Wall clock time and date at job start Tue Mar 31 2020 18:52:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47328 * 2 1 4 4 N 1.46498 * 109.47406 * 119.99966 * 2 1 3 5 5 C 1.34780 * 120.00057 * 273.70553 * 4 2 1 6 6 O 1.21614 * 119.99947 * 359.71971 * 5 4 2 7 7 C 1.43202 * 119.99675 * 179.97438 * 5 4 2 8 8 C 4.88633 * 108.00871 * 105.48416 * 2 1 3 9 9 C 6.32543 * 108.44525 * 108.80758 * 2 1 3 10 10 C 1.52997 * 109.47274 * 333.30593 * 9 8 7 11 11 C 1.52998 * 109.47216 * 93.30806 * 9 8 7 12 12 C 1.53008 * 109.46940 * 213.30642 * 9 8 7 13 13 C 1.53007 * 109.47088 * 239.99970 * 2 1 3 14 14 C 1.53940 * 113.73131 * 161.02565 * 13 2 1 15 15 N 1.47966 * 86.17873 * 221.92196 * 14 13 2 16 16 C 1.46900 * 110.99919 * 137.58483 * 15 14 13 17 17 C 1.50703 * 109.47015 * 90.64129 * 16 15 14 18 18 O 1.21286 * 119.99772 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00051 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00253 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99908 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00124 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99807 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47462 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47308 * 120.00553 * 24 22 20 27 27 H 1.48508 * 109.47161 * 240.00345 * 24 22 20 28 28 C 1.47965 * 90.76343 * 24.69016 * 15 14 13 29 29 H 1.09000 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46626 * 300.00188 * 1 2 3 31 31 H 1.08999 * 109.46967 * 59.99709 * 1 2 3 32 32 H 0.97002 * 120.00229 * 93.70268 * 4 2 1 33 33 H 1.09000 * 109.47210 * 60.00027 * 10 9 8 34 34 H 1.09009 * 109.47313 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.47372 * 299.99989 * 10 9 8 36 36 H 1.09003 * 109.47167 * 59.99805 * 11 9 8 37 37 H 1.09009 * 109.47022 * 179.97438 * 11 9 8 38 38 H 1.09000 * 109.46879 * 299.99734 * 11 9 8 39 39 H 1.08999 * 109.47137 * 60.00358 * 12 9 8 40 40 H 1.09008 * 109.46581 * 179.97438 * 12 9 8 41 41 H 1.08989 * 109.47032 * 300.00087 * 12 9 8 42 42 H 1.09000 * 112.93739 * 292.73435 * 13 2 1 43 43 H 1.08995 * 113.76340 * 336.23568 * 14 13 2 44 44 H 1.08997 * 113.75579 * 107.60595 * 14 13 2 45 45 H 1.08995 * 109.47098 * 210.64023 * 16 15 14 46 46 H 1.08994 * 109.47195 * 330.63928 * 16 15 14 47 47 H 0.97006 * 119.99909 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99617 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.76109 * 220.98898 * 28 15 14 50 50 H 1.08996 * 113.75534 * 89.62600 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1719 -0.0121 2.3505 6 8 1.9099 1.1745 2.3979 7 6 2.6488 -0.6873 3.5199 8 6 3.0407 -1.2406 4.4783 9 6 3.5314 -1.9345 5.6801 10 6 2.3437 -2.4870 6.4706 11 6 4.4482 -3.0869 5.2650 12 6 4.3123 -0.9507 6.5538 13 6 2.0400 -0.7213 -1.2493 14 6 3.5030 -0.3944 -1.5995 15 7 3.0479 -0.3292 -3.0060 16 6 3.6518 0.8148 -3.7021 17 6 4.9452 0.3855 -4.3455 18 8 5.3266 -0.7604 -4.2346 19 7 5.6785 1.2753 -5.0433 20 6 6.8554 0.8850 -5.6281 21 1 7.1947 -0.1356 -5.5301 22 6 7.6112 1.8023 -6.3480 23 7 7.1982 3.0440 -6.4678 24 14 9.2144 1.2702 -7.1455 25 1 9.4534 -0.1683 -6.8649 26 1 9.1310 1.4806 -8.6131 27 1 10.3333 2.0753 -6.5928 28 6 1.6703 -0.0155 -2.5664 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2312 -1.6362 1.1574 33 1 1.7873 -3.1878 5.8482 34 1 2.7071 -3.0005 7.3609 35 1 1.6905 -1.6661 6.7664 36 1 5.2944 -2.6932 4.7018 37 1 4.8119 -3.6004 6.1551 38 1 3.8918 -3.7877 4.6426 39 1 3.6591 -0.1298 6.8496 40 1 4.6753 -1.4646 7.4441 41 1 5.1583 -0.5571 5.9907 42 1 1.8159 -1.7880 -1.2452 43 1 3.8461 0.5616 -1.2043 44 1 4.1955 -1.2120 -1.3995 45 1 2.9668 1.1761 -4.4691 46 1 3.8492 1.6127 -2.9864 47 1 5.3736 2.1919 -5.1317 48 1 7.7260 3.6844 -6.9700 49 1 0.8987 -0.5302 -3.1390 50 1 1.4775 1.0513 -2.4539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734115932.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:09 Heat of formation + Delta-G solvation = 0.040930 kcal Electronic energy + Delta-G solvation = -27789.036479 eV Core-core repulsion = 23818.417614 eV Total energy + Delta-G solvation = -3970.618865 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.56764 -39.47204 -37.97533 -37.73397 -35.46935 -33.85271 -32.84605 -31.40762 -31.07574 -29.41444 -27.82299 -27.79555 -26.34898 -25.57103 -24.81121 -23.76098 -21.81543 -20.99298 -20.02879 -19.22311 -18.44125 -17.80262 -16.79573 -16.35163 -16.07779 -15.42253 -15.29622 -15.21987 -14.81135 -14.77375 -14.63980 -14.44497 -14.13542 -13.71897 -13.41105 -13.09020 -12.95497 -12.94939 -12.74118 -12.55338 -12.36201 -12.26268 -12.20851 -11.93315 -11.79197 -11.74601 -11.60475 -11.38010 -11.08325 -11.03779 -10.79602 -10.66830 -10.61264 -10.58911 -10.37815 -10.32050 -10.18714 -9.47937 -9.40230 -8.69197 -8.13984 -7.92527 -6.38469 -3.79046 1.31063 1.99419 2.77544 3.18267 3.28215 3.28368 3.35770 3.75709 3.91143 3.96528 4.23259 4.33317 4.39137 4.41568 4.49604 4.52462 4.90736 4.98256 5.01899 5.09220 5.11442 5.16157 5.20076 5.23997 5.24081 5.33805 5.34520 5.38605 5.44973 5.49442 5.51032 5.58252 5.65654 5.71098 5.74955 5.75285 5.76473 5.77324 5.91303 6.01205 6.09842 6.28526 6.31154 6.60639 6.92464 7.16319 7.20116 7.58349 7.87231 8.09862 8.65929 9.22007 9.58664 10.11158 10.79566 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.001977 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.854276 B =14160.149160 C =15563.248794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.093 0.907 4 N -0.709 5.709 5 C 0.635 3.365 6 O -0.524 6.524 7 C -0.224 4.224 8 C -0.067 4.067 9 C 0.035 3.965 10 C -0.141 4.141 11 C -0.142 4.142 12 C -0.143 4.143 13 C -0.126 4.126 14 C 0.017 3.983 15 N -0.449 5.449 16 C 0.009 3.991 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.011 3.989 29 H 0.059 0.941 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.405 0.595 33 H 0.062 0.938 34 H 0.071 0.929 35 H 0.062 0.938 36 H 0.063 0.937 37 H 0.070 0.930 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.105 0.895 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.088 0.912 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.092 0.908 50 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.162 -8.565 23.560 28.314 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.046 3.954 3 H 0.111 0.889 4 N -0.360 5.360 5 C 0.422 3.578 6 O -0.402 6.402 7 C -0.227 4.227 8 C -0.069 4.069 9 C 0.035 3.965 10 C -0.198 4.198 11 C -0.200 4.200 12 C -0.200 4.200 13 C -0.145 4.145 14 C -0.112 4.112 15 N -0.171 5.171 16 C -0.123 4.123 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.193 1.193 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.119 4.119 29 H 0.078 0.922 30 H 0.079 0.921 31 H 0.090 0.910 32 H 0.239 0.761 33 H 0.081 0.919 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.083 0.917 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.123 0.877 43 H 0.086 0.914 44 H 0.109 0.891 45 H 0.106 0.894 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.110 0.890 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -12.871 -8.858 23.059 27.854 hybrid contribution 0.663 0.842 -0.170 1.085 sum -12.208 -8.016 22.889 27.151 Atomic orbital electron populations 1.22151 0.94661 1.02418 1.02791 1.21153 0.94378 0.97381 0.82531 0.88906 1.45893 1.66961 1.13717 1.09425 1.14674 0.77227 0.85305 0.80622 1.90864 1.50353 1.14449 1.84487 1.20703 1.04320 1.00773 0.96860 1.22534 0.93584 0.96233 0.94550 1.17969 0.96062 0.94477 0.87967 1.21902 0.96659 1.01400 0.99874 1.21919 0.99100 0.96671 1.02276 1.21921 1.00198 0.98689 0.99225 1.23336 0.97101 1.01178 0.92921 1.23985 0.95732 1.02020 0.89449 1.68381 1.01447 1.35514 1.11749 1.22485 0.97502 0.92880 0.99397 1.19694 0.86170 0.86707 0.84223 1.90513 1.72179 1.19216 1.64015 1.41888 1.20664 1.11594 1.46384 1.19742 0.97064 0.97871 1.27969 0.87935 1.25259 0.99912 0.95025 0.97901 1.69623 1.39614 1.03066 1.42155 0.85805 0.81083 0.78904 0.78578 1.19252 1.20772 1.20797 1.23958 0.94380 0.99494 0.94068 0.92198 0.92117 0.91024 0.76076 0.91903 0.91036 0.91925 0.91747 0.91068 0.91829 0.91867 0.91088 0.91788 0.87663 0.91352 0.89103 0.89389 0.92420 0.77558 0.91985 0.88998 0.91102 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.38 9.35 37.16 0.35 -1.04 16 2 C 0.15 1.49 2.36 -67.93 -0.16 1.33 16 3 H 0.09 1.10 7.42 -51.93 -0.39 0.72 16 4 N -0.71 -6.93 5.06 -56.24 -0.28 -7.22 16 5 C 0.64 7.94 7.63 -14.33 -0.11 7.83 16 6 O -0.52 -8.42 16.72 5.27 0.09 -8.33 16 7 C -0.22 -2.53 13.61 -38.84 -0.53 -3.05 16 8 C -0.07 -0.63 11.77 -37.13 -0.44 -1.07 16 9 C 0.04 0.22 0.95 -157.30 -0.15 0.08 16 10 C -0.14 -0.70 8.43 37.16 0.31 -0.38 16 11 C -0.14 -0.75 8.43 37.16 0.31 -0.43 16 12 C -0.14 -0.82 8.43 37.16 0.31 -0.51 16 13 C -0.13 -1.32 3.45 -89.68 -0.31 -1.63 16 14 C 0.02 0.24 7.51 -2.76 -0.02 0.22 16 15 N -0.45 -7.38 5.65 -239.72 -1.35 -8.74 16 16 C 0.01 0.17 5.28 -4.97 -0.03 0.14 16 17 C 0.45 10.89 7.83 -10.99 -0.09 10.81 16 18 O -0.58 -16.16 16.01 5.55 0.09 -16.07 16 19 N -0.57 -14.77 5.29 -10.96 -0.06 -14.83 16 20 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.46 16 23 N -0.90 -25.00 13.05 55.50 0.72 -24.28 16 24 Si 0.93 21.41 29.55 -169.99 -5.02 16.39 16 25 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 26 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 27 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 28 C 0.01 0.12 6.76 -2.76 -0.02 0.10 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.02 16 30 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.07 0.55 7.59 -51.93 -0.39 0.15 16 32 H 0.40 3.07 8.58 -40.82 -0.35 2.72 16 33 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.07 0.24 8.14 -51.92 -0.42 -0.19 16 35 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.07 0.26 8.14 -51.92 -0.42 -0.16 16 38 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 39 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.07 0.28 8.14 -51.92 -0.42 -0.15 16 41 H 0.06 0.41 8.14 -51.94 -0.42 -0.02 16 42 H 0.11 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.99 7.35 -51.93 -0.38 0.61 16 44 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 45 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 46 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 47 H 0.39 9.72 7.90 -40.82 -0.32 9.40 16 48 H 0.27 7.06 8.31 -40.82 -0.34 6.72 16 49 H 0.09 0.96 8.14 -51.93 -0.42 0.54 16 50 H 0.07 0.74 7.88 -51.93 -0.41 0.33 16 LS Contribution 421.24 15.07 6.35 6.35 Total: -1.00 -35.13 421.24 -8.75 -43.88 By element: Atomic # 1 Polarization: 17.07 SS G_CDS: -8.48 Total: 8.60 kcal Atomic # 6 Polarization: 5.06 SS G_CDS: -0.80 Total: 4.26 kcal Atomic # 7 Polarization: -54.09 SS G_CDS: -0.97 Total: -55.06 kcal Atomic # 8 Polarization: -24.58 SS G_CDS: 0.18 Total: -24.40 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -5.02 Total: 16.39 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -35.13 -8.75 -43.88 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734115932.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.917 kcal (2) G-P(sol) polarization free energy of solvation -35.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.786 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.745 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.877 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds