Wall clock time and date at job start Tue Mar 31 2020 18:32:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.47042 * 2 1 4 4 C 1.47201 * 109.47001 * 120.00165 * 2 1 3 5 5 C 2.64597 * 109.47177 * 120.00150 * 2 1 3 6 6 C 4.07796 * 109.47081 * 120.00137 * 2 1 3 7 7 O 1.21620 * 120.00133 * 122.22095 * 6 5 4 8 8 N 1.34778 * 120.00197 * 302.21712 * 6 5 4 9 9 C 1.48117 * 127.03210 * 359.95216 * 8 6 5 10 10 C 1.55114 * 103.31157 * 140.80290 * 9 8 6 11 11 H 1.09002 * 110.72637 * 278.97993 * 10 9 8 12 12 C 1.52996 * 110.83093 * 155.60122 * 10 9 8 13 13 C 1.54621 * 102.75855 * 37.26647 * 10 9 8 14 14 H 1.09001 * 110.32322 * 97.20664 * 13 10 9 15 15 C 1.53000 * 110.32607 * 219.31744 * 13 10 9 16 16 N 1.46901 * 109.46769 * 183.56580 * 15 13 10 17 17 C 1.46906 * 110.99793 * 180.02562 * 16 15 13 18 18 C 1.50700 * 109.47183 * 180.02562 * 17 16 15 19 19 O 1.21298 * 119.99556 * 359.97438 * 18 17 16 20 20 N 1.34769 * 120.00297 * 180.02562 * 18 17 16 21 21 C 1.37100 * 120.00235 * 179.97438 * 20 18 17 22 22 H 1.08000 * 120.00174 * 359.97438 * 21 20 18 23 23 C 1.38950 * 119.99846 * 179.97438 * 21 20 18 24 24 N 1.31411 * 120.00223 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 119.99870 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47330 * 359.97438 * 25 23 21 27 27 H 1.48503 * 109.47483 * 120.00046 * 25 23 21 28 28 H 1.48508 * 109.47390 * 240.00363 * 25 23 21 29 29 C 1.47487 * 127.03500 * 180.02562 * 8 6 5 30 30 H 1.08996 * 109.47032 * 300.00134 * 1 2 3 31 31 H 1.08997 * 109.46953 * 59.99832 * 1 2 3 32 32 H 1.09003 * 109.46883 * 179.97438 * 1 2 3 33 33 H 1.08996 * 109.46953 * 240.00417 * 2 1 3 34 34 H 1.09004 * 109.47166 * 59.99806 * 3 2 1 35 35 H 1.08996 * 109.47435 * 180.02562 * 3 2 1 36 36 H 1.09006 * 109.47620 * 299.99932 * 3 2 1 37 37 H 1.08990 * 110.66795 * 259.18878 * 9 8 6 38 38 H 1.09001 * 110.65875 * 22.14542 * 9 8 6 39 39 H 1.08998 * 109.47508 * 306.62955 * 12 10 9 40 40 H 1.09007 * 109.47259 * 66.62820 * 12 10 9 41 41 H 1.09004 * 109.47448 * 186.62144 * 12 10 9 42 42 H 1.09002 * 109.47398 * 303.56875 * 15 13 10 43 43 H 1.09001 * 109.47194 * 63.57056 * 15 13 10 44 44 H 1.00898 * 110.99877 * 56.04956 * 16 15 13 45 45 H 1.08995 * 109.47087 * 299.99901 * 17 16 15 46 46 H 1.09002 * 109.46903 * 59.99922 * 17 16 15 47 47 H 0.97000 * 119.99683 * 0.02562 * 20 18 17 48 48 H 0.97003 * 120.00238 * 179.97438 * 24 23 21 49 49 H 1.09003 * 109.91034 * 86.05213 * 29 8 6 50 50 H 1.08997 * 109.91552 * 324.77454 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0207 -0.6940 1.2019 5 6 2.4121 -1.2474 2.1604 6 6 2.8893 -1.9225 3.3296 7 8 3.9706 -2.4790 3.3117 8 7 2.1404 -1.9410 4.4500 9 6 0.8107 -1.3182 4.6446 10 6 0.0482 -2.3639 5.4997 11 1 -0.3446 -3.1634 4.8715 12 6 -1.0747 -1.6991 6.2983 13 6 1.1486 -2.9003 6.4443 14 1 1.1033 -2.3900 7.4064 15 6 0.9941 -4.4103 6.6367 16 7 1.9941 -4.8856 7.6022 17 6 1.8760 -6.3347 7.8121 18 6 2.9149 -6.7846 8.8067 19 8 3.6790 -5.9775 9.2925 20 7 2.9958 -8.0839 9.1555 21 6 3.9414 -8.4932 10.0600 22 1 4.6217 -7.7746 10.4926 23 6 4.0244 -9.8327 10.4200 24 7 3.1970 -10.7072 9.8933 25 14 5.3132 -10.3906 11.6517 26 1 6.1162 -9.2215 12.0918 27 1 4.6426 -11.0018 12.8273 28 1 6.2059 -11.3921 11.0149 29 6 2.4779 -2.5844 5.7335 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 0.8900 35 1 3.1300 1.4425 -0.0005 36 1 1.6767 1.9564 -0.8900 37 1 0.9026 -0.3757 5.1840 38 1 0.3140 -1.1648 3.6865 39 1 -0.6682 -0.8670 6.8732 40 1 -1.8378 -1.3291 5.6135 41 1 -1.5182 -2.4275 6.9772 42 1 -0.0057 -4.6284 7.0120 43 1 1.1421 -4.9152 5.6821 44 1 1.9192 -4.3861 8.4757 45 1 0.8823 -6.5666 8.1954 46 1 2.0302 -6.8527 6.8655 47 1 2.3856 -8.7295 8.7662 48 1 3.2552 -11.6424 10.1443 49 1 3.0732 -1.9053 6.3439 50 1 3.0305 -3.5063 5.5528 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733547778.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:06 Heat of formation + Delta-G solvation = -54.921798 kcal Electronic energy + Delta-G solvation = -27836.566908 eV Core-core repulsion = 23863.564680 eV Total energy + Delta-G solvation = -3973.002227 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.31923 -40.16775 -39.20575 -37.35428 -36.67846 -35.82748 -34.07089 -33.27679 -32.94421 -31.46570 -28.69373 -28.04940 -27.48532 -26.87444 -25.48511 -24.26244 -22.75815 -21.78270 -21.30594 -20.78452 -19.91057 -19.10189 -17.89411 -17.64764 -17.12721 -16.92310 -16.79148 -16.44140 -15.97819 -15.69594 -15.55372 -15.38347 -15.16698 -15.00348 -14.44488 -14.29063 -14.20440 -13.87991 -13.69200 -13.52652 -13.23621 -13.19566 -13.07629 -12.93645 -12.89501 -12.73318 -12.55494 -12.44239 -12.42129 -12.33510 -12.12710 -11.86900 -11.68363 -11.57710 -11.54267 -11.52432 -11.36872 -11.17265 -10.36037 -10.02738 -9.90751 -9.30958 -8.48122 -5.96950 0.41231 1.15720 1.35535 1.40694 1.55169 1.81758 2.03852 2.28142 2.36715 2.86914 2.95606 3.19091 3.42552 3.49487 3.62747 3.82185 4.03823 4.08912 4.15577 4.17264 4.26553 4.34956 4.41444 4.45156 4.47943 4.51037 4.54008 4.58992 4.66608 4.75968 4.80638 4.84265 4.92670 4.93157 4.96107 5.01305 5.11536 5.12789 5.18156 5.32272 5.33747 5.36493 5.39841 5.50938 5.86983 6.08649 6.13857 6.28117 6.43788 6.58731 6.83695 7.11332 7.54770 8.10230 8.69550 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.020204 B = 0.001799 C = 0.001724 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.536425 B =15559.211878 C =16238.101372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.003 3.997 3 C -0.145 4.145 4 C -0.038 4.038 5 C -0.269 4.269 6 C 0.640 3.360 7 O -0.581 6.581 8 N -0.609 5.609 9 C 0.102 3.898 10 C -0.089 4.089 11 H 0.087 0.913 12 C -0.136 4.136 13 C -0.084 4.084 14 H 0.103 0.897 15 C 0.072 3.928 16 N -0.686 5.686 17 C 0.067 3.933 18 C 0.437 3.563 19 O -0.623 6.623 20 N -0.574 5.574 21 C -0.335 4.335 22 H 0.078 0.922 23 C -0.013 4.013 24 N -0.920 5.920 25 Si 0.994 3.006 26 H -0.274 1.274 27 H -0.268 1.268 28 H -0.272 1.272 29 C 0.116 3.884 30 H 0.063 0.937 31 H 0.092 0.908 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.060 0.940 35 H 0.052 0.948 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.065 0.935 40 H 0.074 0.926 41 H 0.064 0.936 42 H 0.056 0.944 43 H 0.064 0.936 44 H 0.348 0.652 45 H 0.072 0.928 46 H 0.096 0.904 47 H 0.396 0.604 48 H 0.278 0.722 49 H 0.067 0.933 50 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.614 23.943 -18.874 34.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.015 4.015 3 C -0.202 4.202 4 C -0.040 4.040 5 C -0.272 4.272 6 C 0.431 3.569 7 O -0.463 6.463 8 N -0.340 5.340 9 C -0.019 4.019 10 C -0.109 4.109 11 H 0.105 0.895 12 C -0.193 4.193 13 C -0.103 4.103 14 H 0.121 0.879 15 C -0.057 4.057 16 N -0.319 5.319 17 C -0.065 4.065 18 C 0.224 3.776 19 O -0.509 6.509 20 N -0.211 5.211 21 C -0.465 4.465 22 H 0.096 0.904 23 C -0.213 4.213 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.199 1.199 27 H -0.193 1.193 28 H -0.197 1.197 29 C -0.006 4.006 30 H 0.082 0.918 31 H 0.111 0.889 32 H 0.077 0.923 33 H 0.134 0.866 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.113 0.887 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.084 0.916 40 H 0.093 0.907 41 H 0.083 0.917 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.167 0.833 45 H 0.089 0.911 46 H 0.114 0.886 47 H 0.230 0.770 48 H 0.087 0.913 49 H 0.085 0.915 50 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -15.018 23.916 -19.044 34.062 hybrid contribution 0.206 -1.266 1.130 1.710 sum -14.812 22.650 -17.914 32.455 Atomic orbital electron populations 1.21858 0.91043 1.02995 1.04113 1.18895 0.97561 0.95621 0.89394 1.21858 1.01284 0.92967 1.04060 1.23465 0.94346 0.91909 0.94285 1.20354 1.04657 1.04557 0.97621 1.14605 0.82831 0.78846 0.80624 1.90854 1.23360 1.47786 1.84270 1.48707 1.21064 1.53280 1.10967 1.22968 0.80490 0.96882 1.01549 1.22317 0.94774 0.97660 0.96167 0.89474 1.21725 0.96842 1.00823 0.99959 1.22162 0.92904 0.95425 0.99813 0.87925 1.22069 0.93295 0.94399 0.95942 1.60019 1.52812 1.02545 1.16559 1.21494 0.96199 0.90619 0.98234 1.20911 0.88105 0.82483 0.86067 1.90493 1.47059 1.53853 1.59517 1.41937 1.32172 1.07484 1.39501 1.19717 1.12716 0.93616 1.20411 0.90385 1.26047 1.00069 0.95091 1.00061 1.69677 1.38268 1.03644 1.44519 0.84862 0.77653 0.78016 0.77726 1.19889 1.19310 1.19720 1.22094 0.98369 0.97582 0.82597 0.91768 0.88922 0.92345 0.86635 0.92057 0.92924 0.88653 0.88781 0.88847 0.91553 0.90705 0.91714 0.92562 0.91735 0.83314 0.91071 0.88585 0.76981 0.91281 0.91499 0.92367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.70 9.15 71.98 0.66 -0.04 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.14 -0.93 9.15 71.98 0.66 -0.28 16 4 C -0.04 -0.66 12.56 31.13 0.39 -0.27 16 5 C -0.27 -6.62 12.43 30.02 0.37 -6.24 16 6 C 0.64 19.79 7.73 85.49 0.66 20.45 16 7 O -0.58 -23.80 17.42 -4.09 -0.07 -23.87 16 8 N -0.61 -14.91 3.29 -817.96 -2.69 -17.61 16 9 C 0.10 1.48 6.38 86.79 0.55 2.03 16 10 C -0.09 -1.14 3.22 -9.52 -0.03 -1.17 16 11 H 0.09 1.14 7.86 -2.39 -0.02 1.12 16 12 C -0.14 -1.08 9.17 71.98 0.66 -0.42 16 13 C -0.08 -1.56 2.75 -9.90 -0.03 -1.59 16 14 H 0.10 1.70 7.85 -2.39 -0.02 1.68 16 15 C 0.07 1.60 4.74 86.30 0.41 2.01 16 16 N -0.69 -21.68 5.88 -517.91 -3.05 -24.73 16 17 C 0.07 2.35 6.17 85.56 0.53 2.88 16 18 C 0.44 21.43 7.82 87.66 0.69 22.12 16 19 O -0.62 -35.55 15.78 -3.08 -0.05 -35.60 16 20 N -0.57 -30.30 5.29 -306.99 -1.62 -31.92 16 21 C -0.34 -19.56 9.68 84.04 0.81 -18.75 16 22 H 0.08 4.87 7.16 -2.91 -0.02 4.85 16 23 C -0.01 -0.71 5.50 84.93 0.47 -0.24 16 24 N -0.92 -50.55 13.05 21.66 0.28 -50.27 16 25 Si 0.99 43.96 29.55 68.60 2.03 45.99 16 26 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 27 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 28 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 29 C 0.12 3.02 6.47 86.53 0.56 3.58 16 30 H 0.06 0.31 8.14 -2.39 -0.02 0.29 16 31 H 0.09 0.09 8.14 -2.39 -0.02 0.07 16 32 H 0.06 0.36 8.14 -2.39 -0.02 0.34 16 33 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 34 H 0.06 0.42 8.14 -2.38 -0.02 0.40 16 35 H 0.05 0.46 8.14 -2.39 -0.02 0.44 16 36 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 37 H 0.09 1.07 8.02 -2.39 -0.02 1.05 16 38 H 0.09 1.12 7.40 -2.39 -0.02 1.10 16 39 H 0.07 0.48 8.10 -2.39 -0.02 0.46 16 40 H 0.07 0.40 8.14 -2.38 -0.02 0.38 16 41 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 42 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 43 H 0.06 1.56 8.14 -2.39 -0.02 1.54 16 44 H 0.35 11.10 8.43 -89.70 -0.76 10.35 16 45 H 0.07 2.12 8.14 -2.39 -0.02 2.10 16 46 H 0.10 3.19 8.14 -2.39 -0.02 3.17 16 47 H 0.40 19.82 7.90 -92.71 -0.73 19.09 16 48 H 0.28 14.22 8.31 -92.71 -0.77 13.45 16 49 H 0.07 1.77 8.14 -2.39 -0.02 1.75 16 50 H 0.06 1.98 7.52 -2.39 -0.02 1.96 16 Total: -1.00 -80.51 420.33 1.61 -78.90 By element: Atomic # 1 Polarization: 35.59 SS G_CDS: -0.54 Total: 35.05 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 7.32 Total: 24.05 kcal Atomic # 7 Polarization: -117.44 SS G_CDS: -7.08 Total: -124.52 kcal Atomic # 8 Polarization: -59.35 SS G_CDS: -0.12 Total: -59.47 kcal Atomic # 14 Polarization: 43.96 SS G_CDS: 2.03 Total: 45.99 kcal Total: -80.51 1.61 -78.90 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733547778.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.979 kcal (2) G-P(sol) polarization free energy of solvation -80.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.527 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.900 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.922 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds