Wall clock time and date at job start Tue Mar 31 2020 18:31:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09006 * 110.79886 * 2 1 4 4 C 1.54949 * 110.74120 * 236.71320 * 2 1 3 5 5 N 1.48116 * 103.25407 * 279.03779 * 4 2 1 6 6 C 1.34775 * 127.03277 * 140.73797 * 5 4 2 7 7 O 1.21283 * 119.99773 * 179.97438 * 6 5 4 8 8 C 1.50696 * 119.99968 * 359.96470 * 6 5 4 9 9 C 1.54634 * 111.03702 * 295.32550 * 8 6 5 10 10 C 1.51167 * 104.69801 * 217.36338 * 9 8 6 11 11 C 1.30533 * 111.11698 * 16.38236 * 10 9 8 12 12 C 1.51100 * 111.10322 * 0.03395 * 11 10 9 13 13 C 1.47489 * 105.93494 * 320.71184 * 5 4 2 14 14 C 1.54004 * 107.08319 * 25.44422 * 13 5 4 15 15 H 1.09005 * 110.32587 * 239.70786 * 14 13 5 16 16 C 1.52993 * 110.32821 * 117.59071 * 14 13 5 17 17 N 1.46905 * 109.47039 * 66.45316 * 16 14 13 18 18 C 1.46901 * 110.99870 * 180.02562 * 17 16 14 19 19 C 1.50697 * 109.46943 * 180.02562 * 18 17 16 20 20 O 1.21292 * 120.00024 * 359.97438 * 19 18 17 21 21 N 1.34776 * 119.99767 * 180.02562 * 19 18 17 22 22 C 1.37102 * 120.00095 * 179.97438 * 21 19 18 23 23 H 1.08004 * 119.99386 * 359.97438 * 22 21 19 24 24 C 1.38941 * 120.00393 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99786 * 0.02562 * 24 22 21 26 26 Si 1.86800 * 120.00292 * 179.97438 * 24 22 21 27 27 H 1.48498 * 109.47100 * 90.00207 * 26 24 22 28 28 H 1.48501 * 109.47251 * 210.00227 * 26 24 22 29 29 H 1.48503 * 109.46881 * 330.00341 * 26 24 22 30 30 H 1.08995 * 109.47581 * 296.70677 * 1 2 3 31 31 H 1.09005 * 109.47188 * 56.70532 * 1 2 3 32 32 H 1.09002 * 109.47154 * 176.70658 * 1 2 3 33 33 H 1.08995 * 110.66496 * 160.59704 * 4 2 1 34 34 H 1.09002 * 110.80252 * 37.54564 * 4 2 1 35 35 H 1.08998 * 110.91775 * 59.29834 * 8 6 5 36 36 H 1.08995 * 110.38412 * 336.14931 * 9 8 6 37 37 H 1.08998 * 110.38528 * 98.52478 * 9 8 6 38 38 H 1.07994 * 124.43578 * 196.40425 * 10 9 8 39 39 H 1.07998 * 124.44505 * 180.02562 * 11 10 9 40 40 H 1.09004 * 110.38416 * 224.74838 * 12 11 10 41 41 H 1.09000 * 110.38965 * 102.37414 * 12 11 10 42 42 H 1.09002 * 109.90578 * 266.08649 * 13 5 4 43 43 H 1.08992 * 110.07672 * 144.89494 * 13 5 4 44 44 H 1.09001 * 109.47393 * 306.45598 * 16 14 13 45 45 H 1.08998 * 109.47408 * 186.45243 * 16 14 13 46 46 H 1.00901 * 110.99869 * 56.04956 * 17 16 14 47 47 H 1.09004 * 109.47031 * 299.99620 * 18 17 16 48 48 H 1.08995 * 109.47111 * 59.99900 * 18 17 16 49 49 H 0.96997 * 120.00713 * 359.97438 * 21 19 18 50 50 H 0.97001 * 119.99428 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9170 1.0190 0.0000 4 6 2.0787 -0.7953 -1.2113 5 7 1.9872 -2.2038 -0.7624 6 6 1.6234 -3.2697 -1.5027 7 8 1.5927 -4.3738 -1.0018 8 6 1.2544 -3.0895 -2.9526 9 6 -0.0215 -2.2280 -3.0978 10 6 -0.7729 -2.8473 -4.2541 11 6 -0.3274 -4.0459 -4.5164 12 6 0.7947 -4.4266 -3.5788 13 6 2.3762 -2.2015 0.6602 14 6 2.0775 -0.7938 1.2086 15 1 2.9906 -0.3321 1.5844 16 6 1.0252 -0.8673 2.3168 17 7 1.5817 -1.5815 3.4738 18 6 0.5968 -1.6722 4.5599 19 6 1.2023 -2.4088 5.7268 20 8 2.3420 -2.8184 5.6601 21 7 0.4771 -2.6134 6.8443 22 6 1.0277 -3.2840 7.9057 23 1 2.0426 -3.6487 7.8462 24 6 0.2803 -3.4944 9.0579 25 7 -0.9547 -3.0511 9.1301 26 14 1.0304 -4.4088 10.5039 27 1 1.6957 -3.4395 11.4111 28 1 -0.0385 -5.1263 11.2442 29 1 2.0302 -5.3874 10.0059 30 1 -0.3634 0.4618 0.9180 31 1 -0.3634 0.5642 -0.8590 32 1 -0.3633 -1.0260 -0.0590 33 1 3.1145 -0.5225 -1.4132 34 1 1.4603 -0.6319 -2.0939 35 1 2.0833 -2.6590 -3.5145 36 1 -0.6185 -2.2772 -2.1872 37 1 0.2417 -1.1949 -3.3250 38 1 -1.5731 -2.3616 -4.7926 39 1 -0.7107 -4.6820 -5.3005 40 1 1.6125 -4.8875 -4.1327 41 1 0.4303 -5.1026 -2.8052 42 1 3.4403 -2.4185 0.7544 43 1 1.7961 -2.9441 1.2080 44 1 0.1473 -1.3989 1.9497 45 1 0.7406 0.1416 2.6152 46 1 2.4333 -1.1445 3.7930 47 1 0.3088 -0.6689 4.8740 48 1 -0.2838 -2.2095 4.2080 49 1 -0.4345 -2.2862 6.8976 50 1 -1.4766 -3.1984 9.9343 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733543258.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:31:32 Heat of formation + Delta-G solvation = -50.918888 kcal Electronic energy + Delta-G solvation = -29018.107895 eV Core-core repulsion = 25045.279246 eV Total energy + Delta-G solvation = -3972.828648 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.79962 -39.08281 -38.17247 -37.42409 -35.34104 -33.84868 -32.82878 -31.21728 -30.76999 -29.60800 -28.51475 -27.24555 -26.72535 -24.97827 -23.78650 -22.66185 -21.57164 -19.72990 -19.39542 -19.12296 -18.93038 -17.86035 -17.52200 -16.50189 -16.45157 -16.08108 -15.75707 -15.37982 -14.69187 -14.56057 -14.44251 -14.04953 -13.87188 -13.63203 -13.55068 -13.18202 -13.02816 -12.86951 -12.57781 -12.51878 -12.32738 -12.16866 -12.00706 -11.89996 -11.76349 -11.60961 -11.58311 -11.47746 -11.41173 -11.04331 -10.94618 -10.83967 -10.59460 -10.37209 -10.19304 -9.89524 -9.48490 -9.23757 -8.79939 -8.43647 -8.03364 -7.93273 -6.39381 -3.80042 1.90783 2.49224 2.78498 3.19759 3.28237 3.34769 3.93207 3.99565 4.09843 4.17299 4.21365 4.30360 4.38095 4.57705 4.70582 4.76921 4.91447 4.96041 5.04568 5.11763 5.16809 5.20450 5.24800 5.27463 5.29043 5.32042 5.42504 5.47624 5.53064 5.54271 5.62529 5.66103 5.72943 5.80737 5.82628 5.86988 5.93830 5.99864 6.02164 6.13243 6.17246 6.27667 6.30520 6.51648 7.21737 7.40687 7.57666 7.67536 8.04733 8.08949 8.63879 9.20439 9.56959 10.08508 10.78450 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.018247 B = 0.002075 C = 0.001996 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1534.123295 B =13489.018321 C =14022.899627 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.100 4.100 3 H 0.089 0.911 4 C 0.097 3.903 5 N -0.619 5.619 6 C 0.538 3.462 7 O -0.533 6.533 8 C -0.112 4.112 9 C -0.088 4.088 10 C -0.173 4.173 11 C -0.159 4.159 12 C -0.089 4.089 13 C 0.116 3.884 14 C -0.093 4.093 15 H 0.085 0.915 16 C 0.067 3.933 17 N -0.670 5.670 18 C 0.052 3.948 19 C 0.441 3.559 20 O -0.582 6.582 21 N -0.565 5.565 22 C -0.298 4.298 23 H 0.103 0.897 24 C 0.021 3.979 25 N -0.903 5.903 26 Si 0.930 3.070 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.269 1.269 30 H 0.064 0.936 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.073 0.927 34 H 0.084 0.916 35 H 0.103 0.897 36 H 0.080 0.920 37 H 0.078 0.922 38 H 0.127 0.873 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.096 0.904 42 H 0.065 0.935 43 H 0.093 0.907 44 H 0.075 0.925 45 H 0.031 0.969 46 H 0.348 0.652 47 H 0.043 0.957 48 H 0.085 0.915 49 H 0.392 0.608 50 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.093 9.515 -27.670 29.261 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.120 4.120 3 H 0.107 0.893 4 C -0.026 4.026 5 N -0.353 5.353 6 C 0.327 3.673 7 O -0.409 6.409 8 C -0.133 4.133 9 C -0.125 4.125 10 C -0.191 4.191 11 C -0.177 4.177 12 C -0.127 4.127 13 C -0.006 4.006 14 C -0.113 4.113 15 H 0.104 0.896 16 C -0.063 4.063 17 N -0.302 5.302 18 C -0.081 4.081 19 C 0.227 3.773 20 O -0.466 6.466 21 N -0.201 5.201 22 C -0.428 4.428 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.544 5.544 26 Si 0.757 3.243 27 H -0.205 1.205 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.083 0.917 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.091 0.909 34 H 0.102 0.898 35 H 0.121 0.879 36 H 0.099 0.901 37 H 0.096 0.904 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.093 0.907 41 H 0.114 0.886 42 H 0.084 0.916 43 H 0.111 0.889 44 H 0.093 0.907 45 H 0.049 0.951 46 H 0.168 0.832 47 H 0.061 0.939 48 H 0.103 0.897 49 H 0.225 0.775 50 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.543 7.888 -27.564 28.675 hybrid contribution -0.298 0.805 1.138 1.426 sum 0.245 8.693 -26.425 27.820 Atomic orbital electron populations 1.21857 0.94204 1.02256 1.02065 1.22278 0.96665 0.99004 0.94023 0.89269 1.22742 1.01173 0.80847 0.97824 1.48793 1.67138 1.07265 1.12083 1.19992 0.76522 0.83149 0.87672 1.90744 1.52901 1.24234 1.73049 1.22130 0.99344 0.98845 0.92994 1.21391 0.94157 0.98784 0.98186 1.23219 1.00662 0.97042 0.98153 1.23332 0.98274 0.97010 0.99073 1.21310 0.97080 0.96324 0.97939 1.22045 1.00684 0.97870 0.80032 1.22119 0.99282 0.95171 0.94704 0.89625 1.22121 0.97156 0.96161 0.90854 1.60057 1.07008 1.56495 1.06660 1.21649 0.95716 0.99017 0.91681 1.19814 0.87531 0.85826 0.84175 1.90524 1.18807 1.55125 1.82182 1.41866 1.15040 1.50392 1.12835 1.19705 0.99961 1.31320 0.91789 0.87929 1.25264 0.95514 0.98075 0.99176 1.69617 1.08618 1.46634 1.29537 0.85852 0.78466 0.79408 0.80537 1.20453 1.20929 1.19388 0.91734 0.92643 0.92258 0.90884 0.89757 0.87875 0.90126 0.90402 0.85553 0.85536 0.90668 0.88612 0.91632 0.88876 0.90651 0.95128 0.83234 0.93947 0.89697 0.77483 0.91909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 7.99 37.16 0.30 -0.73 16 2 C -0.10 -0.69 3.60 -88.74 -0.32 -1.01 16 3 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 4 C 0.10 0.66 6.28 -2.12 -0.01 0.64 16 5 N -0.62 -6.49 3.19 -169.76 -0.54 -7.04 16 6 C 0.54 6.59 7.15 -10.99 -0.08 6.52 16 7 O -0.53 -9.02 15.88 5.55 0.09 -8.93 16 8 C -0.11 -0.97 2.92 -90.05 -0.26 -1.23 16 9 C -0.09 -0.62 5.35 -26.80 -0.14 -0.77 16 10 C -0.17 -1.20 10.78 -35.67 -0.38 -1.58 16 11 C -0.16 -1.19 10.78 -35.70 -0.38 -1.57 16 12 C -0.09 -0.81 6.16 -26.83 -0.17 -0.98 16 13 C 0.12 1.41 6.45 -2.98 -0.02 1.39 16 14 C -0.09 -0.90 3.12 -89.25 -0.28 -1.18 16 15 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 16 C 0.07 0.77 3.60 -3.82 -0.01 0.76 16 17 N -0.67 -10.64 5.81 -115.06 -0.67 -11.31 16 18 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 19 C 0.44 10.60 7.82 -10.99 -0.09 10.51 16 20 O -0.58 -16.08 15.78 5.55 0.09 -15.99 16 21 N -0.56 -14.57 5.29 -10.96 -0.06 -14.63 16 22 C -0.30 -8.46 9.68 -14.93 -0.14 -8.61 16 23 H 0.10 3.06 7.16 -52.48 -0.38 2.68 16 24 C 0.02 0.57 5.50 -17.47 -0.10 0.48 16 25 N -0.90 -24.89 13.05 55.50 0.72 -24.17 16 26 Si 0.93 21.40 29.55 -169.99 -5.02 16.38 16 27 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 28 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 29 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 30 H 0.06 0.47 6.67 -51.93 -0.35 0.13 16 31 H 0.05 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.52 7.61 -51.93 -0.40 0.12 16 33 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 34 H 0.08 0.43 5.05 -51.93 -0.26 0.17 16 35 H 0.10 0.71 8.14 -51.93 -0.42 0.29 16 36 H 0.08 0.67 7.88 -51.93 -0.41 0.27 16 37 H 0.08 0.40 6.66 -51.93 -0.35 0.05 16 38 H 0.13 0.67 8.06 -52.49 -0.42 0.25 16 39 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 40 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 41 H 0.10 1.10 7.01 -51.93 -0.36 0.74 16 42 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 43 H 0.09 1.47 7.48 -51.93 -0.39 1.08 16 44 H 0.08 0.92 6.85 -51.93 -0.36 0.57 16 45 H 0.03 0.32 7.55 -51.93 -0.39 -0.07 16 46 H 0.35 5.63 8.43 -39.29 -0.33 5.30 16 47 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 48 H 0.08 1.43 8.14 -51.93 -0.42 1.01 16 49 H 0.39 9.66 7.90 -40.82 -0.32 9.33 16 50 H 0.27 7.07 8.31 -40.82 -0.34 6.73 16 LS Contribution 397.14 15.07 5.98 5.98 Total: -1.00 -34.16 397.14 -9.60 -43.77 By element: Atomic # 1 Polarization: 20.47 SS G_CDS: -8.07 Total: 12.40 kcal Atomic # 6 Polarization: 5.67 SS G_CDS: -2.12 Total: 3.54 kcal Atomic # 7 Polarization: -56.61 SS G_CDS: -0.54 Total: -57.15 kcal Atomic # 8 Polarization: -25.10 SS G_CDS: 0.18 Total: -24.92 kcal Atomic # 14 Polarization: 21.40 SS G_CDS: -5.02 Total: 16.38 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -34.16 -9.60 -43.77 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733543258.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.153 kcal (2) G-P(sol) polarization free energy of solvation -34.162 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.604 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.766 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.919 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds