Wall clock time and date at job start Tue Mar 31 2020 18:52:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.47486 * 2 1 4 4 N 1.46500 * 109.46944 * 239.99569 * 2 1 3 5 5 C 1.34780 * 119.99944 * 85.00803 * 4 2 1 6 6 O 1.21612 * 119.99724 * 359.97438 * 5 4 2 7 7 C 1.43195 * 119.99888 * 179.97438 * 5 4 2 8 8 C 4.88629 * 107.70304 * 254.46188 * 2 1 3 9 9 C 6.32552 * 108.20733 * 251.15459 * 2 1 3 10 10 C 1.53000 * 109.47288 * 71.75108 * 9 8 7 11 11 C 1.52997 * 109.46584 * 191.74762 * 9 8 7 12 12 C 1.52994 * 109.47166 * 311.74779 * 9 8 7 13 13 C 1.53006 * 109.46623 * 119.99829 * 2 1 3 14 14 C 1.53932 * 113.73220 * 276.72462 * 13 2 1 15 15 N 1.47963 * 86.17824 * 221.92173 * 14 13 2 16 16 C 1.46900 * 110.99920 * 137.58603 * 15 14 13 17 17 C 1.50700 * 109.47417 * 90.63534 * 16 15 14 18 18 O 1.21291 * 120.00066 * 0.02562 * 17 16 15 19 19 N 1.34780 * 119.99987 * 179.97438 * 17 16 15 20 20 C 1.37102 * 119.99856 * 180.02562 * 19 17 16 21 21 H 1.08001 * 119.99865 * 0.02562 * 20 19 17 22 22 C 1.38946 * 119.99788 * 180.02562 * 20 19 17 23 23 N 1.31408 * 120.00367 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 119.99527 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.47508 * 0.02562 * 24 22 20 26 26 H 1.48507 * 109.47082 * 119.99819 * 24 22 20 27 27 H 1.48494 * 109.47158 * 239.99363 * 24 22 20 28 28 C 1.47956 * 90.76518 * 24.69157 * 15 14 13 29 29 H 1.09000 * 109.47486 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47362 * 300.00723 * 1 2 3 31 31 H 1.09002 * 109.46716 * 60.00082 * 1 2 3 32 32 H 0.96998 * 119.99878 * 265.00035 * 4 2 1 33 33 H 1.09000 * 109.46985 * 59.99404 * 10 9 8 34 34 H 1.08993 * 109.47003 * 179.97438 * 10 9 8 35 35 H 1.09001 * 109.46699 * 299.99981 * 10 9 8 36 36 H 1.09002 * 109.47490 * 60.00356 * 11 9 8 37 37 H 1.09001 * 109.47296 * 179.97438 * 11 9 8 38 38 H 1.08992 * 109.47522 * 300.00116 * 11 9 8 39 39 H 1.08997 * 109.47225 * 60.00804 * 12 9 8 40 40 H 1.09004 * 109.46955 * 180.02562 * 12 9 8 41 41 H 1.09002 * 109.47192 * 299.99818 * 12 9 8 42 42 H 1.09001 * 112.93489 * 48.43591 * 13 2 1 43 43 H 1.08997 * 113.76329 * 336.24011 * 14 13 2 44 44 H 1.08998 * 113.75871 * 107.60749 * 14 13 2 45 45 H 1.09003 * 109.47176 * 210.64391 * 16 15 14 46 46 H 1.09005 * 109.47269 * 330.63940 * 16 15 14 47 47 H 0.96997 * 119.99763 * 0.02562 * 19 17 16 48 48 H 0.96994 * 120.00180 * 179.97438 * 23 22 20 49 49 H 1.09002 * 113.76134 * 220.99069 * 28 15 14 50 50 H 1.08998 * 113.86013 * 89.63623 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1471 -0.0184 -2.3571 6 8 1.8576 1.1615 -2.4118 7 6 2.6249 -0.6934 -3.5261 8 6 3.0158 -1.2470 -4.4848 9 6 3.5064 -1.9409 -5.6867 10 6 2.6619 -1.5288 -6.8941 11 6 4.9680 -1.5619 -5.9334 12 6 3.3994 -3.4533 -5.4818 13 6 2.0399 -0.7213 1.2494 14 6 2.0908 0.1712 2.5025 15 7 3.3950 -0.4684 2.7839 16 6 4.3807 0.5226 3.2360 17 6 4.3309 0.6315 4.7382 18 8 3.5514 -0.0498 5.3702 19 7 5.1533 1.4852 5.3796 20 6 5.1084 1.5839 6.7463 21 1 4.4143 0.9773 7.3090 22 6 5.9559 2.4644 7.4075 23 7 6.8008 3.2022 6.7229 24 14 5.8941 2.5993 9.2696 25 1 4.8655 1.6686 9.7995 26 1 7.2204 2.2448 9.8359 27 1 5.5480 3.9913 9.6538 28 6 3.5750 -0.7786 1.3485 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3634 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 2.2489 -1.6319 -1.1525 33 1 2.7382 -0.4513 -7.0400 34 1 3.0255 -2.0423 -7.7841 35 1 1.6206 -1.7988 -6.7182 36 1 5.5698 -1.8555 -5.0733 37 1 5.3316 -2.0760 -6.8231 38 1 5.0443 -0.4844 -6.0794 39 1 2.3581 -3.7234 -5.3061 40 1 3.7631 -3.9672 -6.3716 41 1 4.0011 -3.7469 -4.6216 42 1 1.5535 -1.6829 1.4129 43 1 2.1625 1.2360 2.2808 44 1 1.3204 -0.0603 3.2381 45 1 5.3782 0.2100 2.9271 46 1 4.1505 1.4919 2.7937 47 1 5.7770 2.0298 4.8742 48 1 7.3921 3.8171 7.1844 49 1 3.9905 -1.7689 1.1619 50 1 4.0809 0.0073 0.7876 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734115933.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:52:11 Heat of formation + Delta-G solvation = -25.269986 kcal Electronic energy + Delta-G solvation = -27749.262268 eV Core-core repulsion = 23777.545840 eV Total energy + Delta-G solvation = -3971.716428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.64215 -40.59159 -39.56542 -38.47207 -36.49022 -35.90288 -33.67973 -33.29750 -32.22372 -30.65463 -28.21263 -28.18221 -27.47189 -27.12127 -25.96669 -25.02273 -22.70172 -21.79040 -21.02139 -20.94231 -19.92719 -19.36857 -17.89127 -17.57677 -16.98773 -16.77649 -16.57834 -16.35676 -16.20889 -15.86565 -15.58822 -15.23577 -15.17833 -15.14661 -14.82699 -14.22677 -14.07172 -13.72204 -13.54242 -13.48862 -13.35765 -13.30596 -13.03150 -12.92721 -12.74034 -12.61212 -12.49363 -12.42243 -12.30275 -12.25126 -12.13385 -12.00051 -11.89470 -11.63335 -11.51151 -11.48293 -11.31446 -11.22699 -10.39635 -10.28365 -10.02102 -9.65187 -8.47587 -5.96626 0.46272 1.22040 1.35784 1.40599 1.55269 1.94018 2.04481 2.27810 2.42879 2.75102 3.04803 3.18496 3.34238 3.43605 3.61987 3.94969 3.96196 3.96566 4.07302 4.14060 4.18659 4.27080 4.35202 4.38821 4.45248 4.48312 4.51684 4.72404 4.73942 4.75362 4.75560 4.81899 4.84267 4.94533 4.96674 4.97091 5.07462 5.16324 5.20938 5.27588 5.35077 5.36832 5.37812 5.39290 5.42121 5.88353 6.07006 6.16396 6.35814 6.59541 7.01089 7.12087 7.55352 8.11600 8.70209 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.019358 B = 0.001759 C = 0.001693 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1446.119486 B =15910.094014 C =16538.277752 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.157 3.843 3 H 0.073 0.927 4 N -0.692 5.692 5 C 0.635 3.365 6 O -0.571 6.571 7 C -0.267 4.267 8 C -0.040 4.040 9 C 0.030 3.970 10 C -0.142 4.142 11 C -0.142 4.142 12 C -0.140 4.140 13 C -0.099 4.099 14 C 0.015 3.985 15 N -0.480 5.480 16 C 0.023 3.977 17 C 0.443 3.557 18 O -0.617 6.617 19 N -0.577 5.577 20 C -0.333 4.333 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.270 1.270 28 C 0.010 3.990 29 H 0.076 0.924 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.418 0.582 33 H 0.053 0.947 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.060 0.940 37 H 0.094 0.906 38 H 0.053 0.947 39 H 0.061 0.939 40 H 0.091 0.909 41 H 0.062 0.938 42 H 0.124 0.876 43 H 0.072 0.928 44 H 0.080 0.920 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.106 0.894 50 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.353 -12.415 -29.084 32.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.052 3.948 3 H 0.092 0.908 4 N -0.343 5.343 5 C 0.423 3.577 6 O -0.451 6.451 7 C -0.270 4.270 8 C -0.043 4.043 9 C 0.030 3.970 10 C -0.199 4.199 11 C -0.199 4.199 12 C -0.197 4.197 13 C -0.118 4.118 14 C -0.115 4.115 15 N -0.203 5.203 16 C -0.109 4.109 17 C 0.230 3.770 18 O -0.502 6.502 19 N -0.215 5.215 20 C -0.463 4.463 21 H 0.096 0.904 22 C -0.214 4.214 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.118 4.118 29 H 0.095 0.905 30 H 0.094 0.906 31 H 0.066 0.934 32 H 0.255 0.745 33 H 0.072 0.928 34 H 0.113 0.887 35 H 0.078 0.922 36 H 0.079 0.921 37 H 0.113 0.887 38 H 0.072 0.928 39 H 0.080 0.920 40 H 0.110 0.890 41 H 0.081 0.919 42 H 0.142 0.858 43 H 0.090 0.910 44 H 0.098 0.902 45 H 0.123 0.877 46 H 0.093 0.907 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.124 0.876 50 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -6.878 -12.413 -28.087 31.469 hybrid contribution 0.542 1.211 0.556 1.438 sum -6.336 -11.203 -27.531 30.391 Atomic orbital electron populations 1.22120 0.93730 1.03377 1.02433 1.21008 0.95137 0.96297 0.82349 0.90835 1.45730 1.65712 1.14746 1.08092 1.14838 0.76707 0.84701 0.81426 1.90840 1.52014 1.16875 1.85402 1.20640 1.06213 1.02435 0.97712 1.23328 0.91776 0.94927 0.94260 1.18283 0.96653 0.95238 0.86863 1.21939 0.99548 1.02013 0.96437 1.21937 0.92297 1.02127 1.03584 1.21924 1.02926 0.90957 1.03861 1.23162 0.95901 1.00595 0.92121 1.23976 0.93468 0.97467 0.96553 1.68351 1.02152 1.31999 1.17752 1.22355 0.99599 0.96922 0.92034 1.20775 0.83148 0.82396 0.90683 1.90478 1.42488 1.47859 1.69416 1.41976 1.35138 1.37249 1.07119 1.19707 1.20696 1.22741 0.83120 0.90365 1.26060 0.95067 0.95254 1.05012 1.69679 1.22964 1.25563 1.38100 0.84851 0.78328 0.78271 0.76751 1.19777 1.19532 1.19568 1.24059 0.96294 1.03342 0.88089 0.90508 0.90596 0.93382 0.74474 0.92795 0.88731 0.92191 0.92107 0.88736 0.92784 0.92014 0.89022 0.91897 0.85823 0.91016 0.90165 0.87683 0.90677 0.77133 0.91318 0.87583 0.90794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.75 9.48 71.98 0.68 -2.06 16 2 C 0.16 2.96 2.35 44.99 0.11 3.06 16 3 H 0.07 1.73 7.37 -2.39 -0.02 1.72 16 4 N -0.69 -11.97 4.83 -450.11 -2.17 -14.15 16 5 C 0.64 15.16 7.61 85.49 0.65 15.81 16 6 O -0.57 -18.41 16.75 -4.07 -0.07 -18.48 16 7 C -0.27 -5.59 13.61 30.01 0.41 -5.18 16 8 C -0.04 -0.67 11.77 31.13 0.37 -0.30 16 9 C 0.03 0.28 0.95 -53.99 -0.05 0.23 16 10 C -0.14 -1.09 8.43 71.98 0.61 -0.48 16 11 C -0.14 -1.12 8.43 71.98 0.61 -0.51 16 12 C -0.14 -0.82 8.43 71.98 0.61 -0.22 16 13 C -0.10 -1.89 3.37 -10.15 -0.03 -1.93 16 14 C 0.01 0.41 7.51 86.40 0.65 1.05 16 15 N -0.48 -15.35 5.65 -912.44 -5.16 -20.51 16 16 C 0.02 0.81 5.28 85.56 0.45 1.26 16 17 C 0.44 21.90 7.83 87.66 0.69 22.59 16 18 O -0.62 -35.45 16.01 -3.06 -0.05 -35.50 16 19 N -0.58 -30.62 5.29 -306.98 -1.62 -32.24 16 20 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 21 H 0.08 4.86 7.16 -2.91 -0.02 4.84 16 22 C -0.01 -0.79 5.50 84.93 0.47 -0.32 16 23 N -0.92 -50.78 13.05 21.66 0.28 -50.50 16 24 Si 0.99 43.76 29.55 68.60 2.03 45.79 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 26 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 27 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 28 C 0.01 0.23 7.27 86.41 0.63 0.86 16 29 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 30 H 0.08 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.42 4.90 8.57 -92.71 -0.79 4.11 16 33 H 0.05 0.52 8.14 -2.39 -0.02 0.51 16 34 H 0.09 0.30 8.14 -2.39 -0.02 0.28 16 35 H 0.06 0.50 8.14 -2.39 -0.02 0.48 16 36 H 0.06 0.52 8.14 -2.39 -0.02 0.50 16 37 H 0.09 0.32 8.14 -2.39 -0.02 0.30 16 38 H 0.05 0.53 8.14 -2.39 -0.02 0.51 16 39 H 0.06 0.39 8.14 -2.39 -0.02 0.37 16 40 H 0.09 0.19 8.14 -2.38 -0.02 0.17 16 41 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.12 2.04 8.14 -2.39 -0.02 2.02 16 43 H 0.07 1.94 7.29 -2.39 -0.02 1.92 16 44 H 0.08 2.43 8.14 -2.39 -0.02 2.41 16 45 H 0.11 3.36 8.08 -2.39 -0.02 3.34 16 46 H 0.08 2.42 7.38 -2.38 -0.02 2.41 16 47 H 0.40 19.93 7.90 -92.71 -0.73 19.20 16 48 H 0.28 14.24 8.31 -92.71 -0.77 13.47 16 49 H 0.11 1.95 8.14 -2.39 -0.02 1.93 16 50 H 0.07 1.56 7.88 -2.39 -0.02 1.54 16 Total: -1.00 -77.71 422.01 0.31 -77.40 By element: Atomic # 1 Polarization: 33.52 SS G_CDS: -0.58 Total: 32.94 kcal Atomic # 6 Polarization: 7.60 SS G_CDS: 7.64 Total: 15.24 kcal Atomic # 7 Polarization: -108.73 SS G_CDS: -8.67 Total: -117.40 kcal Atomic # 8 Polarization: -53.86 SS G_CDS: -0.12 Total: -53.98 kcal Atomic # 14 Polarization: 43.76 SS G_CDS: 2.03 Total: 45.79 kcal Total: -77.71 0.31 -77.40 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734115933.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.134 kcal (2) G-P(sol) polarization free energy of solvation -77.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.308 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.270 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds