Wall clock time and date at job start Tue Mar 31 2020 19:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47184 * 2 1 4 4 N 1.46496 * 109.47056 * 239.99355 * 2 1 3 5 5 C 1.36942 * 119.99845 * 85.00744 * 4 2 1 6 6 H 1.07997 * 119.99669 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00056 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99707 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00338 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47153 * 59.99248 * 9 7 5 11 11 H 1.48493 * 109.47492 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47005 * 299.99752 * 9 7 5 13 13 C 1.53007 * 109.46856 * 119.99745 * 2 1 3 14 14 H 1.08993 * 109.51153 * 175.10204 * 13 2 1 15 15 C 1.53299 * 109.51018 * 295.25316 * 13 2 1 16 16 N 1.47227 * 108.40126 * 172.23138 * 15 13 2 17 17 C 1.34777 * 121.02629 * 129.46516 * 16 15 13 18 18 O 1.21277 * 120.00474 * 0.02562 * 17 16 15 19 19 C 1.50708 * 119.99596 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47017 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47287 * 179.97438 * 20 19 17 22 22 N 1.46494 * 109.47452 * 180.02562 * 21 20 19 23 23 C 1.36342 * 125.63764 * 269.69796 * 22 21 20 24 24 C 1.34852 * 108.22242 * 179.82937 * 23 22 21 25 25 C 1.40898 * 107.41270 * 0.42279 * 24 23 22 26 26 C 1.34848 * 107.41958 * 359.73661 * 25 24 23 27 27 C 1.47150 * 117.98768 * 309.48190 * 16 15 13 28 28 C 1.53297 * 108.41463 * 50.52570 * 27 16 15 29 29 O 1.42959 * 109.51273 * 55.00009 * 13 2 1 30 30 H 1.09004 * 109.46513 * 60.00608 * 1 2 3 31 31 H 1.08997 * 109.47184 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47571 * 300.00308 * 1 2 3 33 33 H 0.97006 * 120.00316 * 264.99851 * 4 2 1 34 34 H 0.97009 * 120.00023 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68120 * 291.95342 * 15 13 2 36 36 H 1.08998 * 109.67871 * 52.50274 * 15 13 2 37 37 H 1.09001 * 109.47245 * 300.00148 * 19 17 16 38 38 H 1.09002 * 109.46954 * 60.00143 * 19 17 16 39 39 H 1.08992 * 109.47555 * 300.00651 * 20 19 17 40 40 H 1.09002 * 109.46721 * 60.00515 * 20 19 17 41 41 H 1.09001 * 109.47121 * 300.00753 * 21 20 19 42 42 H 1.09002 * 109.46808 * 60.00583 * 21 20 19 43 43 H 1.08001 * 125.88968 * 359.95764 * 23 22 21 44 44 H 1.07998 * 126.29463 * 180.16063 * 24 23 22 45 45 H 1.08000 * 126.28702 * 179.73372 * 25 24 23 46 46 H 1.08000 * 125.89233 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.68441 * 290.77961 * 27 16 15 48 48 H 1.08999 * 109.68020 * 170.26303 * 27 16 15 49 49 H 1.08996 * 109.51604 * 67.59956 * 28 27 16 50 50 H 1.08994 * 109.51066 * 187.70414 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1493 -0.0076 -2.3757 6 1 1.8921 1.0401 -2.4243 7 6 2.6114 -0.6622 -3.5092 8 7 2.9243 -1.9393 -3.4500 9 14 2.7894 0.2693 -5.1185 10 1 3.7447 1.3918 -4.9377 11 1 3.2984 -0.6491 -6.1684 12 1 1.4668 0.8061 -5.5285 13 6 2.0400 -0.7212 1.2494 14 1 3.1264 -0.7982 1.2073 15 6 1.6294 0.0665 2.4987 16 7 1.9647 -0.7371 3.6859 17 6 2.6675 -0.2081 4.7070 18 8 3.0336 0.9470 4.6571 19 6 2.9984 -1.0521 5.9110 20 6 3.7966 -0.2178 6.9148 21 6 4.1319 -1.0744 8.1374 22 7 4.8957 -0.2754 9.0988 23 6 6.2542 -0.1673 9.1403 24 6 6.5808 0.6559 10.1572 25 6 5.3804 1.0634 10.7721 26 6 4.3657 0.4784 10.1038 27 6 1.5096 -2.1360 3.7239 28 6 1.9261 -2.8164 2.4148 29 8 1.4705 -2.0310 1.3105 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2491 -1.6319 -1.1524 34 1 3.2477 -2.3967 -4.2420 35 1 2.1707 1.0121 2.5308 36 1 0.5566 0.2578 2.4760 37 1 2.0757 -1.3975 6.3773 38 1 3.5922 -1.9117 5.6000 39 1 4.7192 0.1273 6.4483 40 1 3.2031 0.6420 7.2258 41 1 3.2090 -1.4191 8.6038 42 1 4.7253 -1.9344 7.8267 43 1 6.9488 -0.6549 8.4724 44 1 7.5793 0.9458 10.4495 45 1 5.2896 1.7231 11.6224 46 1 3.3146 0.5877 10.3265 47 1 0.4247 -2.1665 3.8245 48 1 1.9711 -2.6493 4.5674 49 1 3.0121 -2.9010 2.3779 50 1 1.4815 -3.8102 2.3637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001734184791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:35 Heat of formation + Delta-G solvation = -14.379873 kcal Electronic energy + Delta-G solvation = -28728.072058 eV Core-core repulsion = 24756.827861 eV Total energy + Delta-G solvation = -3971.244198 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.35808 -40.49008 -38.59339 -35.57469 -35.37257 -34.60122 -32.58428 -31.67441 -30.32055 -29.00253 -28.58158 -27.82791 -26.40302 -24.73144 -23.50332 -23.02195 -21.86530 -20.70301 -20.22790 -19.71573 -19.24833 -17.90537 -17.31059 -17.08314 -16.40702 -16.32998 -15.81583 -15.15537 -15.11846 -14.95309 -14.53055 -14.45323 -14.08085 -13.97840 -13.52468 -13.39158 -13.31058 -12.93969 -12.68230 -12.65860 -12.48136 -12.30720 -12.26168 -12.17961 -12.08392 -11.85029 -11.37202 -11.28838 -11.16448 -10.85481 -10.74436 -10.57581 -10.33061 -10.12303 -9.88012 -9.85062 -9.65752 -8.90187 -8.85502 -8.56299 -8.38977 -6.94691 -5.74475 -3.03318 2.02857 2.41673 2.56658 2.81407 2.84744 3.45064 3.49442 3.50332 3.91124 4.09238 4.22242 4.42355 4.56163 4.68570 4.69841 4.71695 4.78359 4.80819 4.92899 4.98297 5.02163 5.05941 5.13931 5.28056 5.32043 5.39407 5.43398 5.55202 5.57990 5.62296 5.65314 5.77022 5.79046 5.94975 5.96085 6.06441 6.08964 6.16960 6.30559 6.43797 6.62928 6.76326 6.80147 6.99620 7.12865 7.13682 7.18723 7.42569 7.70526 7.96006 8.43715 9.55542 10.12792 10.49445 11.47841 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.001918 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.014497 B =14594.145388 C =15040.626018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.240 4.240 6 H 0.070 0.930 7 C -0.013 4.013 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.286 1.286 11 H -0.291 1.291 12 H -0.286 1.286 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.614 5.614 17 C 0.514 3.486 18 O -0.538 6.538 19 C -0.137 4.137 20 C -0.120 4.120 21 C 0.105 3.895 22 N -0.447 5.447 23 C -0.015 4.015 24 C -0.204 4.204 25 C -0.204 4.204 26 C -0.016 4.016 27 C 0.072 3.928 28 C 0.045 3.955 29 O -0.357 6.357 30 H 0.052 0.948 31 H 0.056 0.944 32 H 0.034 0.966 33 H 0.389 0.611 34 H 0.255 0.745 35 H 0.099 0.901 36 H 0.081 0.919 37 H 0.096 0.904 38 H 0.097 0.903 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.089 0.911 42 H 0.090 0.910 43 H 0.159 0.841 44 H 0.133 0.867 45 H 0.133 0.867 46 H 0.159 0.841 47 H 0.078 0.922 48 H 0.090 0.910 49 H 0.053 0.947 50 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.292 -2.508 27.463 27.579 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.360 5.360 5 C -0.371 4.371 6 H 0.088 0.912 7 C -0.209 4.209 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.213 1.213 11 H -0.217 1.217 12 H -0.213 1.213 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.041 4.041 16 N -0.348 5.348 17 C 0.302 3.698 18 O -0.415 6.415 19 C -0.178 4.178 20 C -0.159 4.159 21 C -0.017 4.017 22 N -0.123 5.123 23 C -0.145 4.145 24 C -0.229 4.229 25 C -0.229 4.229 26 C -0.146 4.146 27 C -0.052 4.052 28 C -0.033 4.033 29 O -0.275 6.275 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.053 0.947 33 H 0.223 0.777 34 H 0.065 0.935 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.114 0.886 38 H 0.115 0.885 39 H 0.098 0.902 40 H 0.097 0.903 41 H 0.108 0.892 42 H 0.108 0.892 43 H 0.177 0.823 44 H 0.151 0.849 45 H 0.151 0.849 46 H 0.176 0.824 47 H 0.097 0.903 48 H 0.108 0.892 49 H 0.071 0.929 50 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges -0.401 -2.049 26.898 26.979 hybrid contribution 0.273 0.105 -0.762 0.816 sum -0.128 -1.945 26.136 26.208 Atomic orbital electron populations 1.22416 0.98651 1.01605 0.99551 1.20199 0.92836 0.94623 0.84965 0.92302 1.42340 1.77880 1.10938 1.04871 1.19207 1.36709 0.93851 0.87360 0.91212 1.24740 1.02172 0.95972 0.98028 1.69670 1.50725 1.08631 1.28911 0.86273 0.77773 0.78584 0.83576 1.21294 1.21732 1.21281 1.22978 0.97597 0.82971 0.94754 0.91895 1.22514 1.01952 0.95868 0.83731 1.48234 1.54858 1.12728 1.19009 1.20551 0.77486 0.87906 0.83830 1.90726 1.52822 1.17940 1.80024 1.21600 1.02213 0.99447 0.94491 1.21720 1.01834 0.98519 0.93821 1.21888 0.96921 0.93661 0.89239 1.44124 1.06155 1.37330 1.24644 1.21854 0.83577 1.05821 1.03215 1.20911 0.98537 1.03821 0.99615 1.20905 0.92422 1.06069 1.03477 1.21828 0.99052 1.00433 0.93282 1.22521 1.00891 0.81727 1.00025 1.22901 0.99494 0.95265 0.85644 1.88112 1.67719 1.25716 1.45981 0.92871 0.92446 0.94698 0.77689 0.93525 0.88247 0.90104 0.88571 0.88511 0.90218 0.90305 0.89224 0.89155 0.82326 0.84891 0.84918 0.82394 0.90324 0.89209 0.92881 0.87820 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.96 9.06 37.16 0.34 -2.62 16 2 C 0.18 3.67 2.77 -67.93 -0.19 3.48 16 3 H 0.06 1.17 8.08 -51.93 -0.42 0.75 16 4 N -0.72 -18.14 5.10 -53.42 -0.27 -18.41 16 5 C -0.24 -6.68 9.93 -15.06 -0.15 -6.83 16 6 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 8 N -0.93 -28.25 13.06 55.49 0.72 -27.52 16 9 Si 0.91 22.49 29.55 -169.99 -5.02 17.47 16 10 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 11 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 12 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 13 C 0.08 1.28 2.61 -26.57 -0.07 1.21 16 14 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 15 C 0.08 1.16 5.83 -3.49 -0.02 1.14 16 16 N -0.61 -7.20 3.02 -172.21 -0.52 -7.72 16 17 C 0.51 6.08 7.71 -10.98 -0.08 5.99 16 18 O -0.54 -8.63 15.46 5.56 0.09 -8.54 16 19 C -0.14 -0.92 4.07 -27.88 -0.11 -1.04 16 20 C -0.12 -0.92 4.83 -26.73 -0.13 -1.05 16 21 C 0.10 0.58 6.09 -4.05 -0.02 0.56 16 22 N -0.45 -3.71 2.75 -117.13 -0.32 -4.04 16 23 C -0.02 -0.13 11.43 -16.75 -0.19 -0.32 16 24 C -0.20 -1.94 10.86 -39.78 -0.43 -2.37 16 25 C -0.20 -1.91 10.86 -39.78 -0.43 -2.35 16 26 C -0.02 -0.14 11.43 -16.75 -0.19 -0.33 16 27 C 0.07 0.62 6.54 -3.53 -0.02 0.59 16 28 C 0.05 0.50 6.99 37.31 0.26 0.76 16 29 O -0.36 -5.80 9.24 -35.23 -0.33 -6.12 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.06 1.10 7.56 -51.93 -0.39 0.70 16 32 H 0.03 0.52 6.41 -51.93 -0.33 0.19 16 33 H 0.39 10.58 7.58 -40.82 -0.31 10.27 16 34 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 35 H 0.10 1.52 7.09 -51.93 -0.37 1.15 16 36 H 0.08 1.10 6.26 -51.93 -0.33 0.77 16 37 H 0.10 0.42 8.01 -51.93 -0.42 0.01 16 38 H 0.10 0.47 7.66 -51.93 -0.40 0.07 16 39 H 0.08 0.78 8.10 -51.93 -0.42 0.36 16 40 H 0.08 0.74 8.10 -51.93 -0.42 0.32 16 41 H 0.09 0.34 8.14 -51.93 -0.42 -0.08 16 42 H 0.09 0.37 8.14 -51.93 -0.42 -0.05 16 43 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.13 1.07 8.06 -52.49 -0.42 0.64 16 45 H 0.13 1.04 8.06 -52.49 -0.42 0.61 16 46 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 47 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 48 H 0.09 0.46 6.05 -51.93 -0.31 0.15 16 49 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.10 0.93 8.14 -51.93 -0.42 0.51 16 LS Contribution 402.28 15.07 6.06 6.06 Total: -1.00 -35.11 402.28 -9.45 -44.57 By element: Atomic # 1 Polarization: 16.21 SS G_CDS: -8.31 Total: 7.90 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -1.55 Total: -3.65 kcal Atomic # 7 Polarization: -57.30 SS G_CDS: -0.39 Total: -57.69 kcal Atomic # 8 Polarization: -14.43 SS G_CDS: -0.24 Total: -14.67 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -5.02 Total: 17.47 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -35.11 -9.45 -44.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734184791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.188 kcal (2) G-P(sol) polarization free energy of solvation -35.114 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.927 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.568 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds