Wall clock time and date at job start Tue Mar 31 2020 18:52:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09000 * 109.47328 * 2 1 4 4 N 1.46498 * 109.47406 * 119.99966 * 2 1 3 5 5 C 1.34780 * 120.00057 * 273.70553 * 4 2 1 6 6 O 1.21614 * 119.99947 * 359.71971 * 5 4 2 7 7 C 1.43202 * 119.99675 * 179.97438 * 5 4 2 8 8 C 4.88633 * 108.00871 * 105.48416 * 2 1 3 9 9 C 6.32543 * 108.44525 * 108.80758 * 2 1 3 10 10 C 1.52997 * 109.47274 * 333.30593 * 9 8 7 11 11 C 1.52998 * 109.47216 * 93.30806 * 9 8 7 12 12 C 1.53008 * 109.46940 * 213.30642 * 9 8 7 13 13 C 1.53007 * 109.47088 * 239.99970 * 2 1 3 14 14 C 1.53940 * 113.73131 * 161.02565 * 13 2 1 15 15 N 1.47966 * 86.17873 * 221.92196 * 14 13 2 16 16 C 1.46900 * 110.99919 * 137.58483 * 15 14 13 17 17 C 1.50703 * 109.47015 * 90.64129 * 16 15 14 18 18 O 1.21286 * 119.99772 * 359.97438 * 17 16 15 19 19 N 1.34771 * 120.00051 * 180.02562 * 17 16 15 20 20 C 1.37095 * 120.00253 * 179.97438 * 19 17 16 21 21 H 1.08000 * 119.99908 * 0.02562 * 20 19 17 22 22 C 1.38955 * 120.00124 * 179.97438 * 20 19 17 23 23 N 1.31413 * 119.99887 * 0.02562 * 22 20 19 24 24 Si 1.86793 * 119.99807 * 180.02562 * 22 20 19 25 25 H 1.48499 * 109.47462 * 0.02562 * 24 22 20 26 26 H 1.48502 * 109.47308 * 120.00553 * 24 22 20 27 27 H 1.48508 * 109.47161 * 240.00345 * 24 22 20 28 28 C 1.47965 * 90.76343 * 24.69016 * 15 14 13 29 29 H 1.09000 * 109.47010 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.46626 * 300.00188 * 1 2 3 31 31 H 1.08999 * 109.46967 * 59.99709 * 1 2 3 32 32 H 0.97002 * 120.00229 * 93.70268 * 4 2 1 33 33 H 1.09000 * 109.47210 * 60.00027 * 10 9 8 34 34 H 1.09009 * 109.47313 * 180.02562 * 10 9 8 35 35 H 1.08999 * 109.47372 * 299.99989 * 10 9 8 36 36 H 1.09003 * 109.47167 * 59.99805 * 11 9 8 37 37 H 1.09009 * 109.47022 * 179.97438 * 11 9 8 38 38 H 1.09000 * 109.46879 * 299.99734 * 11 9 8 39 39 H 1.08999 * 109.47137 * 60.00358 * 12 9 8 40 40 H 1.09008 * 109.46581 * 179.97438 * 12 9 8 41 41 H 1.08989 * 109.47032 * 300.00087 * 12 9 8 42 42 H 1.09000 * 112.93739 * 292.73435 * 13 2 1 43 43 H 1.08995 * 113.76340 * 336.23568 * 14 13 2 44 44 H 1.08997 * 113.75579 * 107.60595 * 14 13 2 45 45 H 1.08995 * 109.47098 * 210.64023 * 16 15 14 46 46 H 1.08994 * 109.47195 * 330.63928 * 16 15 14 47 47 H 0.97006 * 119.99909 * 359.97438 * 19 17 16 48 48 H 0.97000 * 119.99617 * 179.97438 * 23 22 20 49 49 H 1.08996 * 113.76109 * 220.98898 * 28 15 14 50 50 H 1.08996 * 113.75534 * 89.62600 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 1.1961 5 6 2.1719 -0.0121 2.3505 6 8 1.9099 1.1745 2.3979 7 6 2.6488 -0.6873 3.5199 8 6 3.0407 -1.2406 4.4783 9 6 3.5314 -1.9345 5.6801 10 6 2.3437 -2.4870 6.4706 11 6 4.4482 -3.0869 5.2650 12 6 4.3123 -0.9507 6.5538 13 6 2.0400 -0.7213 -1.2493 14 6 3.5030 -0.3944 -1.5995 15 7 3.0479 -0.3292 -3.0060 16 6 3.6518 0.8148 -3.7021 17 6 4.9452 0.3855 -4.3455 18 8 5.3266 -0.7604 -4.2346 19 7 5.6785 1.2753 -5.0433 20 6 6.8554 0.8850 -5.6281 21 1 7.1947 -0.1356 -5.5301 22 6 7.6112 1.8023 -6.3480 23 7 7.1982 3.0440 -6.4678 24 14 9.2144 1.2702 -7.1455 25 1 9.4534 -0.1683 -6.8649 26 1 9.1310 1.4806 -8.6131 27 1 10.3333 2.0753 -6.5928 28 6 1.6703 -0.0155 -2.5664 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3632 0.5139 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 2.2312 -1.6362 1.1574 33 1 1.7873 -3.1878 5.8482 34 1 2.7071 -3.0005 7.3609 35 1 1.6905 -1.6661 6.7664 36 1 5.2944 -2.6932 4.7018 37 1 4.8119 -3.6004 6.1551 38 1 3.8918 -3.7877 4.6426 39 1 3.6591 -0.1298 6.8496 40 1 4.6753 -1.4646 7.4441 41 1 5.1583 -0.5571 5.9907 42 1 1.8159 -1.7880 -1.2452 43 1 3.8461 0.5616 -1.2043 44 1 4.1955 -1.2120 -1.3995 45 1 2.9668 1.1761 -4.4691 46 1 3.8492 1.6127 -2.9864 47 1 5.3736 2.1919 -5.1317 48 1 7.7260 3.6844 -6.9700 49 1 0.8987 -0.5302 -3.1390 50 1 1.4775 1.0513 -2.4539 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734115932.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:08 Heat of formation + Delta-G solvation = -25.789105 kcal Electronic energy + Delta-G solvation = -27790.156553 eV Core-core repulsion = 23818.417614 eV Total energy + Delta-G solvation = -3971.738939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.62623 -40.61106 -39.57726 -38.49375 -36.49596 -35.91112 -33.69283 -33.30293 -32.25175 -30.58853 -28.22954 -28.20624 -27.62227 -26.97631 -25.93180 -25.05448 -22.74297 -21.82026 -21.01979 -20.94637 -19.93083 -19.31514 -17.81967 -17.74608 -17.01258 -16.63392 -16.57377 -16.37414 -16.28529 -15.87016 -15.61631 -15.24674 -15.20163 -15.12858 -14.80601 -14.30457 -14.03926 -13.69145 -13.54433 -13.47972 -13.38045 -13.30601 -13.00801 -12.82930 -12.74068 -12.68559 -12.63484 -12.42747 -12.30677 -12.27638 -12.13813 -11.91183 -11.87140 -11.68340 -11.52304 -11.47630 -11.33433 -11.25148 -10.40172 -10.28996 -10.02584 -9.63484 -8.48174 -5.97104 0.44022 1.19799 1.35055 1.39717 1.54386 1.94439 2.04232 2.27355 2.40834 2.76554 3.03613 3.17895 3.32632 3.45279 3.60028 3.92747 3.94354 3.94773 4.10099 4.14956 4.20706 4.26221 4.34762 4.40138 4.44789 4.49831 4.52311 4.71978 4.73296 4.74898 4.77477 4.82210 4.82939 4.94584 4.94721 4.96051 5.05440 5.14965 5.18729 5.28160 5.33255 5.35299 5.38843 5.40288 5.43645 5.88754 6.07568 6.14028 6.32688 6.59170 6.98316 7.11594 7.55015 8.11420 8.69589 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.012393 B = 0.001977 C = 0.001799 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2258.854276 B =14160.149160 C =15563.248794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.154 3.846 3 H 0.073 0.927 4 N -0.696 5.696 5 C 0.635 3.365 6 O -0.570 6.570 7 C -0.269 4.269 8 C -0.041 4.041 9 C 0.029 3.971 10 C -0.139 4.139 11 C -0.141 4.141 12 C -0.144 4.144 13 C -0.098 4.098 14 C 0.008 3.992 15 N -0.481 5.481 16 C 0.023 3.977 17 C 0.441 3.559 18 O -0.618 6.618 19 N -0.577 5.577 20 C -0.333 4.333 21 H 0.077 0.923 22 C -0.015 4.015 23 N -0.921 5.921 24 Si 0.994 3.006 25 H -0.274 1.274 26 H -0.269 1.269 27 H -0.270 1.270 28 C 0.018 3.982 29 H 0.076 0.924 30 H 0.046 0.954 31 H 0.085 0.915 32 H 0.416 0.584 33 H 0.063 0.937 34 H 0.094 0.906 35 H 0.056 0.944 36 H 0.054 0.946 37 H 0.093 0.907 38 H 0.064 0.936 39 H 0.056 0.944 40 H 0.095 0.905 41 H 0.053 0.947 42 H 0.122 0.878 43 H 0.063 0.937 44 H 0.071 0.929 45 H 0.110 0.890 46 H 0.074 0.926 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.111 0.889 50 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.951 -9.448 24.426 29.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.049 3.951 3 H 0.092 0.908 4 N -0.346 5.346 5 C 0.422 3.578 6 O -0.451 6.451 7 C -0.272 4.272 8 C -0.044 4.044 9 C 0.029 3.971 10 C -0.196 4.196 11 C -0.198 4.198 12 C -0.201 4.201 13 C -0.118 4.118 14 C -0.121 4.121 15 N -0.204 5.204 16 C -0.109 4.109 17 C 0.229 3.771 18 O -0.504 6.504 19 N -0.215 5.215 20 C -0.462 4.462 21 H 0.095 0.905 22 C -0.215 4.215 23 N -0.562 5.562 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.194 1.194 27 H -0.196 1.196 28 C -0.111 4.111 29 H 0.095 0.905 30 H 0.065 0.935 31 H 0.104 0.896 32 H 0.253 0.747 33 H 0.082 0.918 34 H 0.113 0.887 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.083 0.917 39 H 0.075 0.925 40 H 0.114 0.886 41 H 0.072 0.928 42 H 0.140 0.860 43 H 0.081 0.919 44 H 0.089 0.911 45 H 0.128 0.872 46 H 0.092 0.908 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.130 0.870 50 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -13.685 -9.749 23.916 29.229 hybrid contribution 0.916 1.064 -0.380 1.454 sum -12.769 -8.685 23.537 28.151 Atomic orbital electron populations 1.22102 0.92926 1.03512 1.02821 1.21098 0.95558 0.96259 0.82140 0.90837 1.45820 1.65886 1.14181 1.08737 1.14847 0.76653 0.84837 0.81436 1.90827 1.52664 1.16276 1.85289 1.20708 1.06324 1.02442 0.97743 1.23358 0.91702 0.94982 0.94331 1.18295 0.97026 0.94835 0.86920 1.21916 0.95881 1.01308 1.00495 1.21935 0.98438 0.96191 1.03248 1.21951 0.99598 0.98622 0.99889 1.23151 0.93772 1.02075 0.92765 1.23999 0.97897 1.01181 0.89029 1.68345 1.04130 1.35270 1.12659 1.22361 0.94492 0.93913 1.00145 1.20828 0.87540 0.85825 0.82930 1.90474 1.73664 1.21056 1.65233 1.41975 1.20531 1.12059 1.46917 1.19691 0.98977 0.97343 1.30237 0.90466 1.26069 1.02796 0.94921 0.97683 1.69683 1.40739 1.03656 1.42153 0.84855 0.77116 0.78189 0.78069 1.19825 1.19450 1.19559 1.24087 0.92044 1.00906 0.94037 0.90542 0.93529 0.89573 0.74680 0.91812 0.88718 0.92515 0.92727 0.88816 0.91703 0.92527 0.88595 0.92778 0.85987 0.91913 0.91058 0.87203 0.90763 0.77084 0.91306 0.87040 0.89520 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.35 9.35 71.98 0.67 -1.68 16 2 C 0.15 2.90 2.36 44.99 0.11 3.01 16 3 H 0.07 1.73 7.42 -2.39 -0.02 1.72 16 4 N -0.70 -13.42 5.06 -450.10 -2.28 -15.69 16 5 C 0.63 16.36 7.63 85.49 0.65 17.02 16 6 O -0.57 -19.10 16.72 -4.07 -0.07 -19.17 16 7 C -0.27 -6.23 13.61 30.02 0.41 -5.82 16 8 C -0.04 -0.77 11.77 31.12 0.37 -0.40 16 9 C 0.03 0.33 0.95 -53.99 -0.05 0.28 16 10 C -0.14 -1.09 8.43 71.98 0.61 -0.48 16 11 C -0.14 -1.23 8.43 71.98 0.61 -0.62 16 12 C -0.14 -1.45 8.43 71.98 0.61 -0.84 16 13 C -0.10 -1.90 3.45 -10.14 -0.04 -1.93 16 14 C 0.01 0.23 7.51 86.41 0.65 0.88 16 15 N -0.48 -15.39 5.65 -912.34 -5.15 -20.55 16 16 C 0.02 0.81 5.28 85.56 0.45 1.26 16 17 C 0.44 21.96 7.83 87.66 0.69 22.64 16 18 O -0.62 -35.84 16.01 -3.05 -0.05 -35.89 16 19 N -0.58 -30.72 5.29 -306.99 -1.62 -32.34 16 20 C -0.33 -19.48 9.68 84.04 0.81 -18.67 16 21 H 0.08 4.83 7.16 -2.91 -0.02 4.81 16 22 C -0.02 -0.83 5.50 84.93 0.47 -0.37 16 23 N -0.92 -50.81 13.05 21.66 0.28 -50.53 16 24 Si 0.99 43.89 29.55 68.60 2.03 45.92 16 25 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 26 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 27 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 28 C 0.02 0.37 6.76 86.41 0.58 0.95 16 29 H 0.08 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.09 1.07 7.59 -2.39 -0.02 1.05 16 32 H 0.42 5.99 8.58 -92.71 -0.80 5.20 16 33 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 34 H 0.09 0.33 8.14 -2.38 -0.02 0.31 16 35 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 36 H 0.05 0.59 8.14 -2.39 -0.02 0.57 16 37 H 0.09 0.41 8.14 -2.38 -0.02 0.40 16 38 H 0.06 0.55 8.14 -2.39 -0.02 0.54 16 39 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 40 H 0.10 0.50 8.14 -2.38 -0.02 0.48 16 41 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 42 H 0.12 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.06 1.85 7.35 -2.39 -0.02 1.83 16 44 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 45 H 0.11 3.41 8.08 -2.39 -0.02 3.39 16 46 H 0.07 2.40 7.38 -2.39 -0.02 2.38 16 47 H 0.40 19.96 7.90 -92.70 -0.73 19.23 16 48 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.11 1.93 8.14 -2.39 -0.02 1.91 16 50 H 0.09 1.56 7.88 -2.39 -0.02 1.54 16 Total: -1.00 -78.93 421.24 0.15 -78.78 By element: Atomic # 1 Polarization: 34.84 SS G_CDS: -0.58 Total: 34.26 kcal Atomic # 6 Polarization: 7.61 SS G_CDS: 7.59 Total: 15.21 kcal Atomic # 7 Polarization: -110.34 SS G_CDS: -8.77 Total: -119.11 kcal Atomic # 8 Polarization: -54.94 SS G_CDS: -0.12 Total: -55.06 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -78.93 0.15 -78.78 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734115932.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.993 kcal (2) G-P(sol) polarization free energy of solvation -78.934 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.942 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.782 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.789 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds