Wall clock time and date at job start Tue Mar 31 2020 18:32:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 C 1.47199 * 109.47289 * 119.99918 * 2 1 3 5 5 C 2.64594 * 109.47084 * 119.99941 * 2 1 3 6 6 C 4.07804 * 109.47102 * 119.99935 * 2 1 3 7 7 O 1.21610 * 119.99736 * 171.49835 * 6 5 4 8 8 N 1.34776 * 119.99973 * 351.49274 * 6 5 4 9 9 C 1.48148 * 127.83663 * 0.03157 * 8 6 5 10 10 C 1.54385 * 104.61857 * 140.41458 * 9 8 6 11 11 H 1.09003 * 110.43296 * 264.94964 * 10 9 8 12 12 C 1.52999 * 110.34276 * 142.73145 * 10 9 8 13 13 C 1.54294 * 104.95870 * 23.86577 * 10 9 8 14 14 H 1.09007 * 110.33963 * 241.02333 * 13 10 9 15 15 C 1.53000 * 110.34099 * 118.87129 * 13 10 9 16 16 N 1.46901 * 109.46855 * 176.47126 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47350 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46893 * 120.00104 * 25 23 21 28 28 H 1.48493 * 109.47057 * 240.00163 * 25 23 21 29 29 C 1.48307 * 127.76856 * 179.97438 * 8 6 5 30 30 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47001 * 300.00217 * 1 2 3 32 32 H 1.09000 * 109.47115 * 59.99911 * 1 2 3 33 33 H 1.08998 * 109.47001 * 239.99783 * 2 1 3 34 34 H 1.08998 * 109.46881 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47264 * 299.99997 * 3 2 1 36 36 H 1.08998 * 109.47426 * 60.00043 * 3 2 1 37 37 H 1.08999 * 110.40950 * 21.62706 * 9 8 6 38 38 H 1.08997 * 110.40546 * 259.20034 * 9 8 6 39 39 H 1.08993 * 109.47786 * 304.46644 * 12 10 9 40 40 H 1.09004 * 109.47005 * 64.47039 * 12 10 9 41 41 H 1.09002 * 109.46994 * 184.46214 * 12 10 9 42 42 H 1.08998 * 109.47488 * 56.47328 * 15 13 10 43 43 H 1.08993 * 109.47041 * 296.46955 * 15 13 10 44 44 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 45 45 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 46 46 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 47 47 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.38133 * 100.79613 * 29 8 6 50 50 H 1.08995 * 110.50913 * 338.30906 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1604 6 6 2.8894 -1.9224 3.3297 7 8 4.0159 -1.7114 3.7363 8 7 2.0901 -2.7914 3.9796 9 6 0.7004 -3.1765 3.6401 10 6 0.6384 -4.6944 3.9155 11 1 0.8226 -5.2552 2.9992 12 6 -0.7216 -5.0728 4.5054 13 6 1.7603 -4.9592 4.9411 14 1 2.4955 -5.6502 4.5285 15 6 1.1736 -5.5202 6.2381 16 7 2.2633 -5.8441 7.1685 17 6 1.7365 -6.3861 8.4281 18 6 2.8809 -6.7052 9.3552 19 8 4.0229 -6.5007 9.0018 20 7 2.6351 -7.2168 10.5777 21 6 3.6763 -7.5075 11.4210 22 1 4.6931 -7.3262 11.1060 23 6 3.4226 -8.0297 12.6835 24 7 2.1849 -8.2452 13.0689 25 14 4.8411 -8.4251 13.8328 26 1 6.1258 -8.0930 13.1661 27 1 4.7082 -7.6249 15.0767 28 1 4.8170 -9.8712 14.1695 29 6 2.4042 -3.5792 5.1963 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.4953 -2.9722 2.5893 38 1 -0.0074 -2.6455 4.2766 39 1 -0.9088 -4.4770 5.3987 40 1 -1.5029 -4.8803 3.7700 41 1 -0.7222 -6.1308 4.7676 42 1 0.6033 -6.4227 6.0183 43 1 0.5177 -4.7772 6.6914 44 1 2.8459 -5.0378 7.3377 45 1 1.1698 -7.2945 8.2238 46 1 1.0846 -5.6487 8.8964 47 1 1.7217 -7.3799 10.8605 48 1 2.0080 -8.6100 13.9501 49 1 1.9632 -3.1107 6.0762 50 1 3.4827 -3.6797 5.3183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001733547780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:13 Heat of formation + Delta-G solvation = -25.604254 kcal Electronic energy + Delta-G solvation = -27802.695543 eV Core-core repulsion = 23830.964620 eV Total energy + Delta-G solvation = -3971.730923 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.47661 -38.60161 -38.05465 -36.85506 -35.35577 -33.88449 -33.18642 -32.27992 -31.22243 -30.29803 -27.76150 -27.55324 -26.63513 -25.34459 -24.24802 -23.36813 -22.60213 -21.16050 -19.50455 -19.03795 -18.29430 -17.82795 -16.90915 -16.54900 -16.17246 -15.75593 -15.68875 -15.13274 -15.00526 -14.54618 -14.52645 -14.10451 -14.05886 -14.03485 -13.71930 -13.31346 -12.85316 -12.81867 -12.69724 -12.58440 -12.41257 -12.36947 -12.23155 -11.98316 -11.96532 -11.91942 -11.55786 -11.47433 -11.05060 -10.99346 -10.87179 -10.71466 -10.64256 -10.60202 -10.39758 -10.32497 -10.20530 -9.50220 -9.07408 -8.44840 -8.05073 -7.94075 -6.40309 -3.80841 1.28194 1.90936 2.61993 3.17993 3.24612 3.28540 3.36269 3.61862 3.92555 4.03332 4.19474 4.24157 4.39179 4.43681 4.51711 4.52713 4.66482 4.89552 4.93155 5.04367 5.05088 5.08899 5.12324 5.18406 5.22690 5.25559 5.27263 5.29820 5.40216 5.42412 5.46839 5.51280 5.61080 5.62143 5.65812 5.78176 5.79115 5.85729 5.90331 5.99430 6.00108 6.18119 6.28374 6.88362 7.16242 7.20889 7.57309 7.64459 7.79531 8.08554 8.63122 9.19938 9.56166 10.07754 10.77547 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.001724 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.797651 B =16240.452332 C =17079.474001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.008 3.992 3 C -0.148 4.148 4 C -0.078 4.078 5 C -0.215 4.215 6 C 0.651 3.349 7 O -0.520 6.520 8 N -0.614 5.614 9 C 0.105 3.895 10 C -0.100 4.100 11 H 0.084 0.916 12 C -0.148 4.148 13 C -0.096 4.096 14 H 0.095 0.905 15 C 0.067 3.933 16 N -0.671 5.671 17 C 0.051 3.949 18 C 0.440 3.560 19 O -0.582 6.582 20 N -0.565 5.565 21 C -0.298 4.298 22 H 0.104 0.896 23 C 0.022 3.978 24 N -0.902 5.902 25 Si 0.929 3.071 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 C 0.109 3.891 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.063 0.937 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.062 0.938 40 H 0.055 0.945 41 H 0.068 0.932 42 H 0.080 0.920 43 H 0.032 0.968 44 H 0.348 0.652 45 H 0.086 0.914 46 H 0.043 0.957 47 H 0.392 0.608 48 H 0.270 0.730 49 H 0.075 0.925 50 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.372 13.886 -25.763 31.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.009 4.009 3 C -0.205 4.205 4 C -0.080 4.080 5 C -0.218 4.218 6 C 0.440 3.560 7 O -0.397 6.397 8 N -0.347 5.347 9 C -0.018 4.018 10 C -0.120 4.120 11 H 0.102 0.898 12 C -0.205 4.205 13 C -0.116 4.116 14 H 0.114 0.886 15 C -0.063 4.063 16 N -0.304 5.304 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.466 6.466 20 N -0.201 5.201 21 C -0.428 4.428 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.544 5.544 25 Si 0.756 3.244 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 C -0.013 4.013 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.089 0.911 33 H 0.120 0.880 34 H 0.082 0.918 35 H 0.089 0.911 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.095 0.905 39 H 0.081 0.919 40 H 0.074 0.926 41 H 0.087 0.913 42 H 0.099 0.901 43 H 0.050 0.950 44 H 0.168 0.832 45 H 0.104 0.896 46 H 0.061 0.939 47 H 0.225 0.775 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -10.858 13.520 -25.894 31.163 hybrid contribution -0.373 0.397 1.283 1.393 sum -11.230 13.917 -24.611 30.422 Atomic orbital electron populations 1.21850 0.92721 1.02813 1.02945 1.18517 0.96264 0.95344 0.90822 1.21854 1.01954 0.93795 1.02871 1.22607 0.96922 0.94755 0.93766 1.20575 1.01931 1.02473 0.96831 1.14192 0.83609 0.78052 0.80123 1.90898 1.18328 1.63687 1.66775 1.48761 1.14944 1.42141 1.28857 1.22565 0.82722 0.95129 1.01412 1.22097 0.95802 0.94814 0.99238 0.89762 1.21928 0.95112 1.02504 1.01001 1.22184 0.97507 0.96219 0.95692 0.88649 1.22160 0.92951 0.99547 0.91598 1.60098 1.20031 1.37974 1.12303 1.21661 0.96344 1.00134 0.90003 1.19827 0.89905 0.84432 0.83276 1.90533 1.22555 1.57773 1.75693 1.41872 1.09830 1.55781 1.12657 1.19769 0.89542 1.38899 0.94588 0.87852 1.25257 0.97523 0.97352 0.97831 1.69622 1.18565 1.45196 1.21006 0.85801 0.81004 0.77948 0.79608 1.19203 1.20801 1.20753 1.22576 1.02782 0.89793 0.86116 0.91939 0.91949 0.91105 0.88000 0.91830 0.91124 0.91947 0.90357 0.90526 0.91892 0.92551 0.91336 0.90137 0.95002 0.83200 0.89571 0.93907 0.77487 0.91967 0.90731 0.88801 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.55 9.15 37.16 0.34 -0.21 16 2 C 0.01 0.04 3.30 -93.41 -0.31 -0.26 16 3 C -0.15 -0.68 9.15 37.16 0.34 -0.34 16 4 C -0.08 -0.70 12.56 -37.12 -0.47 -1.17 16 5 C -0.22 -2.49 12.50 -38.83 -0.49 -2.98 16 6 C 0.65 9.01 7.75 -14.33 -0.11 8.90 16 7 O -0.52 -9.25 17.35 5.27 0.09 -9.15 16 8 N -0.61 -6.97 3.32 -172.03 -0.57 -7.54 16 9 C 0.10 0.82 6.44 -2.41 -0.02 0.81 16 10 C -0.10 -0.75 3.66 -89.22 -0.33 -1.07 16 11 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 12 C -0.15 -0.92 7.94 37.16 0.29 -0.62 16 13 C -0.10 -0.97 3.30 -89.20 -0.29 -1.27 16 14 H 0.10 1.09 8.14 -51.93 -0.42 0.67 16 15 C 0.07 0.74 3.88 -3.82 -0.01 0.72 16 16 N -0.67 -10.51 6.13 -115.06 -0.71 -11.22 16 17 C 0.05 0.89 6.17 -4.98 -0.03 0.85 16 18 C 0.44 10.44 7.82 -10.99 -0.09 10.36 16 19 O -0.58 -16.01 15.78 5.55 0.09 -15.92 16 20 N -0.56 -14.38 5.29 -10.96 -0.06 -14.43 16 21 C -0.30 -8.41 9.68 -14.93 -0.14 -8.55 16 22 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 23 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 24 N -0.90 -24.63 13.05 55.50 0.72 -23.91 16 25 Si 0.93 21.26 29.55 -169.99 -5.02 16.23 16 26 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 28 H -0.28 -6.33 7.11 56.52 0.40 -5.93 16 29 C 0.11 1.26 5.82 -2.31 -0.01 1.24 16 30 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 31 H 0.06 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.07 0.16 8.14 -51.93 -0.42 -0.26 16 33 H 0.10 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 36 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 37 H 0.08 0.54 7.44 -51.93 -0.39 0.15 16 38 H 0.08 0.53 7.83 -51.93 -0.41 0.12 16 39 H 0.06 0.40 6.85 -51.93 -0.36 0.04 16 40 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 41 H 0.07 0.44 6.71 -51.93 -0.35 0.09 16 42 H 0.08 0.83 6.58 -51.93 -0.34 0.49 16 43 H 0.03 0.32 6.89 -51.93 -0.36 -0.04 16 44 H 0.35 5.76 7.68 -39.29 -0.30 5.45 16 45 H 0.09 1.36 8.14 -51.93 -0.42 0.94 16 46 H 0.04 0.66 8.14 -51.93 -0.42 0.24 16 47 H 0.39 9.49 7.90 -40.82 -0.32 9.16 16 48 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 49 H 0.07 0.82 7.78 -51.93 -0.40 0.42 16 50 H 0.09 1.28 7.88 -51.93 -0.41 0.87 16 LS Contribution 413.12 15.07 6.23 6.23 Total: -1.00 -34.63 413.12 -8.86 -43.50 By element: Atomic # 1 Polarization: 17.53 SS G_CDS: -8.22 Total: 9.31 kcal Atomic # 6 Polarization: 8.33 SS G_CDS: -1.42 Total: 6.91 kcal Atomic # 7 Polarization: -56.49 SS G_CDS: -0.61 Total: -57.10 kcal Atomic # 8 Polarization: -25.25 SS G_CDS: 0.18 Total: -25.07 kcal Atomic # 14 Polarization: 21.26 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 6.23 Total: 6.23 kcal Total: -34.63 -8.86 -43.50 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733547780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.893 kcal (2) G-P(sol) polarization free energy of solvation -34.633 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.865 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.498 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds