Wall clock time and date at job start Tue Mar 31 2020 19:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 N 1.46500 * 109.46998 * 240.00054 * 2 1 3 5 5 C 1.36936 * 119.99910 * 84.99534 * 4 2 1 6 6 H 1.07996 * 119.99948 * 0.02562 * 5 4 2 7 7 C 1.38815 * 119.99722 * 180.02562 * 5 4 2 8 8 N 1.31621 * 120.00278 * 0.02562 * 7 5 4 9 9 Si 1.86801 * 119.99762 * 180.02562 * 7 5 4 10 10 H 1.48493 * 109.47350 * 89.99957 * 9 7 5 11 11 H 1.48498 * 109.46905 * 210.00287 * 9 7 5 12 12 H 1.48505 * 109.47191 * 329.99909 * 9 7 5 13 13 C 1.52997 * 109.47164 * 120.00004 * 2 1 3 14 14 H 1.09001 * 109.51500 * 300.10185 * 13 2 1 15 15 C 1.53297 * 109.51309 * 179.97438 * 13 2 1 16 16 N 1.47149 * 108.38647 * 187.77572 * 15 13 2 17 17 C 1.34780 * 120.98220 * 230.56226 * 16 15 13 18 18 O 1.21280 * 119.99872 * 359.97438 * 17 16 15 19 19 C 1.50700 * 119.99929 * 179.97438 * 17 16 15 20 20 C 1.53007 * 109.46711 * 179.97438 * 19 17 16 21 21 C 1.53002 * 109.46692 * 179.97438 * 20 19 17 22 22 N 1.46496 * 109.47031 * 179.97438 * 21 20 19 23 23 C 1.36348 * 125.63874 * 269.69413 * 22 21 20 24 24 C 1.34852 * 108.21961 * 179.82917 * 23 22 21 25 25 C 1.40894 * 107.41684 * 0.42357 * 24 23 22 26 26 C 1.34851 * 107.41774 * 359.73979 * 25 24 23 27 27 C 1.47152 * 118.03662 * 50.53524 * 16 15 13 28 28 C 1.53288 * 108.38538 * 309.46916 * 27 16 15 29 29 O 1.42964 * 109.22453 * 52.29883 * 28 27 16 30 30 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 31 31 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 32 32 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 33 33 H 0.96997 * 120.00110 * 265.00363 * 4 2 1 34 34 H 0.96997 * 119.99556 * 179.97438 * 8 7 5 35 35 H 1.08993 * 109.68192 * 307.50307 * 15 13 2 36 36 H 1.09007 * 109.67714 * 68.01458 * 15 13 2 37 37 H 1.08996 * 109.46987 * 299.99507 * 19 17 16 38 38 H 1.08997 * 109.46987 * 60.00427 * 19 17 16 39 39 H 1.08996 * 109.47128 * 299.99587 * 20 19 17 40 40 H 1.08999 * 109.47345 * 59.99910 * 20 19 17 41 41 H 1.09001 * 109.47406 * 299.99907 * 21 20 19 42 42 H 1.08999 * 109.47289 * 59.99889 * 21 20 19 43 43 H 1.07998 * 125.88841 * 359.96118 * 23 22 21 44 44 H 1.07996 * 126.29225 * 180.16469 * 24 23 22 45 45 H 1.07996 * 126.29090 * 179.72892 * 25 24 23 46 46 H 1.08000 * 125.89509 * 180.02562 * 26 25 24 47 47 H 1.08997 * 109.67769 * 69.19322 * 27 16 15 48 48 H 1.09002 * 109.68145 * 189.73792 * 27 16 15 49 49 H 1.09002 * 109.51088 * 172.22747 * 28 27 16 50 50 H 1.09004 * 109.51274 * 292.32419 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6906 -1.1962 5 6 2.1490 -0.0075 -2.3758 6 1 1.8925 1.0405 -2.4241 7 6 2.6112 -0.6620 -3.5093 8 7 2.9234 -1.9393 -3.4505 9 14 2.7902 0.2700 -5.1183 10 1 4.1527 0.8542 -5.2031 11 1 2.5790 -0.6610 -6.2557 12 1 1.7808 1.3579 -5.1751 13 6 2.0401 -0.7212 1.2492 14 1 1.6756 -0.2090 2.1397 15 6 3.5730 -0.7223 1.2498 16 7 4.0361 -1.5779 2.3539 17 6 4.9514 -1.1345 3.2383 18 8 5.4064 -0.0155 3.1305 19 6 5.4096 -2.0293 4.3610 20 6 6.4432 -1.2899 5.2130 21 6 6.9078 -2.1981 6.3532 22 7 7.8979 -1.4904 7.1687 23 6 9.2468 -1.5046 6.9705 24 6 9.8203 -0.7350 7.9178 25 6 8.7884 -0.2349 8.7366 26 6 7.6233 -0.7134 8.2549 27 6 3.4698 -2.9316 2.4642 28 6 1.9420 -2.8229 2.4044 29 8 1.5685 -2.0709 1.2473 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3633 -1.0277 -0.0005 33 1 2.2490 -1.6317 -1.1527 34 1 3.2460 -2.3967 -4.2427 35 1 3.9402 -1.1154 0.3019 36 1 3.9408 0.2938 1.3930 37 1 4.5551 -2.3013 4.9805 38 1 5.8596 -2.9313 3.9461 39 1 7.2976 -1.0182 4.5932 40 1 5.9937 -0.3876 5.6278 41 1 6.0532 -2.4695 6.9730 42 1 7.3572 -3.1006 5.9388 43 1 9.7662 -2.0383 6.1884 44 1 10.8767 -0.5412 8.0309 45 1 8.9086 0.4124 9.5926 46 1 6.6417 -0.5149 8.6594 47 1 3.8267 -3.5472 1.6386 48 1 3.7693 -3.3787 3.4122 49 1 1.5080 -3.8211 2.3455 50 1 1.5774 -2.3197 3.2999 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734184785.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:27 Heat of formation + Delta-G solvation = -36.555664 kcal Electronic energy + Delta-G solvation = -28994.906509 eV Core-core repulsion = 25022.700697 eV Total energy + Delta-G solvation = -3972.205812 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -41.95970 -41.43758 -39.68821 -37.09956 -35.96927 -35.75909 -34.18002 -32.46214 -31.53860 -30.14344 -29.62040 -29.15483 -27.34437 -25.85928 -24.95238 -23.90331 -22.75950 -21.33072 -21.25391 -20.80893 -20.09851 -19.32658 -18.58530 -17.94413 -17.56855 -17.12608 -16.81661 -16.49505 -16.07899 -15.96127 -15.60718 -15.43278 -15.12229 -15.01808 -14.68326 -14.61904 -14.18310 -14.09327 -13.98505 -13.52118 -13.30562 -13.24324 -13.11378 -12.93599 -12.84422 -12.79092 -12.74262 -12.53755 -12.50079 -12.46829 -12.18289 -11.82667 -11.79174 -11.69451 -11.51281 -11.09305 -10.95729 -10.81779 -9.59087 -9.48787 -9.03149 -8.95669 -7.91198 -5.18039 1.39505 1.46666 1.47802 1.55738 1.56058 1.82368 2.16967 2.19138 2.56641 2.82258 3.41462 3.42531 3.71058 3.79686 3.85954 3.93825 3.98422 4.02335 4.19044 4.21952 4.26159 4.30832 4.34142 4.37164 4.41921 4.47455 4.55622 4.62584 4.63217 4.71883 4.79589 4.81194 4.85656 4.88105 4.98501 5.03614 5.08732 5.18705 5.21317 5.34159 5.41880 5.46270 5.52687 5.59825 6.11737 6.27477 6.33486 6.36352 6.36476 6.57773 7.09027 7.37967 8.14096 8.39704 9.31950 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.017312 B = 0.002151 C = 0.002034 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1617.017942 B =13013.292041 C =13763.486244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.171 3.829 3 H 0.055 0.945 4 N -0.725 5.725 5 C -0.235 4.235 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.966 5.966 9 Si 0.967 3.033 10 H -0.291 1.291 11 H -0.297 1.297 12 H -0.271 1.271 13 C 0.095 3.905 14 H 0.076 0.924 15 C 0.094 3.906 16 N -0.614 5.614 17 C 0.504 3.496 18 O -0.594 6.594 19 C -0.124 4.124 20 C -0.112 4.112 21 C 0.107 3.893 22 N -0.451 5.451 23 C -0.027 4.027 24 C -0.229 4.229 25 C -0.230 4.230 26 C -0.023 4.023 27 C 0.069 3.931 28 C 0.039 3.961 29 O -0.386 6.386 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.046 0.954 33 H 0.378 0.622 34 H 0.249 0.751 35 H 0.055 0.945 36 H 0.074 0.926 37 H 0.136 0.864 38 H 0.126 0.874 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.118 0.882 42 H 0.113 0.887 43 H 0.176 0.824 44 H 0.138 0.862 45 H 0.140 0.860 46 H 0.180 0.820 47 H 0.070 0.930 48 H 0.141 0.859 49 H 0.128 0.872 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.040 -6.103 26.059 27.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.062 3.938 3 H 0.073 0.927 4 N -0.366 5.366 5 C -0.367 4.367 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.617 5.617 9 Si 0.797 3.203 10 H -0.219 1.219 11 H -0.223 1.223 12 H -0.196 1.196 13 C 0.036 3.964 14 H 0.094 0.906 15 C -0.030 4.030 16 N -0.347 5.347 17 C 0.295 3.705 18 O -0.474 6.474 19 C -0.163 4.163 20 C -0.151 4.151 21 C -0.013 4.013 22 N -0.126 5.126 23 C -0.157 4.157 24 C -0.254 4.254 25 C -0.254 4.254 26 C -0.153 4.153 27 C -0.053 4.053 28 C -0.038 4.038 29 O -0.305 6.305 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.065 0.935 33 H 0.211 0.789 34 H 0.057 0.943 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.154 0.846 38 H 0.144 0.856 39 H 0.068 0.932 40 H 0.074 0.926 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.193 0.807 44 H 0.156 0.844 45 H 0.158 0.842 46 H 0.198 0.802 47 H 0.088 0.912 48 H 0.159 0.841 49 H 0.146 0.854 50 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 3.901 -5.648 25.530 26.437 hybrid contribution 0.585 0.568 -1.380 1.603 sum 4.486 -5.080 24.150 25.083 Atomic orbital electron populations 1.22165 0.96929 1.01166 1.00486 1.20516 0.93746 0.94538 0.85042 0.92692 1.42466 1.77990 1.10472 1.05669 1.19614 1.34589 0.94053 0.88445 0.90837 1.25471 1.03313 0.96857 1.01156 1.69823 1.52752 1.10003 1.29137 0.85226 0.77671 0.77499 0.79900 1.21869 1.22328 1.19560 1.22556 0.91383 0.84086 0.98363 0.90625 1.21987 0.95518 0.95947 0.89548 1.48357 1.41979 1.16343 1.28021 1.21606 0.77707 0.87805 0.83423 1.90701 1.57600 1.23357 1.75785 1.21654 1.01570 0.98711 0.94404 1.21588 0.98467 0.98701 0.96333 1.22064 0.92409 0.94716 0.92152 1.44363 1.06513 1.38251 1.23438 1.22214 0.83258 1.06505 1.03687 1.21191 0.99722 1.04868 0.99615 1.21193 0.92884 1.07337 1.04008 1.22247 1.00574 1.00187 0.92289 1.22763 0.94922 0.82035 1.05549 1.23261 0.93603 0.98341 0.88605 1.88070 1.75617 1.23292 1.43491 0.91417 0.94426 0.93455 0.78934 0.94265 0.92677 0.90728 0.84617 0.85567 0.93237 0.92565 0.86370 0.86927 0.80685 0.84392 0.84247 0.80245 0.91177 0.84079 0.85439 0.91212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.27 9.35 71.98 0.67 -4.60 16 2 C 0.17 6.75 2.73 44.99 0.12 6.87 16 3 H 0.06 2.20 8.08 -2.39 -0.02 2.18 16 4 N -0.72 -36.41 4.29 -322.93 -1.38 -37.80 16 5 C -0.23 -13.08 9.93 84.03 0.83 -12.25 16 6 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 7 C -0.08 -4.39 5.50 84.86 0.47 -3.92 16 8 N -0.97 -59.44 13.06 21.65 0.28 -59.15 16 9 Si 0.97 46.93 29.55 68.60 2.03 48.96 16 10 H -0.29 -14.03 7.11 99.48 0.71 -13.32 16 11 H -0.30 -14.48 7.11 99.48 0.71 -13.77 16 12 H -0.27 -12.45 7.11 99.48 0.71 -11.74 16 13 C 0.10 3.12 2.53 30.69 0.08 3.19 16 14 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 15 C 0.09 3.29 5.86 86.35 0.51 3.80 16 16 N -0.61 -15.94 3.02 -817.37 -2.47 -18.41 16 17 C 0.50 12.74 7.71 87.66 0.68 13.41 16 18 O -0.59 -21.34 15.45 -3.03 -0.05 -21.39 16 19 C -0.12 -1.45 4.07 29.85 0.12 -1.33 16 20 C -0.11 -1.66 4.83 30.60 0.15 -1.51 16 21 C 0.11 0.95 6.09 86.38 0.53 1.47 16 22 N -0.45 -7.08 2.75 -524.47 -1.44 -8.52 16 23 C -0.03 -0.47 11.43 83.21 0.95 0.48 16 24 C -0.23 -4.51 10.86 22.14 0.24 -4.27 16 25 C -0.23 -4.42 10.86 22.14 0.24 -4.18 16 26 C -0.02 -0.38 11.43 83.21 0.95 0.57 16 27 C 0.07 1.20 6.54 86.35 0.56 1.76 16 28 C 0.04 0.73 6.98 72.08 0.50 1.24 16 29 O -0.39 -12.06 9.22 -148.98 -1.37 -13.44 16 30 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.04 1.44 8.14 -2.39 -0.02 1.42 16 32 H 0.05 1.76 7.69 -2.39 -0.02 1.75 16 33 H 0.38 20.65 7.20 -92.71 -0.67 19.98 16 34 H 0.25 14.89 8.31 -92.71 -0.77 14.12 16 35 H 0.05 2.39 7.27 -2.39 -0.02 2.37 16 36 H 0.07 2.87 7.08 -2.38 -0.02 2.86 16 37 H 0.14 0.58 7.66 -2.39 -0.02 0.56 16 38 H 0.13 0.84 8.01 -2.39 -0.02 0.82 16 39 H 0.05 1.03 8.10 -2.39 -0.02 1.01 16 40 H 0.06 1.09 8.10 -2.39 -0.02 1.07 16 41 H 0.12 0.43 8.14 -2.39 -0.02 0.41 16 42 H 0.11 0.54 8.14 -2.39 -0.02 0.52 16 43 H 0.18 2.28 8.06 -2.91 -0.02 2.26 16 44 H 0.14 2.36 8.06 -2.91 -0.02 2.33 16 45 H 0.14 2.29 8.06 -2.91 -0.02 2.26 16 46 H 0.18 2.03 8.06 -2.91 -0.02 2.00 16 47 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 48 H 0.14 0.93 6.05 -2.39 -0.01 0.92 16 49 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 50 H 0.07 1.06 8.14 -2.38 -0.02 1.04 16 Total: -1.00 -80.28 404.13 3.45 -76.83 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: 0.25 Total: 32.19 kcal Atomic # 6 Polarization: -6.88 SS G_CDS: 7.60 Total: 0.73 kcal Atomic # 7 Polarization: -118.87 SS G_CDS: -5.01 Total: -123.88 kcal Atomic # 8 Polarization: -33.41 SS G_CDS: -1.42 Total: -34.83 kcal Atomic # 14 Polarization: 46.93 SS G_CDS: 2.03 Total: 48.96 kcal Total: -80.28 3.45 -76.83 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734184785.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.275 kcal (2) G-P(sol) polarization free energy of solvation -80.278 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.003 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds