Wall clock time and date at job start Tue Mar 31 2020 19:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.47184 * 2 1 4 4 N 1.46496 * 109.47056 * 239.99355 * 2 1 3 5 5 C 1.36942 * 119.99845 * 85.00744 * 4 2 1 6 6 H 1.07997 * 119.99669 * 359.97438 * 5 4 2 7 7 C 1.38812 * 120.00056 * 180.02562 * 5 4 2 8 8 N 1.31620 * 119.99707 * 359.97438 * 7 5 4 9 9 Si 1.86794 * 120.00338 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47153 * 59.99248 * 9 7 5 11 11 H 1.48493 * 109.47492 * 179.97438 * 9 7 5 12 12 H 1.48506 * 109.47005 * 299.99752 * 9 7 5 13 13 C 1.53007 * 109.46856 * 119.99745 * 2 1 3 14 14 H 1.08993 * 109.51153 * 175.10204 * 13 2 1 15 15 C 1.53299 * 109.51018 * 295.25316 * 13 2 1 16 16 N 1.47227 * 108.40126 * 172.23138 * 15 13 2 17 17 C 1.34777 * 121.02629 * 129.46516 * 16 15 13 18 18 O 1.21277 * 120.00474 * 0.02562 * 17 16 15 19 19 C 1.50708 * 119.99596 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.47017 * 179.97438 * 19 17 16 21 21 C 1.52998 * 109.47287 * 179.97438 * 20 19 17 22 22 N 1.46494 * 109.47452 * 180.02562 * 21 20 19 23 23 C 1.36342 * 125.63764 * 269.69796 * 22 21 20 24 24 C 1.34852 * 108.22242 * 179.82937 * 23 22 21 25 25 C 1.40898 * 107.41270 * 0.42279 * 24 23 22 26 26 C 1.34848 * 107.41958 * 359.73661 * 25 24 23 27 27 C 1.47150 * 117.98768 * 309.48190 * 16 15 13 28 28 C 1.53297 * 108.41463 * 50.52570 * 27 16 15 29 29 O 1.42959 * 109.51273 * 55.00009 * 13 2 1 30 30 H 1.09004 * 109.46513 * 60.00608 * 1 2 3 31 31 H 1.08997 * 109.47184 * 179.97438 * 1 2 3 32 32 H 1.08994 * 109.47571 * 300.00308 * 1 2 3 33 33 H 0.97006 * 120.00316 * 264.99851 * 4 2 1 34 34 H 0.97009 * 120.00023 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.68120 * 291.95342 * 15 13 2 36 36 H 1.08998 * 109.67871 * 52.50274 * 15 13 2 37 37 H 1.09001 * 109.47245 * 300.00148 * 19 17 16 38 38 H 1.09002 * 109.46954 * 60.00143 * 19 17 16 39 39 H 1.08992 * 109.47555 * 300.00651 * 20 19 17 40 40 H 1.09002 * 109.46721 * 60.00515 * 20 19 17 41 41 H 1.09001 * 109.47121 * 300.00753 * 21 20 19 42 42 H 1.09002 * 109.46808 * 60.00583 * 21 20 19 43 43 H 1.08001 * 125.88968 * 359.95764 * 23 22 21 44 44 H 1.07998 * 126.29463 * 180.16063 * 24 23 22 45 45 H 1.08000 * 126.28702 * 179.73372 * 25 24 23 46 46 H 1.08000 * 125.89233 * 179.97438 * 26 25 24 47 47 H 1.09002 * 109.68441 * 290.77961 * 27 16 15 48 48 H 1.08999 * 109.68020 * 170.26303 * 27 16 15 49 49 H 1.08996 * 109.51604 * 67.59956 * 28 27 16 50 50 H 1.08994 * 109.51066 * 187.70414 * 28 27 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1493 -0.0076 -2.3757 6 1 1.8921 1.0401 -2.4243 7 6 2.6114 -0.6622 -3.5092 8 7 2.9243 -1.9393 -3.4500 9 14 2.7894 0.2693 -5.1185 10 1 3.7447 1.3918 -4.9377 11 1 3.2984 -0.6491 -6.1684 12 1 1.4668 0.8061 -5.5285 13 6 2.0400 -0.7212 1.2494 14 1 3.1264 -0.7982 1.2073 15 6 1.6294 0.0665 2.4987 16 7 1.9647 -0.7371 3.6859 17 6 2.6675 -0.2081 4.7070 18 8 3.0336 0.9470 4.6571 19 6 2.9984 -1.0521 5.9110 20 6 3.7966 -0.2178 6.9148 21 6 4.1319 -1.0744 8.1374 22 7 4.8957 -0.2754 9.0988 23 6 6.2542 -0.1673 9.1403 24 6 6.5808 0.6559 10.1572 25 6 5.3804 1.0634 10.7721 26 6 4.3657 0.4784 10.1038 27 6 1.5096 -2.1360 3.7239 28 6 1.9261 -2.8164 2.4148 29 8 1.4705 -2.0310 1.3105 30 1 -0.3632 0.5138 -0.8901 31 1 -0.3633 -1.0276 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 2.2491 -1.6319 -1.1524 34 1 3.2477 -2.3967 -4.2420 35 1 2.1707 1.0121 2.5308 36 1 0.5566 0.2578 2.4760 37 1 2.0757 -1.3975 6.3773 38 1 3.5922 -1.9117 5.6000 39 1 4.7192 0.1273 6.4483 40 1 3.2031 0.6420 7.2258 41 1 3.2090 -1.4191 8.6038 42 1 4.7253 -1.9344 7.8267 43 1 6.9488 -0.6549 8.4724 44 1 7.5793 0.9458 10.4495 45 1 5.2896 1.7231 11.6224 46 1 3.3146 0.5877 10.3265 47 1 0.4247 -2.1665 3.8245 48 1 1.9711 -2.6493 4.5674 49 1 3.0121 -2.9010 2.3779 50 1 1.4815 -3.8102 2.3637 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001734184791.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:35:34 Heat of formation + Delta-G solvation = -36.929044 kcal Electronic energy + Delta-G solvation = -28729.049864 eV Core-core repulsion = 24756.827861 eV Total energy + Delta-G solvation = -3972.222003 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.96101 -41.46648 -39.71465 -37.12914 -35.97175 -35.74049 -34.34393 -32.48587 -31.70440 -29.96290 -29.62088 -28.92768 -27.30495 -26.28485 -24.88685 -23.92295 -22.82677 -21.33135 -21.19322 -20.80767 -20.10935 -19.30884 -18.57448 -17.94274 -17.58444 -17.08127 -16.95214 -16.53192 -16.08392 -16.04334 -15.62161 -15.43032 -15.28991 -15.05082 -14.67801 -14.49109 -14.17683 -14.12024 -14.00097 -13.65610 -13.31019 -13.28385 -13.10468 -12.93618 -12.83750 -12.81311 -12.77488 -12.53593 -12.44001 -12.36437 -12.22832 -11.83963 -11.82061 -11.65191 -11.57135 -11.17095 -10.93341 -10.83399 -9.59260 -9.48733 -9.03208 -9.01632 -7.93189 -5.21831 1.39396 1.46453 1.49531 1.54568 1.55630 1.80441 2.16886 2.18858 2.55970 2.80014 3.39421 3.41293 3.59260 3.79860 3.85417 3.93586 3.96635 4.01484 4.15423 4.22290 4.26868 4.32196 4.34701 4.39240 4.41862 4.44073 4.54267 4.60706 4.63122 4.63820 4.72276 4.79796 4.84083 4.86943 4.97598 4.99342 5.08045 5.19074 5.23381 5.31853 5.41908 5.46285 5.50281 5.60692 6.11588 6.26063 6.28501 6.33096 6.36227 6.57902 7.07678 7.34676 8.10209 8.35276 9.29958 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021032 B = 0.001918 C = 0.001861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1331.014497 B =14594.145388 C =15040.626018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.174 3.826 3 H 0.054 0.946 4 N -0.732 5.732 5 C -0.242 4.242 6 H 0.075 0.925 7 C -0.076 4.076 8 N -0.968 5.968 9 Si 0.973 3.027 10 H -0.279 1.279 11 H -0.295 1.295 12 H -0.278 1.278 13 C 0.093 3.907 14 H 0.037 0.963 15 C 0.092 3.908 16 N -0.616 5.616 17 C 0.506 3.494 18 O -0.591 6.591 19 C -0.126 4.126 20 C -0.113 4.113 21 C 0.107 3.893 22 N -0.450 5.450 23 C -0.026 4.026 24 C -0.230 4.230 25 C -0.230 4.230 26 C -0.023 4.023 27 C 0.076 3.924 28 C 0.033 3.967 29 O -0.384 6.384 30 H 0.035 0.965 31 H 0.047 0.953 32 H 0.069 0.931 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.081 0.919 36 H 0.091 0.909 37 H 0.135 0.865 38 H 0.127 0.873 39 H 0.049 0.951 40 H 0.056 0.944 41 H 0.117 0.883 42 H 0.112 0.888 43 H 0.176 0.824 44 H 0.138 0.862 45 H 0.139 0.861 46 H 0.181 0.819 47 H 0.094 0.906 48 H 0.137 0.863 49 H 0.047 0.953 50 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 -3.743 29.311 29.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.065 3.935 3 H 0.072 0.928 4 N -0.372 5.372 5 C -0.373 4.373 6 H 0.093 0.907 7 C -0.269 4.269 8 N -0.619 5.619 9 Si 0.802 3.198 10 H -0.206 1.206 11 H -0.222 1.222 12 H -0.204 1.204 13 C 0.033 3.967 14 H 0.055 0.945 15 C -0.032 4.032 16 N -0.349 5.349 17 C 0.297 3.703 18 O -0.471 6.471 19 C -0.165 4.165 20 C -0.151 4.151 21 C -0.014 4.014 22 N -0.126 5.126 23 C -0.156 4.156 24 C -0.254 4.254 25 C -0.254 4.254 26 C -0.153 4.153 27 C -0.046 4.046 28 C -0.044 4.044 29 O -0.302 6.302 30 H 0.054 0.946 31 H 0.067 0.933 32 H 0.088 0.912 33 H 0.208 0.792 34 H 0.059 0.941 35 H 0.099 0.901 36 H 0.109 0.891 37 H 0.153 0.847 38 H 0.145 0.855 39 H 0.068 0.932 40 H 0.075 0.925 41 H 0.136 0.864 42 H 0.131 0.869 43 H 0.193 0.807 44 H 0.156 0.844 45 H 0.157 0.843 46 H 0.198 0.802 47 H 0.112 0.888 48 H 0.154 0.846 49 H 0.065 0.935 50 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -1.724 -3.283 28.788 29.026 hybrid contribution 0.668 0.491 -1.257 1.506 sum -1.056 -2.793 27.531 27.693 Atomic orbital electron populations 1.22201 0.96840 1.01221 1.00403 1.20437 0.93954 0.94405 0.84683 0.92768 1.42502 1.78333 1.10445 1.05923 1.19608 1.35148 0.94193 0.88396 0.90675 1.25552 1.02977 0.96918 1.01417 1.69832 1.52477 1.10167 1.29400 0.85226 0.77944 0.77277 0.79395 1.20556 1.22159 1.20401 1.22501 0.95795 0.83951 0.94409 0.94481 1.22174 1.02035 0.95063 0.83944 1.48359 1.54769 1.13818 1.17994 1.21543 0.76165 0.87791 0.84826 1.90710 1.54696 1.20578 1.81155 1.21663 1.04241 0.98843 0.91775 1.21589 1.00217 0.98489 0.94848 1.22072 0.98282 0.93200 0.87866 1.44361 1.06110 1.37294 1.24795 1.22209 0.84433 1.05743 1.03254 1.21192 0.99080 1.04683 1.00471 1.21193 0.92913 1.06981 1.04356 1.22242 0.99973 0.99952 0.93101 1.22745 1.02193 0.79704 0.99957 1.23266 0.99519 0.96013 0.85559 1.88056 1.67960 1.25500 1.48735 0.94566 0.93345 0.91199 0.79235 0.94111 0.90073 0.89144 0.84700 0.85501 0.93168 0.92549 0.86448 0.86943 0.80682 0.84448 0.84289 0.80231 0.88828 0.84554 0.93466 0.85307 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.28 9.06 71.98 0.65 -4.63 16 2 C 0.17 7.03 2.77 45.00 0.12 7.15 16 3 H 0.05 2.22 8.08 -2.39 -0.02 2.20 16 4 N -0.73 -37.89 5.10 -322.93 -1.65 -39.54 16 5 C -0.24 -13.67 9.93 84.03 0.83 -12.83 16 6 H 0.08 4.07 7.83 -2.91 -0.02 4.05 16 7 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 8 N -0.97 -60.13 13.06 21.65 0.28 -59.84 16 9 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 10 H -0.28 -13.00 7.11 99.48 0.71 -12.30 16 11 H -0.30 -14.30 7.11 99.48 0.71 -13.59 16 12 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 13 C 0.09 3.13 2.61 30.70 0.08 3.21 16 14 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 15 C 0.09 2.52 5.83 86.34 0.50 3.03 16 16 N -0.62 -12.99 3.02 -817.15 -2.47 -15.46 16 17 C 0.51 10.94 7.71 87.66 0.68 11.62 16 18 O -0.59 -19.01 15.46 -3.02 -0.05 -19.06 16 19 C -0.13 -1.17 4.07 29.85 0.12 -1.05 16 20 C -0.11 -1.46 4.83 30.59 0.15 -1.32 16 21 C 0.11 0.81 6.09 86.38 0.53 1.33 16 22 N -0.45 -6.62 2.75 -524.49 -1.44 -8.06 16 23 C -0.03 -0.44 11.43 83.21 0.95 0.51 16 24 C -0.23 -4.36 10.86 22.14 0.24 -4.12 16 25 C -0.23 -4.25 10.86 22.14 0.24 -4.01 16 26 C -0.02 -0.36 11.43 83.21 0.95 0.59 16 27 C 0.08 0.98 6.54 86.35 0.56 1.55 16 28 C 0.03 0.66 6.99 72.08 0.50 1.17 16 29 O -0.38 -12.16 9.24 -148.98 -1.38 -13.53 16 30 H 0.04 1.39 8.14 -2.38 -0.02 1.37 16 31 H 0.05 1.82 7.56 -2.39 -0.02 1.80 16 32 H 0.07 1.99 6.41 -2.39 -0.02 1.98 16 33 H 0.38 21.13 7.58 -92.70 -0.70 20.43 16 34 H 0.25 15.07 8.31 -92.70 -0.77 14.30 16 35 H 0.08 2.54 7.09 -2.39 -0.02 2.52 16 36 H 0.09 2.29 6.26 -2.39 -0.01 2.28 16 37 H 0.14 0.32 8.01 -2.39 -0.02 0.30 16 38 H 0.13 0.51 7.66 -2.39 -0.02 0.50 16 39 H 0.05 0.95 8.10 -2.39 -0.02 0.93 16 40 H 0.06 0.99 8.10 -2.39 -0.02 0.97 16 41 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 42 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.18 2.14 8.06 -2.91 -0.02 2.11 16 44 H 0.14 2.27 8.06 -2.91 -0.02 2.25 16 45 H 0.14 2.19 8.06 -2.91 -0.02 2.17 16 46 H 0.18 1.86 8.06 -2.91 -0.02 1.84 16 47 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 48 H 0.14 0.53 6.05 -2.39 -0.01 0.52 16 49 H 0.05 0.99 8.14 -2.39 -0.02 0.97 16 50 H 0.13 1.90 8.14 -2.39 -0.02 1.88 16 Total: -1.00 -81.17 402.28 3.13 -78.04 By element: Atomic # 1 Polarization: 30.15 SS G_CDS: 0.22 Total: 30.37 kcal Atomic # 6 Polarization: -9.38 SS G_CDS: 7.58 Total: -1.79 kcal Atomic # 7 Polarization: -117.63 SS G_CDS: -5.28 Total: -122.91 kcal Atomic # 8 Polarization: -31.17 SS G_CDS: -1.42 Total: -32.59 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -81.17 3.13 -78.04 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001734184791.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.110 kcal (2) G-P(sol) polarization free energy of solvation -81.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.060 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.131 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds