Wall clock time and date at job start Tue Mar 31 2020 18:31:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08994 * 110.39253 * 2 1 4 4 C 1.54385 * 110.34276 * 122.23782 * 2 1 3 5 5 N 1.48148 * 104.61857 * 142.73145 * 4 2 1 6 6 C 1.34776 * 127.83663 * 140.41458 * 5 4 2 7 7 O 1.21278 * 120.00107 * 180.02562 * 6 5 4 8 8 C 1.50704 * 120.00202 * 0.03393 * 6 5 4 9 9 C 1.54641 * 111.03154 * 295.32948 * 8 6 5 10 10 C 1.51165 * 104.68965 * 217.35854 * 9 8 6 11 11 C 1.30527 * 111.12279 * 16.38628 * 10 9 8 12 12 C 1.51101 * 111.10285 * 0.02562 * 11 10 9 13 13 C 1.48307 * 104.39477 * 320.47438 * 5 4 2 14 14 C 1.54294 * 110.33914 * 237.77105 * 2 1 3 15 15 H 1.09007 * 110.33963 * 122.15521 * 14 2 1 16 16 C 1.53000 * 110.34099 * 0.02562 * 14 2 1 17 17 N 1.46901 * 109.46855 * 176.47126 * 16 14 2 18 18 C 1.46898 * 111.00189 * 179.97438 * 17 16 14 19 19 C 1.50696 * 109.47176 * 180.02562 * 18 17 16 20 20 O 1.21288 * 120.00279 * 0.02562 * 19 18 17 21 21 N 1.34777 * 119.99735 * 179.97438 * 19 18 17 22 22 C 1.37105 * 119.99904 * 179.97438 * 21 19 18 23 23 H 1.07991 * 119.99780 * 0.02562 * 22 21 19 24 24 C 1.38954 * 119.99815 * 179.72596 * 22 21 19 25 25 N 1.31412 * 119.99962 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 119.99686 * 180.02562 * 24 22 21 27 27 H 1.48497 * 109.46935 * 60.00256 * 26 24 22 28 28 H 1.48495 * 109.46983 * 179.97438 * 26 24 22 29 29 H 1.48499 * 109.47384 * 300.00256 * 26 24 22 30 30 H 1.08993 * 109.47786 * 182.22862 * 1 2 3 31 31 H 1.09004 * 109.47005 * 302.23257 * 1 2 3 32 32 H 1.09002 * 109.46994 * 62.22431 * 1 2 3 33 33 H 1.08999 * 110.40834 * 261.51974 * 4 2 1 34 34 H 1.08997 * 110.40858 * 23.94780 * 4 2 1 35 35 H 1.09006 * 110.91612 * 59.28900 * 8 6 5 36 36 H 1.08993 * 110.38827 * 336.14524 * 9 8 6 37 37 H 1.09001 * 110.38786 * 98.52585 * 9 8 6 38 38 H 1.08002 * 124.43320 * 196.40206 * 10 9 8 39 39 H 1.07999 * 124.44788 * 180.02562 * 11 10 9 40 40 H 1.08997 * 110.38612 * 224.75165 * 12 11 10 41 41 H 1.09005 * 110.38483 * 102.37734 * 12 11 10 42 42 H 1.09005 * 110.38133 * 280.73639 * 13 5 4 43 43 H 1.08995 * 110.50913 * 158.24931 * 13 5 4 44 44 H 1.08998 * 109.47488 * 56.47328 * 16 14 2 45 45 H 1.08993 * 109.47041 * 296.46955 * 16 14 2 46 46 H 1.00907 * 110.99760 * 56.04664 * 17 16 14 47 47 H 1.09000 * 109.46741 * 60.00112 * 18 17 16 48 48 H 1.09002 * 109.46898 * 300.00102 * 18 17 16 49 49 H 0.97005 * 120.00189 * 0.02562 * 21 19 18 50 50 H 0.97000 * 119.99308 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0216 0.0000 4 6 2.0667 -0.7722 1.2244 5 7 3.2663 -1.4819 0.7224 6 6 4.4423 -1.6667 1.3543 7 8 5.3367 -2.2747 0.8054 8 6 4.6460 -1.1181 2.7431 9 6 4.5945 0.4274 2.7423 10 6 5.6406 0.8463 3.7500 11 6 6.4548 -0.1376 4.0193 12 6 6.0885 -1.3768 3.2362 13 6 2.8817 -1.9423 -0.6339 14 6 2.0663 -0.7716 -1.2238 15 1 2.7080 -0.1282 -1.8259 16 6 0.9060 -1.3029 -2.0678 17 7 1.4358 -1.9601 -3.2701 18 6 0.3478 -2.4844 -4.1063 19 6 0.9287 -3.1504 -5.3269 20 8 2.1307 -3.1853 -5.4846 21 7 0.1124 -3.7081 -6.2429 22 6 0.6408 -4.3136 -7.3538 23 1 1.7110 -4.3439 -7.4945 24 6 -0.2006 -4.8936 -8.2953 25 7 -1.5028 -4.8614 -8.1212 26 14 0.5194 -5.7192 -9.8084 27 1 1.4094 -6.8314 -9.3891 28 1 -0.5802 -6.2561 -10.6497 29 1 1.3013 -4.7269 -10.5889 30 1 -0.3634 -1.0268 0.0400 31 1 -0.3633 0.5481 0.8693 32 1 -0.3633 0.4789 -0.9093 33 1 2.3401 -0.0797 2.0205 34 1 1.3234 -1.4861 1.5792 35 1 3.9149 -1.5336 3.4367 36 1 4.8424 0.8151 1.7543 37 1 3.6084 0.7747 3.0511 38 1 5.7054 1.8307 4.1895 39 1 7.2817 -0.0743 4.7111 40 1 6.1178 -2.2556 3.8804 41 1 6.7624 -1.5035 2.3889 42 1 2.2664 -2.8398 -0.5699 43 1 3.7685 -2.1307 -1.2390 44 1 0.2608 -0.4747 -2.3610 45 1 0.3315 -2.0220 -1.4840 46 1 2.0876 -2.6905 -3.0254 47 1 -0.3016 -1.6646 -4.4135 48 1 -0.2302 -3.2118 -3.5363 49 1 -0.8490 -3.6805 -6.1167 50 1 -2.0900 -5.2660 -8.7788 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733543256.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:25 Heat of formation + Delta-G solvation = -74.277341 kcal Electronic energy + Delta-G solvation = -28662.701749 eV Core-core repulsion = 24688.860202 eV Total energy + Delta-G solvation = -3973.841547 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.61154 -40.25416 -39.72557 -38.32925 -36.61325 -35.82528 -33.99107 -33.26531 -31.60103 -30.46605 -29.17780 -28.35783 -27.45213 -26.41747 -25.11734 -23.72306 -22.56544 -21.16707 -20.19604 -20.09777 -19.83322 -19.61963 -18.26846 -17.93706 -17.24043 -17.20341 -16.94864 -16.50097 -16.26857 -16.05710 -15.81448 -15.31529 -15.21411 -15.05278 -14.51550 -14.22881 -13.87625 -13.79501 -13.57769 -13.52807 -13.29258 -13.09509 -13.05081 -13.03380 -12.98096 -12.76414 -12.68161 -12.61823 -12.44497 -12.20232 -12.13207 -12.05332 -11.63523 -11.52122 -11.46727 -11.33735 -10.93296 -10.35660 -10.02590 -9.83876 -9.82317 -9.29887 -8.47640 -5.96351 1.34878 1.38778 1.40638 1.50931 1.51560 1.85619 2.04638 2.28479 2.90816 3.19475 3.31575 3.48148 3.50446 3.59565 3.71646 3.79318 3.95160 4.12537 4.18575 4.31824 4.33480 4.34669 4.40696 4.48942 4.50056 4.54210 4.56451 4.63320 4.70303 4.73450 4.76745 4.80012 4.81588 4.86753 4.94227 5.05546 5.06462 5.16148 5.23339 5.25155 5.38514 5.39764 5.56331 5.60756 5.89188 5.97461 6.11712 6.36846 6.50585 6.59650 7.04990 7.11783 7.55391 8.11490 8.69393 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.022792 B = 0.001910 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1228.204210 B =14658.513639 C =15596.688247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 H 0.093 0.907 4 C 0.097 3.903 5 N -0.621 5.621 6 C 0.533 3.467 7 O -0.593 6.593 8 C -0.106 4.106 9 C -0.087 4.087 10 C -0.165 4.165 11 C -0.171 4.171 12 C -0.095 4.095 13 C 0.104 3.896 14 C -0.089 4.089 15 H 0.072 0.928 16 C 0.071 3.929 17 N -0.691 5.691 18 C 0.067 3.933 19 C 0.434 3.566 20 O -0.627 6.627 21 N -0.572 5.572 22 C -0.337 4.337 23 H 0.076 0.924 24 C -0.012 4.012 25 N -0.918 5.918 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.268 1.268 29 H -0.273 1.273 30 H 0.061 0.939 31 H 0.076 0.924 32 H 0.064 0.936 33 H 0.108 0.892 34 H 0.089 0.911 35 H 0.129 0.871 36 H 0.066 0.934 37 H 0.109 0.891 38 H 0.149 0.851 39 H 0.141 0.859 40 H 0.079 0.921 41 H 0.063 0.937 42 H 0.072 0.928 43 H 0.050 0.950 44 H 0.094 0.906 45 H 0.050 0.950 46 H 0.338 0.662 47 H 0.108 0.892 48 H 0.068 0.932 49 H 0.397 0.603 50 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.116 13.956 28.866 32.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.109 4.109 3 H 0.111 0.889 4 C -0.024 4.024 5 N -0.353 5.353 6 C 0.323 3.677 7 O -0.473 6.473 8 C -0.127 4.127 9 C -0.124 4.124 10 C -0.183 4.183 11 C -0.189 4.189 12 C -0.132 4.132 13 C -0.019 4.019 14 C -0.109 4.109 15 H 0.090 0.910 16 C -0.057 4.057 17 N -0.323 5.323 18 C -0.066 4.066 19 C 0.222 3.778 20 O -0.514 6.514 21 N -0.209 5.209 22 C -0.466 4.466 23 H 0.094 0.906 24 C -0.211 4.211 25 N -0.559 5.559 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.192 1.192 29 H -0.198 1.198 30 H 0.080 0.920 31 H 0.095 0.905 32 H 0.083 0.917 33 H 0.126 0.874 34 H 0.107 0.893 35 H 0.147 0.853 36 H 0.084 0.916 37 H 0.127 0.873 38 H 0.167 0.833 39 H 0.159 0.841 40 H 0.098 0.902 41 H 0.081 0.919 42 H 0.090 0.910 43 H 0.069 0.931 44 H 0.112 0.888 45 H 0.068 0.932 46 H 0.156 0.844 47 H 0.126 0.874 48 H 0.086 0.914 49 H 0.232 0.768 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 2.347 14.098 28.055 31.486 hybrid contribution -0.060 -1.612 -0.809 1.804 sum 2.287 12.486 27.246 30.058 Atomic orbital electron populations 1.21920 0.92381 1.02812 1.03231 1.22076 0.97512 0.99461 0.91900 0.88856 1.22933 0.85591 0.96242 0.97614 1.49094 1.13576 1.55441 1.17159 1.20753 0.79892 0.78673 0.88334 1.90702 1.43126 1.44384 1.69119 1.22181 1.00268 0.98391 0.91867 1.21418 1.00902 0.90995 0.99047 1.23452 0.96845 0.99924 0.98058 1.23400 1.00549 0.94880 1.00071 1.21306 0.94318 0.98429 0.99165 1.22405 0.98528 0.97601 0.83384 1.22052 0.96430 0.96054 0.96348 0.90971 1.22274 0.95918 0.98888 0.88622 1.60121 1.16304 1.35628 1.20258 1.21528 0.93733 0.99345 0.91947 1.21000 0.87011 0.83107 0.86705 1.90499 1.16968 1.64261 1.79624 1.41919 1.09145 1.50236 1.19631 1.19620 0.93642 1.33768 0.99602 0.90576 1.26020 0.95505 0.97824 1.01798 1.69659 1.02956 1.45420 1.37838 0.85004 0.77824 0.78330 0.77261 1.19875 1.19238 1.19807 0.91982 0.90470 0.91676 0.87357 0.89263 0.85290 0.91580 0.87324 0.83296 0.84091 0.90216 0.91881 0.91027 0.93092 0.88764 0.93230 0.84352 0.87356 0.91406 0.76850 0.91240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 7.94 71.98 0.57 -0.60 16 2 C -0.09 -1.00 3.66 -9.88 -0.04 -1.04 16 3 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 4 C 0.10 1.02 6.35 86.53 0.55 1.57 16 5 N -0.62 -12.34 3.32 -807.54 -2.68 -15.02 16 6 C 0.53 12.82 7.17 87.66 0.63 13.45 16 7 O -0.59 -20.64 15.80 -3.02 -0.05 -20.69 16 8 C -0.11 -1.63 2.95 -10.42 -0.03 -1.66 16 9 C -0.09 -0.96 5.37 30.55 0.16 -0.79 16 10 C -0.17 -1.73 10.78 26.28 0.28 -1.45 16 11 C -0.17 -2.18 10.78 26.26 0.28 -1.90 16 12 C -0.09 -1.65 6.16 30.53 0.19 -1.46 16 13 C 0.10 2.45 5.82 86.50 0.50 2.95 16 14 C -0.09 -1.71 3.30 -9.88 -0.03 -1.74 16 15 H 0.07 1.70 8.14 -2.38 -0.02 1.68 16 16 C 0.07 1.46 3.88 86.30 0.33 1.80 16 17 N -0.69 -21.72 6.13 -517.95 -3.17 -24.89 16 18 C 0.07 2.26 6.17 85.56 0.53 2.78 16 19 C 0.43 21.08 7.82 87.66 0.69 21.77 16 20 O -0.63 -36.03 15.78 -3.05 -0.05 -36.08 16 21 N -0.57 -29.75 5.29 -306.99 -1.62 -31.37 16 22 C -0.34 -19.50 9.68 84.04 0.81 -18.68 16 23 H 0.08 4.72 7.16 -2.92 -0.02 4.70 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.16 16 25 N -0.92 -49.69 13.05 21.66 0.28 -49.41 16 26 Si 0.99 43.60 29.55 68.60 2.03 45.63 16 27 H -0.27 -11.94 7.11 99.48 0.71 -11.23 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.29 16 29 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 30 H 0.06 0.53 6.85 -2.39 -0.02 0.51 16 31 H 0.08 0.35 8.14 -2.38 -0.02 0.33 16 32 H 0.06 0.59 6.71 -2.39 -0.02 0.57 16 33 H 0.11 0.60 5.23 -2.39 -0.01 0.59 16 34 H 0.09 0.73 7.83 -2.39 -0.02 0.71 16 35 H 0.13 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.07 0.96 7.88 -2.39 -0.02 0.94 16 37 H 0.11 0.55 6.70 -2.39 -0.02 0.53 16 38 H 0.15 0.93 8.06 -2.91 -0.02 0.90 16 39 H 0.14 1.34 8.06 -2.91 -0.02 1.31 16 40 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 41 H 0.06 1.51 7.01 -2.38 -0.02 1.49 16 42 H 0.07 1.63 7.78 -2.38 -0.02 1.61 16 43 H 0.05 1.58 7.89 -2.39 -0.02 1.56 16 44 H 0.09 1.70 6.58 -2.39 -0.02 1.68 16 45 H 0.05 0.87 6.89 -2.39 -0.02 0.86 16 46 H 0.34 11.74 7.69 -89.69 -0.69 11.05 16 47 H 0.11 3.21 8.14 -2.39 -0.02 3.19 16 48 H 0.07 1.98 8.14 -2.39 -0.02 1.96 16 49 H 0.40 19.39 7.90 -92.70 -0.73 18.66 16 50 H 0.28 14.10 8.31 -92.71 -0.77 13.33 16 Total: -1.00 -78.26 395.07 0.18 -78.08 By element: Atomic # 1 Polarization: 39.37 SS G_CDS: -0.46 Total: 38.91 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: 5.90 Total: 14.83 kcal Atomic # 7 Polarization: -113.49 SS G_CDS: -7.19 Total: -120.69 kcal Atomic # 8 Polarization: -56.67 SS G_CDS: -0.10 Total: -56.77 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Total: -78.26 0.18 -78.08 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733543256.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.801 kcal (2) G-P(sol) polarization free energy of solvation -78.256 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.178 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.078 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.277 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds