Wall clock time and date at job start Tue Mar 31 2020 18:32:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.46989 * 2 1 4 4 C 1.47199 * 109.47289 * 119.99918 * 2 1 3 5 5 C 2.64594 * 109.47084 * 119.99941 * 2 1 3 6 6 C 4.07804 * 109.47102 * 119.99935 * 2 1 3 7 7 O 1.21610 * 119.99736 * 171.49835 * 6 5 4 8 8 N 1.34776 * 119.99973 * 351.49274 * 6 5 4 9 9 C 1.48148 * 127.83663 * 0.03157 * 8 6 5 10 10 C 1.54385 * 104.61857 * 140.41458 * 9 8 6 11 11 H 1.09003 * 110.43296 * 264.94964 * 10 9 8 12 12 C 1.52999 * 110.34276 * 142.73145 * 10 9 8 13 13 C 1.54294 * 104.95870 * 23.86577 * 10 9 8 14 14 H 1.09007 * 110.33963 * 241.02333 * 13 10 9 15 15 C 1.53000 * 110.34099 * 118.87129 * 13 10 9 16 16 N 1.46901 * 109.46855 * 176.47126 * 15 13 10 17 17 C 1.46898 * 111.00189 * 179.97438 * 16 15 13 18 18 C 1.50696 * 109.47176 * 180.02562 * 17 16 15 19 19 O 1.21288 * 120.00279 * 0.02562 * 18 17 16 20 20 N 1.34777 * 119.99735 * 179.97438 * 18 17 16 21 21 C 1.37105 * 119.99904 * 179.97438 * 20 18 17 22 22 H 1.07991 * 119.99780 * 0.02562 * 21 20 18 23 23 C 1.38954 * 119.99815 * 179.72596 * 21 20 18 24 24 N 1.31412 * 119.99962 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 119.99686 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47350 * 0.02562 * 25 23 21 27 27 H 1.48500 * 109.46893 * 120.00104 * 25 23 21 28 28 H 1.48493 * 109.47057 * 240.00163 * 25 23 21 29 29 C 1.48307 * 127.76856 * 179.97438 * 8 6 5 30 30 H 1.08998 * 109.47109 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.47001 * 300.00217 * 1 2 3 32 32 H 1.09000 * 109.47115 * 59.99911 * 1 2 3 33 33 H 1.08998 * 109.47001 * 239.99783 * 2 1 3 34 34 H 1.08998 * 109.46881 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47264 * 299.99997 * 3 2 1 36 36 H 1.08998 * 109.47426 * 60.00043 * 3 2 1 37 37 H 1.08999 * 110.40950 * 21.62706 * 9 8 6 38 38 H 1.08997 * 110.40546 * 259.20034 * 9 8 6 39 39 H 1.08993 * 109.47786 * 304.46644 * 12 10 9 40 40 H 1.09004 * 109.47005 * 64.47039 * 12 10 9 41 41 H 1.09002 * 109.46994 * 184.46214 * 12 10 9 42 42 H 1.08998 * 109.47488 * 56.47328 * 15 13 10 43 43 H 1.08993 * 109.47041 * 296.46955 * 15 13 10 44 44 H 1.00907 * 110.99760 * 56.04664 * 16 15 13 45 45 H 1.09000 * 109.46741 * 60.00112 * 17 16 15 46 46 H 1.09002 * 109.46898 * 300.00102 * 17 16 15 47 47 H 0.97005 * 120.00189 * 0.02562 * 20 18 17 48 48 H 0.97000 * 119.99308 * 179.97438 * 24 23 21 49 49 H 1.09005 * 110.38133 * 100.79613 * 29 8 6 50 50 H 1.08995 * 110.50913 * 338.30906 * 29 8 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0207 -0.6939 1.2019 5 6 2.4120 -1.2473 2.1604 6 6 2.8894 -1.9224 3.3297 7 8 4.0159 -1.7114 3.7363 8 7 2.0901 -2.7914 3.9796 9 6 0.7004 -3.1765 3.6401 10 6 0.6384 -4.6944 3.9155 11 1 0.8226 -5.2552 2.9992 12 6 -0.7216 -5.0728 4.5054 13 6 1.7603 -4.9592 4.9411 14 1 2.4955 -5.6502 4.5285 15 6 1.1736 -5.5202 6.2381 16 7 2.2633 -5.8441 7.1685 17 6 1.7365 -6.3861 8.4281 18 6 2.8809 -6.7052 9.3552 19 8 4.0229 -6.5007 9.0018 20 7 2.6351 -7.2168 10.5777 21 6 3.6763 -7.5075 11.4210 22 1 4.6931 -7.3262 11.1060 23 6 3.4226 -8.0297 12.6835 24 7 2.1849 -8.2452 13.0689 25 14 4.8411 -8.4251 13.8328 26 1 6.1258 -8.0930 13.1661 27 1 4.7082 -7.6249 15.0767 28 1 4.8170 -9.8712 14.1695 29 6 2.4042 -3.5792 5.1963 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6767 1.9563 0.8900 37 1 0.4953 -2.9722 2.5893 38 1 -0.0074 -2.6455 4.2766 39 1 -0.9088 -4.4770 5.3987 40 1 -1.5029 -4.8803 3.7700 41 1 -0.7222 -6.1308 4.7676 42 1 0.6033 -6.4227 6.0183 43 1 0.5177 -4.7772 6.6914 44 1 2.8459 -5.0378 7.3377 45 1 1.1698 -7.2945 8.2238 46 1 1.0846 -5.6487 8.8964 47 1 1.7217 -7.3799 10.8605 48 1 2.0080 -8.6100 13.9501 49 1 1.9632 -3.1107 6.0762 50 1 3.4827 -3.6797 5.3183 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001733547780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:32:12 Heat of formation + Delta-G solvation = -50.015275 kcal Electronic energy + Delta-G solvation = -27803.754084 eV Core-core repulsion = 23830.964620 eV Total energy + Delta-G solvation = -3972.789465 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.39345 -40.16336 -39.36012 -37.36367 -36.62853 -35.82534 -34.14675 -33.25879 -32.97662 -31.25667 -28.74048 -28.06489 -27.65883 -26.57832 -25.53621 -24.30951 -23.41185 -21.88620 -21.13594 -20.11884 -19.85771 -19.12464 -17.97463 -17.61479 -17.25378 -16.82723 -16.72219 -16.50993 -16.14345 -15.88269 -15.56478 -15.29206 -15.20683 -14.98226 -14.67838 -14.44708 -14.20555 -13.67670 -13.56405 -13.37459 -13.21871 -13.10381 -13.08580 -13.04339 -12.93295 -12.78271 -12.73067 -12.45298 -12.41002 -12.35234 -12.12605 -11.73740 -11.65701 -11.56006 -11.51865 -11.38574 -11.29362 -11.25227 -10.34368 -10.01259 -10.00785 -9.28472 -8.47283 -5.95691 0.38949 1.11983 1.36009 1.41359 1.55509 1.76184 2.05785 2.29070 2.34540 2.86902 2.96535 3.20181 3.44595 3.48710 3.63742 3.83634 4.02992 4.07055 4.09153 4.15271 4.28356 4.33283 4.34762 4.43499 4.45710 4.50285 4.57138 4.59570 4.68390 4.74110 4.77492 4.78439 4.84074 4.91753 4.95757 5.03924 5.11411 5.13640 5.19564 5.30918 5.34556 5.35656 5.41049 5.52386 5.90050 6.12223 6.12537 6.24924 6.38687 6.60575 6.78826 7.12977 7.56641 8.12751 8.70272 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.024410 B = 0.001724 C = 0.001639 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1146.797651 B =16240.452332 C =17079.474001 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.004 3.996 3 C -0.148 4.148 4 C -0.036 4.036 5 C -0.271 4.271 6 C 0.645 3.355 7 O -0.579 6.579 8 N -0.612 5.612 9 C 0.103 3.897 10 C -0.088 4.088 11 H 0.091 0.909 12 C -0.145 4.145 13 C -0.089 4.089 14 H 0.077 0.923 15 C 0.072 3.928 16 N -0.690 5.690 17 C 0.067 3.933 18 C 0.435 3.565 19 O -0.626 6.626 20 N -0.573 5.573 21 C -0.335 4.335 22 H 0.076 0.924 23 C -0.011 4.011 24 N -0.919 5.919 25 Si 0.992 3.008 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.269 1.269 29 C 0.106 3.894 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.092 0.908 33 H 0.124 0.876 34 H 0.052 0.948 35 H 0.096 0.904 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.064 0.936 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.097 0.903 43 H 0.052 0.948 44 H 0.339 0.661 45 H 0.109 0.891 46 H 0.069 0.931 47 H 0.397 0.603 48 H 0.278 0.722 49 H 0.081 0.919 50 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.413 14.135 -27.322 34.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.014 4.014 3 C -0.205 4.205 4 C -0.038 4.038 5 C -0.273 4.273 6 C 0.436 3.564 7 O -0.461 6.461 8 N -0.343 5.343 9 C -0.018 4.018 10 C -0.108 4.108 11 H 0.110 0.890 12 C -0.202 4.202 13 C -0.109 4.109 14 H 0.095 0.905 15 C -0.056 4.056 16 N -0.323 5.323 17 C -0.066 4.066 18 C 0.222 3.778 19 O -0.513 6.513 20 N -0.210 5.210 21 C -0.465 4.465 22 H 0.094 0.906 23 C -0.211 4.211 24 N -0.560 5.560 25 Si 0.816 3.184 26 H -0.201 1.201 27 H -0.195 1.195 28 H -0.195 1.195 29 C -0.016 4.016 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.111 0.889 33 H 0.141 0.859 34 H 0.071 0.929 35 H 0.114 0.886 36 H 0.073 0.927 37 H 0.111 0.889 38 H 0.111 0.889 39 H 0.083 0.917 40 H 0.093 0.907 41 H 0.088 0.912 42 H 0.115 0.885 43 H 0.070 0.930 44 H 0.158 0.842 45 H 0.127 0.873 46 H 0.087 0.913 47 H 0.231 0.769 48 H 0.087 0.913 49 H 0.099 0.901 50 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -13.990 13.746 -27.463 33.747 hybrid contribution 0.528 0.367 1.660 1.780 sum -13.462 14.113 -25.803 32.345 Atomic orbital electron populations 1.21859 0.91047 1.03326 1.03793 1.18904 0.97539 0.95379 0.89554 1.21881 1.01349 0.93448 1.03809 1.23481 0.94629 0.92530 0.93205 1.20343 1.04536 1.04751 0.97718 1.14553 0.83120 0.78106 0.80668 1.90844 1.20785 1.65883 1.68616 1.48868 1.16166 1.40993 1.28229 1.22829 0.80751 0.95465 1.02769 1.22068 0.95659 0.94479 0.98623 0.89035 1.21921 0.94253 1.02532 1.01540 1.22078 0.98088 0.94505 0.96194 0.90465 1.22267 0.91851 1.00866 0.90666 1.60113 1.21927 1.38124 1.12123 1.21529 0.93683 1.01944 0.89396 1.21011 0.91136 0.82386 0.83230 1.90503 1.25148 1.59094 1.76533 1.41928 1.09463 1.56413 1.13212 1.19695 0.89315 1.41277 0.96196 0.90591 1.26003 1.00088 0.96467 0.98538 1.69670 1.19748 1.44884 1.21650 0.84890 0.77582 0.78319 0.77650 1.20085 1.19540 1.19458 1.22560 1.01124 0.91161 0.86773 0.91619 0.92500 0.88922 0.85863 0.92877 0.88566 0.92682 0.88906 0.88861 0.91682 0.90686 0.91213 0.88534 0.93003 0.84240 0.87317 0.91316 0.76858 0.91278 0.90055 0.92047 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.62 9.15 71.98 0.66 0.04 16 2 C 0.00 0.03 3.30 -12.60 -0.04 -0.01 16 3 C -0.15 -1.07 9.15 71.98 0.66 -0.41 16 4 C -0.04 -0.61 12.56 31.13 0.39 -0.22 16 5 C -0.27 -6.40 12.50 30.02 0.38 -6.03 16 6 C 0.64 19.06 7.75 85.49 0.66 19.72 16 7 O -0.58 -22.59 17.35 -4.06 -0.07 -22.66 16 8 N -0.61 -14.28 3.32 -816.42 -2.71 -16.99 16 9 C 0.10 1.45 6.44 86.53 0.56 2.00 16 10 C -0.09 -1.14 3.66 -9.88 -0.04 -1.17 16 11 H 0.09 1.09 8.14 -2.39 -0.02 1.07 16 12 C -0.15 -1.27 7.94 71.98 0.57 -0.70 16 13 C -0.09 -1.75 3.30 -9.88 -0.03 -1.78 16 14 H 0.08 1.82 8.14 -2.38 -0.02 1.80 16 15 C 0.07 1.45 3.88 86.30 0.33 1.79 16 16 N -0.69 -21.35 6.13 -517.95 -3.17 -24.52 16 17 C 0.07 2.23 6.17 85.56 0.53 2.75 16 18 C 0.43 20.97 7.82 87.66 0.69 21.66 16 19 O -0.63 -35.81 15.78 -3.05 -0.05 -35.86 16 20 N -0.57 -29.67 5.29 -306.99 -1.62 -31.29 16 21 C -0.34 -19.39 9.68 84.04 0.81 -18.58 16 22 H 0.08 4.73 7.16 -2.92 -0.02 4.71 16 23 C -0.01 -0.60 5.50 84.93 0.47 -0.13 16 24 N -0.92 -49.67 13.05 21.66 0.28 -49.39 16 25 Si 0.99 43.63 29.55 68.60 2.03 45.66 16 26 H -0.28 -12.41 7.11 99.48 0.71 -11.71 16 27 H -0.27 -11.34 7.11 99.48 0.71 -10.63 16 28 H -0.27 -11.29 7.11 99.48 0.71 -10.59 16 29 C 0.11 2.56 5.82 86.51 0.50 3.07 16 30 H 0.06 0.27 8.14 -2.39 -0.02 0.25 16 31 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 32 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 33 H 0.12 0.56 8.14 -2.39 -0.02 0.54 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.49 16 35 H 0.10 0.23 8.14 -2.39 -0.02 0.21 16 36 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 37 H 0.09 1.07 7.44 -2.39 -0.02 1.05 16 38 H 0.09 1.04 7.83 -2.39 -0.02 1.02 16 39 H 0.06 0.57 6.85 -2.39 -0.02 0.56 16 40 H 0.07 0.43 8.14 -2.38 -0.02 0.41 16 41 H 0.07 0.64 6.71 -2.39 -0.02 0.62 16 42 H 0.10 1.70 6.58 -2.39 -0.02 1.68 16 43 H 0.05 0.89 6.89 -2.39 -0.02 0.87 16 44 H 0.34 11.53 7.68 -89.69 -0.69 10.84 16 45 H 0.11 3.17 8.14 -2.39 -0.02 3.16 16 46 H 0.07 1.97 8.14 -2.39 -0.02 1.95 16 47 H 0.40 19.31 7.90 -92.70 -0.73 18.58 16 48 H 0.28 14.00 8.31 -92.71 -0.77 13.23 16 49 H 0.08 1.83 7.78 -2.38 -0.02 1.81 16 50 H 0.06 1.87 7.88 -2.39 -0.02 1.85 16 Total: -1.00 -79.80 413.12 1.32 -78.48 By element: Atomic # 1 Polarization: 35.05 SS G_CDS: -0.46 Total: 34.58 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 7.10 Total: 22.00 kcal Atomic # 7 Polarization: -114.97 SS G_CDS: -7.22 Total: -122.19 kcal Atomic # 8 Polarization: -58.41 SS G_CDS: -0.12 Total: -58.53 kcal Atomic # 14 Polarization: 43.63 SS G_CDS: 2.03 Total: 45.66 kcal Total: -79.80 1.32 -78.48 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001733547780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.462 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.319 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.477 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds