Wall clock time and date at job start Tue Mar 31 2020 19:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 5 5 C 1.36936 * 119.99910 * 84.99534 * 4 2 1 6 6 H 1.07996 * 119.99948 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99722 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00278 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99762 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47350 * 89.99957 * 9 7 5 11 11 H 1.48498 * 109.46905 * 210.00287 * 9 7 5 12 12 H 1.48505 * 109.47191 * 329.99909 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 14 14 H 1.09001 * 109.51500 * 300.10185 * 13 2 1 15 15 C 1.53297 * 109.51309 * 179.97438 * 13 2 1 16 16 N 1.47149 * 108.38647 * 187.77572 * 15 13 2 17 17 C 1.34780 * 120.98220 * 230.56226 * 16 15 13 18 18 O 1.21280 * 119.99872 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99929 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46711 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46692 * 179.97438 * 20 19 17 22 22 N 1.46496 * 109.47031 * 179.97438 * 21 20 19 23 23 C 1.36348 * 125.63874 * 269.69413 * 22 21 20 24 24 C 1.34852 * 108.21961 * 179.82917 * 23 22 21 25 25 C 1.40894 * 107.41684 * 0.42357 * 24 23 22 26 26 C 1.34851 * 107.41774 * 359.73979 * 25 24 23 27 27 C 1.47152 * 118.03662 * 50.53524 * 16 15 13 28 28 C 1.53288 * 108.38538 * 309.46916 * 27 16 15 29 29 O 1.42964 * 109.22453 * 52.29883 * 28 27 16 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00110 * 265.00363 * 4 2 1 34 34 H 0.96997 * 119.99556 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.68192 * 307.50307 * 15 13 2 36 36 H 1.09007 * 109.67714 * 68.01458 * 15 13 2 37 37 H 1.08996 * 109.46987 * 299.99507 * 19 17 16 38 38 H 1.08997 * 109.46987 * 60.00427 * 19 17 16 39 39 H 1.08996 * 109.47128 * 299.99587 * 20 19 17 40 40 H 1.08999 * 109.47345 * 59.99910 * 20 19 17 41 41 H 1.09001 * 109.47406 * 299.99907 * 21 20 19 42 42 H 1.08999 * 109.47289 * 59.99889 * 21 20 19 43 43 H 1.07998 * 125.88841 * 359.96118 * 23 22 21 44 44 H 1.07996 * 126.29225 * 180.16469 * 24 23 22 45 45 H 1.07996 * 126.29090 * 179.72892 * 25 24 23 46 46 H 1.08000 * 125.89509 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.67769 * 69.19322 * 27 16 15 48 48 H 1.09002 * 109.68145 * 189.73792 * 27 16 15 49 49 H 1.09002 * 109.51088 * 172.22747 * 28 27 16 50 50 H 1.09004 * 109.51274 * 292.32419 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4241 7 6 2.6112 -0.6620 -3.5093 8 7 2.9234 -1.9393 -3.4505 9 14 2.7902 0.2700 -5.1183 10 1 4.1527 0.8542 -5.2031 11 1 2.5790 -0.6610 -6.2557 12 1 1.7808 1.3579 -5.1751 13 6 2.0401 -0.7212 1.2492 14 1 1.6756 -0.2090 2.1397 15 6 3.5730 -0.7223 1.2498 16 7 4.0361 -1.5779 2.3539 17 6 4.9514 -1.1345 3.2383 18 8 5.4064 -0.0155 3.1305 19 6 5.4096 -2.0293 4.3610 20 6 6.4432 -1.2899 5.2130 21 6 6.9078 -2.1981 6.3532 22 7 7.8979 -1.4904 7.1687 23 6 9.2468 -1.5046 6.9705 24 6 9.8203 -0.7350 7.9178 25 6 8.7884 -0.2349 8.7366 26 6 7.6233 -0.7134 8.2549 27 6 3.4698 -2.9316 2.4642 28 6 1.9420 -2.8229 2.4044 29 8 1.5685 -2.0709 1.2473 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1527 34 1 3.2460 -2.3967 -4.2427 35 1 3.9402 -1.1154 0.3019 36 1 3.9408 0.2938 1.3930 37 1 4.5551 -2.3013 4.9805 38 1 5.8596 -2.9313 3.9461 39 1 7.2976 -1.0182 4.5932 40 1 5.9937 -0.3876 5.6278 41 1 6.0532 -2.4695 6.9730 42 1 7.3572 -3.1006 5.9388 43 1 9.7662 -2.0383 6.1884 44 1 10.8767 -0.5412 8.0309 45 1 8.9086 0.4124 9.5926 46 1 6.6417 -0.5149 8.6594 47 1 3.8267 -3.5472 1.6386 48 1 3.7693 -3.3787 3.4122 49 1 1.5080 -3.8211 2.3455 50 1 1.5774 -2.3197 3.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734184785.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:28 Heat of formation + Delta-G solvation = -15.007405 kcal Electronic energy + Delta-G solvation = -28993.972106 eV Core-core repulsion = 25022.700697 eV Total energy + Delta-G solvation = -3971.271409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -41.31523 -40.35053 -38.50818 -35.52982 -35.29640 -34.53788 -32.36055 -31.63649 -30.22108 -28.96478 -28.41412 -28.14463 -26.48525 -24.21403 -23.51466 -22.99075 -21.79269 -20.66446 -20.18500 -19.75915 -19.09282 -17.82820 -17.32865 -17.03970 -16.31632 -16.25469 -15.64887 -15.25398 -14.87235 -14.75508 -14.63297 -14.28588 -13.95850 -13.91357 -13.43764 -13.39237 -13.24072 -13.05422 -12.59832 -12.51758 -12.37850 -12.25894 -12.18765 -12.05811 -11.90993 -11.70365 -11.39867 -11.24143 -11.18629 -10.85874 -10.79001 -10.50915 -10.31595 -10.07788 -9.90602 -9.71837 -9.58566 -8.93143 -8.81531 -8.41357 -8.35201 -6.93508 -5.74850 -3.03166 2.07056 2.56650 2.64954 2.88273 2.95123 3.44587 3.50122 3.51200 3.93522 4.20341 4.28065 4.50455 4.60121 4.76182 4.78172 4.79979 4.84486 4.90345 4.99757 5.02034 5.07429 5.15551 5.28713 5.35434 5.36719 5.44924 5.47724 5.60014 5.62075 5.65750 5.75420 5.83455 5.86544 5.98986 6.09855 6.12656 6.19662 6.32447 6.39297 6.53142 6.64848 6.76784 6.80071 7.03544 7.11870 7.17443 7.36272 7.43927 7.71771 8.11834 8.43546 9.55907 10.12615 10.49926 11.47405 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.002151 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.017942 B =13013.292041 C =13763.486244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.182 3.818 3 H 0.060 0.940 4 N -0.717 5.717 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.905 3.095 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.079 3.921 14 H 0.054 0.946 15 C 0.085 3.915 16 N -0.613 5.613 17 C 0.512 3.488 18 O -0.540 6.540 19 C -0.137 4.137 20 C -0.120 4.120 21 C 0.105 3.895 22 N -0.447 5.447 23 C -0.015 4.015 24 C -0.205 4.205 25 C -0.204 4.204 26 C -0.016 4.016 27 C 0.071 3.929 28 C 0.048 3.952 29 O -0.358 6.358 30 H 0.032 0.968 31 H 0.054 0.946 32 H 0.055 0.945 33 H 0.390 0.610 34 H 0.254 0.746 35 H 0.097 0.903 36 H 0.095 0.905 37 H 0.094 0.906 38 H 0.096 0.904 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.159 0.841 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.159 0.841 47 H 0.083 0.917 48 H 0.088 0.912 49 H 0.103 0.897 50 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.115 -4.740 23.783 24.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.071 3.929 3 H 0.078 0.922 4 N -0.359 5.359 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.736 3.264 10 H -0.218 1.218 11 H -0.219 1.219 12 H -0.208 1.208 13 C 0.019 3.981 14 H 0.072 0.928 15 C -0.037 4.037 16 N -0.347 5.347 17 C 0.300 3.700 18 O -0.417 6.417 19 C -0.177 4.177 20 C -0.158 4.158 21 C -0.017 4.017 22 N -0.122 5.122 23 C -0.145 4.145 24 C -0.229 4.229 25 C -0.229 4.229 26 C -0.146 4.146 27 C -0.053 4.053 28 C -0.031 4.031 29 O -0.276 6.276 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.225 0.775 34 H 0.064 0.936 35 H 0.115 0.885 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.114 0.886 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.177 0.823 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.176 0.824 47 H 0.101 0.899 48 H 0.106 0.894 49 H 0.121 0.879 50 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 5.011 -4.285 23.211 24.129 hybrid contribution 0.252 0.118 -0.768 0.817 sum 5.263 -4.167 22.443 23.425 Atomic orbital electron populations 1.22351 0.98510 1.01544 0.99641 1.20263 0.92771 0.94657 0.85199 0.92247 1.42375 1.77668 1.10985 1.04891 1.19244 1.36498 0.93807 0.87413 0.91210 1.24722 1.02254 0.95932 0.97967 1.69672 1.50869 1.08570 1.28773 0.86220 0.77764 0.78593 0.83789 1.21793 1.21870 1.20812 1.22920 0.92275 0.83303 0.99575 0.92810 1.22441 0.94892 0.96559 0.89796 1.48254 1.41760 1.15483 1.29164 1.20510 0.78912 0.87768 0.82774 1.90720 1.55998 1.20645 1.74382 1.21594 1.00315 0.99508 0.96318 1.21716 0.99494 0.98725 0.95913 1.21898 0.91804 0.95148 0.92863 1.44135 1.06282 1.38350 1.23440 1.21851 0.82607 1.06529 1.03481 1.20903 0.99079 1.04081 0.98866 1.20899 0.92276 1.06495 1.03244 1.21831 0.99844 1.00627 0.92275 1.22497 0.95547 0.84037 1.03197 1.22879 0.92934 0.97606 0.89642 1.88119 1.75273 1.23572 1.40605 0.94884 0.92731 0.92557 0.77539 0.93619 0.88460 0.88641 0.88728 0.88564 0.90237 0.90339 0.89238 0.89174 0.82342 0.84915 0.84932 0.82396 0.89909 0.89399 0.87923 0.93358 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.94 9.35 37.16 0.35 -2.59 16 2 C 0.18 3.57 2.73 -67.93 -0.19 3.39 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -17.52 4.29 -53.42 -0.23 -17.75 16 5 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 6 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 7 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 8 N -0.93 -27.81 13.06 55.49 0.72 -27.09 16 9 Si 0.91 22.39 29.55 -169.99 -5.02 17.37 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 12 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 13 C 0.08 1.31 2.53 -26.58 -0.07 1.24 16 14 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 15 C 0.08 1.45 5.86 -3.53 -0.02 1.43 16 16 N -0.61 -8.37 3.02 -172.28 -0.52 -8.89 16 17 C 0.51 6.85 7.71 -10.98 -0.08 6.77 16 18 O -0.54 -9.52 15.45 5.56 0.09 -9.44 16 19 C -0.14 -1.08 4.07 -27.88 -0.11 -1.19 16 20 C -0.12 -1.02 4.83 -26.73 -0.13 -1.15 16 21 C 0.10 0.66 6.09 -4.04 -0.02 0.63 16 22 N -0.45 -3.96 2.75 -117.13 -0.32 -4.28 16 23 C -0.01 -0.14 11.43 -16.75 -0.19 -0.33 16 24 C -0.20 -2.03 10.86 -39.78 -0.43 -2.46 16 25 C -0.20 -2.01 10.86 -39.78 -0.43 -2.44 16 26 C -0.02 -0.15 11.43 -16.75 -0.19 -0.34 16 27 C 0.07 0.73 6.54 -3.54 -0.02 0.71 16 28 C 0.05 0.53 6.98 37.31 0.26 0.79 16 29 O -0.36 -5.84 9.22 -35.23 -0.32 -6.16 16 30 H 0.03 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.06 1.08 7.69 -51.93 -0.40 0.68 16 33 H 0.39 10.27 7.20 -40.82 -0.29 9.98 16 34 H 0.25 7.39 8.31 -40.82 -0.34 7.05 16 35 H 0.10 1.98 7.27 -51.93 -0.38 1.60 16 36 H 0.10 1.74 7.08 -51.93 -0.37 1.37 16 37 H 0.09 0.52 7.66 -51.93 -0.40 0.12 16 38 H 0.10 0.58 8.01 -51.93 -0.42 0.16 16 39 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 40 H 0.08 0.81 8.10 -51.93 -0.42 0.39 16 41 H 0.09 0.40 8.14 -51.93 -0.42 -0.02 16 42 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 43 H 0.16 1.14 8.06 -52.49 -0.42 0.71 16 44 H 0.13 1.11 8.06 -52.49 -0.42 0.69 16 45 H 0.13 1.09 8.06 -52.49 -0.42 0.67 16 46 H 0.16 1.08 8.06 -52.49 -0.42 0.65 16 47 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 48 H 0.09 0.56 6.05 -51.93 -0.31 0.25 16 49 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 50 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 LS Contribution 404.13 15.07 6.09 6.09 Total: -1.00 -34.31 404.13 -9.50 -43.81 By element: Atomic # 1 Polarization: 17.45 SS G_CDS: -8.45 Total: 9.00 kcal Atomic # 6 Polarization: -1.13 SS G_CDS: -1.53 Total: -2.66 kcal Atomic # 7 Polarization: -57.67 SS G_CDS: -0.35 Total: -58.02 kcal Atomic # 8 Polarization: -15.36 SS G_CDS: -0.24 Total: -15.60 kcal Atomic # 14 Polarization: 22.39 SS G_CDS: -5.02 Total: 17.37 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -34.31 -9.50 -43.81 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734184785.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.804 kcal (2) G-P(sol) polarization free energy of solvation -34.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.508 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds