.93 -0.42 0.12 16 4 C 0.10 0.67 6.35 -2.41 -0.02 0.66 16 5 N -0.62 -6.32 3.32 -169.18 -0.56 -6.88 16 6 C 0.54 6.35 7.17 -10.98 -0.08 6.27 16 7 O -0.53 -8.57 15.80 5.56 0.09 -8.48 16 8 C -0.11 -0.92 2.95 -90.05 -0.27 -1.19 16 9 C -0.09 -0.60 5.37 -26.79 -0.14 -0.74 16 10 C -0.17 -1.12 10.78 -35.67 -0.38 -1.51 16 11 C -0.16 -1.12 10.78 -35.70 -0.38 -1.50 16 12 C -0.09 -0.76 6.16 -26.83 -0.17 -0.93 16 13 C 0.11 1.21 5.82 -2.32 -0.01 1.19 16 14 C -0.10 -0.96 3.30 -89.21 -0.29 -1.25 16 15 H 0.09 1.07 8.14 -51.93 -0.42 0.65 16 16 C 0.07 0.75 3.88 -3.82 -0.01 0.73 16 17 N -0.67 -10.62 6.13 -115.06 -0.71 -11.33 16 18 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 19 C 0.44 10.48 7.82 -10.99 -0.09 10.39 16 20 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 21 N -0.56 -14.40 5.29 -10.96 -0.06 -14.46 16 22 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 23 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 24 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 25 N -0.90 -24.64 13.05 55.50 0.72 -23.92 16 26 Si 0.93 21.28 29.55 -169.99 -5.02 16.26 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 H -0.27 -6.22 7.11 56.52 0.40 -5.82 16 30 H 0.06 0.39 6.85 -51.93 -0.36 0.04 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.43 6.71 -51.93 -0.35 0.08 16 33 H 0.08 0.41 5.23 -51.93 -0.27 0.14 16 34 H 0.07 0.45 7.83 -51.93 -0.41 0.04 16 35 H 0.10 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.08 0.64 7.88 -51.93 -0.41 0.23 16 37 H 0.08 0.38 6.70 -51.93 -0.35 0.03 16 38 H 0.13 0.62 8.06 -52.49 -0.42 0.20 16 39 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 40 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.10 1.03 7.01 -51.93 -0.36 0.67 16 42 H 0.07 0.78 7.78 -51.93 -0.40 0.37 16 43 H 0.09 1.24 7.89 -51.93 -0.41 0.83 16 44 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 45 H 0.03 0.32 6.89 -51.93 -0.36 -0.04 16 46 H 0.35 5.84 7.69 -39.29 -0.30 5.53 16 47 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 48 H 0.04 0.67 8.14 -51.93 -0.42 0.24 16 49 H 0.39 9.51 7.90 -40.82 -0.32 9.19 16 50 H 0.27 7.03 8.31 -40.82 -0.34 6.69 16 LS Contribution 395.07 15.07 5.95 5.95 Total: -1.00 -33.90 395.07 -9.60 -43.50 By element: Atomic # 1 Polarization: 20.02 SS G_CDS: -7.96 Total: 12.06 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.15 Total: 3.28 kcal Atomic # 7 Polarization: -55.98 SS G_CDS: -0.60 Total: -56.58 kcal Atomic # 8 Polarization: -24.65 SS G_CDS: 0.18 Total: -24.47 kcal Atomic # 14 Polarization: 21.28 SS G_CDS: -5.02 Total: 16.26 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.90 -9.60 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733543256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.701 kcal (2) G-P(sol) polarization free energy of solvation -33.901 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.602 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds