Wall clock time and date at job start Tue Mar 31 2020 18:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 N 1.46500 * 109.46944 * 239.99569 * 2 1 3 5 5 C 1.34780 * 119.99944 * 85.00803 * 4 2 1 6 6 O 1.21612 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.43195 * 119.99888 * 179.97438 * 5 4 2 8 8 C 4.88629 * 107.70304 * 254.46188 * 2 1 3 9 9 C 6.32552 * 108.20733 * 251.15459 * 2 1 3 10 10 C 1.53000 * 109.47288 * 71.75108 * 9 8 7 11 11 C 1.52997 * 109.46584 * 191.74762 * 9 8 7 12 12 C 1.52994 * 109.47166 * 311.74779 * 9 8 7 13 13 C 1.53006 * 109.46623 * 119.99829 * 2 1 3 14 14 C 1.53932 * 113.73220 * 276.72462 * 13 2 1 15 15 N 1.47963 * 86.17824 * 221.92173 * 14 13 2 16 16 C 1.46900 * 110.99920 * 137.58603 * 15 14 13 17 17 C 1.50700 * 109.47417 * 90.63534 * 16 15 14 18 18 O 1.21291 * 120.00066 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99987 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99856 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99865 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99788 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99527 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47508 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47082 * 119.99819 * 24 22 20 27 27 H 1.48494 * 109.47158 * 239.99363 * 24 22 20 28 28 C 1.47956 * 90.76518 * 24.69157 * 15 14 13 29 29 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47362 * 300.00723 * 1 2 3 31 31 H 1.09002 * 109.46716 * 60.00082 * 1 2 3 32 32 H 0.96998 * 119.99878 * 265.00035 * 4 2 1 33 33 H 1.09000 * 109.46985 * 59.99404 * 10 9 8 34 34 H 1.08993 * 109.47003 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.46699 * 299.99981 * 10 9 8 36 36 H 1.09002 * 109.47490 * 60.00356 * 11 9 8 37 37 H 1.09001 * 109.47296 * 179.97438 * 11 9 8 38 38 H 1.08992 * 109.47522 * 300.00116 * 11 9 8 39 39 H 1.08997 * 109.47225 * 60.00804 * 12 9 8 40 40 H 1.09004 * 109.46955 * 180.02562 * 12 9 8 41 41 H 1.09002 * 109.47192 * 299.99818 * 12 9 8 42 42 H 1.09001 * 112.93489 * 48.43591 * 13 2 1 43 43 H 1.08997 * 113.76329 * 336.24011 * 14 13 2 44 44 H 1.08998 * 113.75871 * 107.60749 * 14 13 2 45 45 H 1.09003 * 109.47176 * 210.64391 * 16 15 14 46 46 H 1.09005 * 109.47269 * 330.63940 * 16 15 14 47 47 H 0.96997 * 119.99763 * 0.02562 * 19 17 16 48 48 H 0.96994 * 120.00180 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.76134 * 220.99069 * 28 15 14 50 50 H 1.08998 * 113.86013 * 89.63623 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8576 1.1615 -2.4118 7 6 2.6249 -0.6934 -3.5261 8 6 3.0158 -1.2470 -4.4848 9 6 3.5064 -1.9409 -5.6867 10 6 2.6619 -1.5288 -6.8941 11 6 4.9680 -1.5619 -5.9334 12 6 3.3994 -3.4533 -5.4818 13 6 2.0399 -0.7213 1.2494 14 6 2.0908 0.1712 2.5025 15 7 3.3950 -0.4684 2.7839 16 6 4.3807 0.5226 3.2360 17 6 4.3309 0.6315 4.7382 18 8 3.5514 -0.0498 5.3702 19 7 5.1533 1.4852 5.3796 20 6 5.1084 1.5839 6.7463 21 1 4.4143 0.9773 7.3090 22 6 5.9559 2.4644 7.4075 23 7 6.8008 3.2022 6.7229 24 14 5.8941 2.5993 9.2696 25 1 4.8655 1.6686 9.7995 26 1 7.2204 2.2448 9.8359 27 1 5.5480 3.9913 9.6538 28 6 3.5750 -0.7786 1.3485 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2489 -1.6319 -1.1525 33 1 2.7382 -0.4513 -7.0400 34 1 3.0255 -2.0423 -7.7841 35 1 1.6206 -1.7988 -6.7182 36 1 5.5698 -1.8555 -5.0733 37 1 5.3316 -2.0760 -6.8231 38 1 5.0443 -0.4844 -6.0794 39 1 2.3581 -3.7234 -5.3061 40 1 3.7631 -3.9672 -6.3716 41 1 4.0011 -3.7469 -4.6216 42 1 1.5535 -1.6829 1.4129 43 1 2.1625 1.2360 2.2808 44 1 1.3204 -0.0603 3.2381 45 1 5.3782 0.2100 2.9271 46 1 4.1505 1.4919 2.7937 47 1 5.7770 2.0298 4.8742 48 1 7.3921 3.8171 7.1844 49 1 3.9905 -1.7689 1.1619 50 1 4.0809 0.0073 0.7876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734115933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:12 Heat of formation + Delta-G solvation = 0.057508 kcal Electronic energy + Delta-G solvation = -27748.163986 eV Core-core repulsion = 23777.545840 eV Total energy + Delta-G solvation = -3970.618146 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -40.59602 -39.47165 -38.01604 -37.73324 -35.47545 -33.85159 -32.88404 -31.40822 -31.07714 -29.46307 -27.85928 -27.84628 -26.15297 -25.79345 -24.78880 -23.77218 -21.80263 -21.00471 -20.01607 -19.23034 -18.53260 -17.81717 -16.75199 -16.38418 -16.01506 -15.59571 -15.36485 -15.16595 -14.85792 -14.74437 -14.68519 -14.46706 -14.06087 -13.71942 -13.48804 -13.04099 -12.99927 -12.96555 -12.71303 -12.57923 -12.32784 -12.30155 -12.25191 -12.00663 -11.82762 -11.79344 -11.55272 -11.32848 -11.10510 -11.03209 -10.88640 -10.66532 -10.65698 -10.57940 -10.40675 -10.31918 -10.18672 -9.47914 -9.42009 -8.70377 -8.14257 -7.92611 -6.38451 -3.79144 1.27374 1.95354 2.73755 3.18441 3.24597 3.28601 3.36036 3.72028 3.90292 3.96266 4.23617 4.33232 4.35310 4.36882 4.46359 4.52285 4.87259 4.96655 5.04347 5.05346 5.07064 5.13017 5.19797 5.20916 5.26283 5.29664 5.29998 5.41360 5.45732 5.46222 5.50663 5.54643 5.67462 5.69931 5.70634 5.71539 5.73768 5.77169 5.93446 5.99883 6.14820 6.25198 6.30834 6.59882 6.88187 7.14077 7.19117 7.58384 7.84453 8.09827 8.65828 9.21959 9.58540 10.10970 10.79584 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.001759 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.119486 B =15910.094014 C =16538.277752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.150 3.850 3 H 0.092 0.908 4 N -0.709 5.709 5 C 0.634 3.366 6 O -0.523 6.523 7 C -0.223 4.223 8 C -0.067 4.067 9 C 0.036 3.964 10 C -0.142 4.142 11 C -0.143 4.143 12 C -0.142 4.142 13 C -0.127 4.127 14 C 0.023 3.977 15 N -0.448 5.448 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.021 3.979 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.004 3.996 29 H 0.059 0.941 30 H 0.072 0.928 31 H 0.060 0.940 32 H 0.404 0.596 33 H 0.063 0.937 34 H 0.070 0.930 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.071 0.929 38 H 0.063 0.937 39 H 0.062 0.938 40 H 0.070 0.930 41 H 0.063 0.937 42 H 0.106 0.894 43 H 0.070 0.930 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.058 0.942 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.087 0.913 50 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.863 -11.011 -27.494 30.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.046 3.954 3 H 0.110 0.890 4 N -0.360 5.360 5 C 0.421 3.579 6 O -0.400 6.400 7 C -0.226 4.226 8 C -0.070 4.070 9 C 0.035 3.965 10 C -0.200 4.200 11 C -0.200 4.200 12 C -0.199 4.199 13 C -0.146 4.146 14 C -0.106 4.106 15 N -0.170 5.170 16 C -0.123 4.123 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.427 4.427 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.125 4.125 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.079 0.921 32 H 0.239 0.761 33 H 0.082 0.918 34 H 0.089 0.911 35 H 0.081 0.919 36 H 0.082 0.918 37 H 0.090 0.910 38 H 0.082 0.918 39 H 0.081 0.919 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.125 0.875 43 H 0.089 0.911 44 H 0.113 0.887 45 H 0.105 0.895 46 H 0.076 0.924 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.106 0.894 50 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -7.406 -10.981 -26.478 29.606 hybrid contribution 0.696 0.829 0.138 1.091 sum -6.710 -10.152 -26.340 29.016 Atomic orbital electron populations 1.22158 0.94582 1.02410 1.02913 1.21155 0.94564 0.97262 0.82416 0.88958 1.45895 1.66791 1.14257 1.09051 1.14679 0.77387 0.85236 0.80631 1.90872 1.49670 1.14889 1.84609 1.20719 1.04272 1.00754 0.96880 1.22540 0.93662 0.96226 0.94547 1.17967 0.96127 0.94413 0.87952 1.21913 0.99717 1.02327 0.96009 1.21912 0.93000 1.02437 1.02630 1.21912 1.02817 0.92317 1.02854 1.23374 0.96622 1.00864 0.93767 1.23934 0.94736 0.96728 0.95211 1.68381 1.01760 1.32168 1.14690 1.22487 0.97778 0.95137 0.96850 1.19689 0.84856 0.84143 0.88107 1.90517 1.41128 1.46581 1.67646 1.41890 1.34460 1.36539 1.07636 1.19749 1.19713 1.21487 0.81731 0.87905 1.25254 0.95984 0.96235 1.00579 1.69618 1.22909 1.25570 1.36380 0.85804 0.78146 0.78065 0.82350 1.19235 1.20789 1.20796 1.23974 0.95260 1.02279 0.91007 0.92221 0.90895 0.92096 0.76144 0.91822 0.91072 0.91943 0.91797 0.91030 0.91822 0.91924 0.91075 0.91785 0.87536 0.91141 0.88669 0.89495 0.92407 0.77571 0.91982 0.89416 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.48 37.16 0.35 -1.13 16 2 C 0.15 1.49 2.35 -67.93 -0.16 1.33 16 3 H 0.09 1.09 7.37 -51.93 -0.38 0.71 16 4 N -0.71 -6.52 4.83 -56.24 -0.27 -6.79 16 5 C 0.63 7.55 7.61 -14.33 -0.11 7.44 16 6 O -0.52 -8.19 16.75 5.27 0.09 -8.10 16 7 C -0.22 -2.37 13.61 -38.84 -0.53 -2.90 16 8 C -0.07 -0.59 11.77 -37.12 -0.44 -1.03 16 9 C 0.04 0.20 0.95 -157.30 -0.15 0.05 16 10 C -0.14 -0.69 8.43 37.16 0.31 -0.37 16 11 C -0.14 -0.71 8.43 37.16 0.31 -0.39 16 12 C -0.14 -0.60 8.43 37.15 0.31 -0.29 16 13 C -0.13 -1.33 3.37 -89.68 -0.30 -1.63 16 14 C 0.02 0.33 7.51 -2.77 -0.02 0.31 16 15 N -0.45 -7.36 5.65 -239.75 -1.35 -8.71 16 16 C 0.01 0.17 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.85 7.83 -10.98 -0.09 10.77 16 18 O -0.58 -16.07 16.01 5.55 0.09 -15.98 16 19 N -0.57 -14.74 5.29 -10.96 -0.06 -14.80 16 20 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 21 H 0.10 3.07 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 23 N -0.90 -24.98 13.05 55.50 0.72 -24.25 16 24 Si 0.93 21.36 29.55 -169.99 -5.02 16.34 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.00 0.05 7.27 -2.77 -0.02 0.03 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 31 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.40 2.77 8.57 -40.82 -0.35 2.42 16 33 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 36 H 0.06 0.33 8.14 -51.93 -0.42 -0.09 16 37 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 38 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 39 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 40 H 0.07 0.20 8.14 -51.93 -0.42 -0.22 16 41 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 42 H 0.11 1.02 8.14 -51.93 -0.42 0.60 16 43 H 0.07 0.95 7.29 -51.93 -0.38 0.58 16 44 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.09 1.45 8.08 -51.93 -0.42 1.03 16 46 H 0.06 0.95 7.38 -51.93 -0.38 0.57 16 47 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 48 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 49 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 50 H 0.07 0.79 7.88 -51.93 -0.41 0.38 16 LS Contribution 422.01 15.07 6.36 6.36 Total: -1.00 -34.89 422.01 -8.73 -43.63 By element: Atomic # 1 Polarization: 16.61 SS G_CDS: -8.50 Total: 8.11 kcal Atomic # 6 Polarization: 5.00 SS G_CDS: -0.79 Total: 4.21 kcal Atomic # 7 Polarization: -53.60 SS G_CDS: -0.96 Total: -54.56 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: 0.18 Total: -24.08 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.34 kcal Total LS contribution 6.36 Total: 6.36 kcal Total: -34.89 -8.73 -43.63 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734115933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.683 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.789 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.058 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds