Wall clock time and date at job start Tue Mar 31 2020 18:32:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47042 * 2 1 4 4 C 1.47201 * 109.47001 * 120.00165 * 2 1 3 5 5 C 2.64597 * 109.47177 * 120.00150 * 2 1 3 6 6 C 4.07796 * 109.47081 * 120.00137 * 2 1 3 7 7 O 1.21620 * 120.00133 * 122.22095 * 6 5 4 8 8 N 1.34778 * 120.00197 * 302.21712 * 6 5 4 9 9 C 1.48117 * 127.03210 * 359.95216 * 8 6 5 10 10 C 1.55114 * 103.31157 * 140.80290 * 9 8 6 11 11 H 1.09002 * 110.72637 * 278.97993 * 10 9 8 12 12 C 1.52996 * 110.83093 * 155.60122 * 10 9 8 13 13 C 1.54621 * 102.75855 * 37.26647 * 10 9 8 14 14 H 1.09001 * 110.32322 * 97.20664 * 13 10 9 15 15 C 1.53000 * 110.32607 * 219.31744 * 13 10 9 16 16 N 1.46901 * 109.46769 * 183.56580 * 15 13 10 17 17 C 1.46906 * 110.99793 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47183 * 180.02562 * 17 16 15 19 19 O 1.21298 * 119.99556 * 359.97438 * 18 17 16 20 20 N 1.34769 * 120.00297 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00235 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00174 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99846 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00223 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99870 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47330 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47483 * 120.00046 * 25 23 21 28 28 H 1.48508 * 109.47390 * 240.00363 * 25 23 21 29 29 C 1.47487 * 127.03500 * 180.02562 * 8 6 5 30 30 H 1.08996 * 109.47032 * 300.00134 * 1 2 3 31 31 H 1.08997 * 109.46953 * 59.99832 * 1 2 3 32 32 H 1.09003 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46953 * 240.00417 * 2 1 3 34 34 H 1.09004 * 109.47166 * 59.99806 * 3 2 1 35 35 H 1.08996 * 109.47435 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.47620 * 299.99932 * 3 2 1 37 37 H 1.08990 * 110.66795 * 259.18878 * 9 8 6 38 38 H 1.09001 * 110.65875 * 22.14542 * 9 8 6 39 39 H 1.08998 * 109.47508 * 306.62955 * 12 10 9 40 40 H 1.09007 * 109.47259 * 66.62820 * 12 10 9 41 41 H 1.09004 * 109.47448 * 186.62144 * 12 10 9 42 42 H 1.09002 * 109.47398 * 303.56875 * 15 13 10 43 43 H 1.09001 * 109.47194 * 63.57056 * 15 13 10 44 44 H 1.00898 * 110.99877 * 56.04956 * 16 15 13 45 45 H 1.08995 * 109.47087 * 299.99901 * 17 16 15 46 46 H 1.09002 * 109.46903 * 59.99922 * 17 16 15 47 47 H 0.97000 * 119.99683 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00238 * 179.97438 * 24 23 21 49 49 H 1.09003 * 109.91034 * 86.05213 * 29 8 6 50 50 H 1.08997 * 109.91552 * 324.77454 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4121 -1.2474 2.1604 6 6 2.8893 -1.9225 3.3296 7 8 3.9706 -2.4790 3.3117 8 7 2.1404 -1.9410 4.4500 9 6 0.8107 -1.3182 4.6446 10 6 0.0482 -2.3639 5.4997 11 1 -0.3446 -3.1634 4.8715 12 6 -1.0747 -1.6991 6.2983 13 6 1.1486 -2.9003 6.4443 14 1 1.1033 -2.3900 7.4064 15 6 0.9941 -4.4103 6.6367 16 7 1.9941 -4.8856 7.6022 17 6 1.8760 -6.3347 7.8121 18 6 2.9149 -6.7846 8.8067 19 8 3.6790 -5.9775 9.2925 20 7 2.9958 -8.0839 9.1555 21 6 3.9414 -8.4932 10.0600 22 1 4.6217 -7.7746 10.4926 23 6 4.0244 -9.8327 10.4200 24 7 3.1970 -10.7072 9.8933 25 14 5.3132 -10.3906 11.6517 26 1 6.1162 -9.2215 12.0918 27 1 4.6426 -11.0018 12.8273 28 1 6.2059 -11.3921 11.0149 29 6 2.4779 -2.5844 5.7335 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 0.9026 -0.3757 5.1840 38 1 0.3140 -1.1648 3.6865 39 1 -0.6682 -0.8670 6.8732 40 1 -1.8378 -1.3291 5.6135 41 1 -1.5182 -2.4275 6.9772 42 1 -0.0057 -4.6284 7.0120 43 1 1.1421 -4.9152 5.6821 44 1 1.9192 -4.3861 8.4757 45 1 0.8823 -6.5666 8.1954 46 1 2.0302 -6.8527 6.8655 47 1 2.3856 -8.7295 8.7662 48 1 3.2552 -11.6424 10.1443 49 1 3.0732 -1.9053 6.3439 50 1 3.0305 -3.5063 5.5528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733547778.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:07 Heat of formation + Delta-G solvation = -30.531394 kcal Electronic energy + Delta-G solvation = -27835.509260 eV Core-core repulsion = 23863.564680 eV Total energy + Delta-G solvation = -3971.944580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.35431 -38.45364 -37.99148 -36.82066 -35.34962 -33.84481 -33.14096 -32.22231 -31.22262 -30.45762 -27.74305 -27.33806 -26.71304 -25.46973 -24.08121 -23.34411 -21.93858 -21.05221 -20.19204 -19.16687 -18.22555 -17.83677 -16.76164 -16.38902 -16.09609 -15.94833 -15.44499 -15.10918 -14.83979 -14.49158 -14.38044 -14.19253 -13.95495 -13.83423 -13.57875 -13.30609 -13.06238 -13.01337 -12.80148 -12.57424 -12.45048 -12.21526 -12.03516 -11.97888 -11.90952 -11.76670 -11.55991 -11.48407 -11.11424 -11.02259 -10.90711 -10.74989 -10.68688 -10.61119 -10.31843 -10.30708 -10.19598 -9.49194 -8.91598 -8.43824 -8.04305 -7.93053 -6.39159 -3.79795 1.34583 1.98268 2.71927 3.18668 3.29081 3.31275 3.36657 3.67420 3.93536 4.01234 4.19589 4.26193 4.38074 4.41783 4.56724 4.61531 4.69095 4.95219 5.00836 5.02952 5.06403 5.09353 5.11842 5.22427 5.24538 5.27520 5.29885 5.31241 5.38283 5.45913 5.54802 5.61534 5.64485 5.66414 5.69205 5.79005 5.84132 5.86741 5.91387 6.00985 6.06870 6.23079 6.29694 6.93784 7.20258 7.24476 7.58131 7.66922 7.89257 8.09456 8.64123 9.20812 9.57317 10.08781 10.78712 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.001799 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.536425 B =15559.211878 C =16238.101372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.009 3.991 3 C -0.146 4.146 4 C -0.082 4.082 5 C -0.213 4.213 6 C 0.647 3.353 7 O -0.518 6.518 8 N -0.613 5.613 9 C 0.104 3.896 10 C -0.101 4.101 11 H 0.086 0.914 12 C -0.141 4.141 13 C -0.093 4.093 14 H 0.089 0.911 15 C 0.067 3.933 16 N -0.669 5.669 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.021 3.979 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.118 3.882 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.061 0.939 33 H 0.101 0.899 34 H 0.061 0.939 35 H 0.062 0.938 36 H 0.070 0.930 37 H 0.076 0.924 38 H 0.079 0.921 39 H 0.059 0.941 40 H 0.058 0.942 41 H 0.062 0.938 42 H 0.031 0.969 43 H 0.072 0.928 44 H 0.349 0.651 45 H 0.043 0.957 46 H 0.085 0.915 47 H 0.392 0.608 48 H 0.271 0.729 49 H 0.071 0.929 50 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.859 22.610 -17.808 31.944 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.009 4.009 3 C -0.203 4.203 4 C -0.084 4.084 5 C -0.216 4.216 6 C 0.435 3.565 7 O -0.394 6.394 8 N -0.346 5.346 9 C -0.019 4.019 10 C -0.121 4.121 11 H 0.104 0.896 12 C -0.199 4.199 13 C -0.112 4.112 14 H 0.108 0.892 15 C -0.063 4.063 16 N -0.301 5.301 17 C -0.081 4.081 18 C 0.227 3.773 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.757 3.243 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.003 4.003 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.081 0.919 33 H 0.119 0.881 34 H 0.080 0.920 35 H 0.081 0.919 36 H 0.089 0.911 37 H 0.095 0.905 38 H 0.097 0.903 39 H 0.078 0.922 40 H 0.077 0.923 41 H 0.081 0.919 42 H 0.050 0.950 43 H 0.091 0.909 44 H 0.169 0.831 45 H 0.061 0.939 46 H 0.104 0.896 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.090 0.910 50 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -12.184 22.572 -17.972 31.320 hybrid contribution -0.609 -0.937 0.888 1.428 sum -12.793 21.635 -17.084 30.390 Atomic orbital electron populations 1.21848 0.92760 1.02838 1.02869 1.18502 0.96239 0.95257 0.90945 1.21840 1.01887 0.93758 1.02844 1.22583 0.96751 0.94142 0.94926 1.20632 1.01973 1.02242 0.96728 1.14222 0.83379 0.79391 0.79459 1.90911 1.20685 1.44817 1.83029 1.48602 1.19998 1.54063 1.11932 1.22683 0.82557 0.96293 1.00347 1.22348 0.95141 0.97819 0.96803 0.89587 1.21744 0.97456 1.00792 0.99886 1.22194 0.93599 0.96440 0.99007 0.89224 1.22032 0.93281 0.93482 0.97459 1.60050 1.50408 1.03690 1.15978 1.21658 0.97333 0.89277 0.99839 1.19810 0.87822 0.83501 0.86203 1.90526 1.45188 1.52964 1.57949 1.41868 1.32251 1.06594 1.39417 1.19764 1.11403 0.93175 1.18450 0.87851 1.25260 0.98358 0.95622 0.98751 1.69621 1.37538 1.03201 1.44014 0.85800 0.80111 0.78746 0.79678 1.19211 1.20804 1.20753 1.22145 0.96963 0.99311 0.81926 0.91960 0.91142 0.91943 0.88149 0.91972 0.91896 0.91115 0.90533 0.90294 0.92154 0.92340 0.91850 0.95046 0.90924 0.83143 0.93905 0.89637 0.77485 0.91962 0.91024 0.88517 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.59 9.15 37.16 0.34 -0.25 16 2 C 0.01 0.05 3.30 -93.41 -0.31 -0.26 16 3 C -0.15 -0.66 9.15 37.15 0.34 -0.32 16 4 C -0.08 -0.76 12.56 -37.12 -0.47 -1.23 16 5 C -0.21 -2.56 12.43 -38.84 -0.48 -3.04 16 6 C 0.65 9.35 7.73 -14.33 -0.11 9.24 16 7 O -0.52 -9.68 17.42 5.26 0.09 -9.59 16 8 N -0.61 -7.26 3.29 -172.51 -0.57 -7.83 16 9 C 0.10 0.83 6.38 -2.03 -0.01 0.82 16 10 C -0.10 -0.76 3.22 -88.65 -0.29 -1.05 16 11 H 0.09 0.67 7.86 -51.93 -0.41 0.26 16 12 C -0.14 -0.81 9.17 37.16 0.34 -0.47 16 13 C -0.09 -0.91 2.75 -89.24 -0.25 -1.16 16 14 H 0.09 0.82 7.85 -51.93 -0.41 0.41 16 15 C 0.07 0.79 4.74 -3.82 -0.02 0.77 16 16 N -0.67 -10.58 5.88 -115.05 -0.68 -11.25 16 17 C 0.05 0.92 6.17 -4.97 -0.03 0.89 16 18 C 0.44 10.57 7.82 -10.99 -0.09 10.49 16 19 O -0.58 -16.02 15.78 5.54 0.09 -15.94 16 20 N -0.56 -14.56 5.29 -10.96 -0.06 -14.61 16 21 C -0.30 -8.47 9.68 -14.93 -0.14 -8.61 16 22 H 0.10 3.08 7.16 -52.49 -0.38 2.71 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.88 13.05 55.50 0.72 -24.16 16 25 Si 0.93 21.39 29.55 -169.99 -5.02 16.37 16 26 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 27 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.40 7.11 56.52 0.40 -5.99 16 29 C 0.12 1.47 6.47 -2.97 -0.02 1.45 16 30 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 31 H 0.07 0.18 8.14 -51.93 -0.42 -0.25 16 32 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 33 H 0.10 0.46 8.14 -51.93 -0.42 0.04 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 36 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 37 H 0.08 0.53 8.02 -51.93 -0.42 0.11 16 38 H 0.08 0.56 7.40 -51.93 -0.38 0.17 16 39 H 0.06 0.33 8.10 -51.93 -0.42 -0.10 16 40 H 0.06 0.27 8.14 -51.92 -0.42 -0.15 16 41 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 42 H 0.03 0.33 8.14 -51.93 -0.42 -0.09 16 43 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 44 H 0.35 5.58 8.43 -39.29 -0.33 5.25 16 45 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 46 H 0.09 1.44 8.14 -51.93 -0.42 1.02 16 47 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.07 0.89 8.14 -51.93 -0.42 0.46 16 50 H 0.10 1.51 7.52 -51.93 -0.39 1.11 16 LS Contribution 420.33 15.07 6.33 6.33 Total: -1.00 -34.84 420.33 -8.88 -43.73 By element: Atomic # 1 Polarization: 17.70 SS G_CDS: -8.51 Total: 9.19 kcal Atomic # 6 Polarization: 9.05 SS G_CDS: -1.29 Total: 7.77 kcal Atomic # 7 Polarization: -57.27 SS G_CDS: -0.58 Total: -57.85 kcal Atomic # 8 Polarization: -25.71 SS G_CDS: 0.18 Total: -25.53 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.02 Total: 16.37 kcal Total LS contribution 6.33 Total: 6.33 kcal Total: -34.84 -8.88 -43.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733547778.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.198 kcal (2) G-P(sol) polarization free energy of solvation -34.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.647 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.729 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds