Wall clock time and date at job start Tue Mar 31 2020 18:35:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09003 * 110.78667 * 2 1 4 4 C 1.54328 * 110.72217 * 123.24082 * 2 1 3 5 5 N 1.47017 * 107.27212 * 140.55374 * 4 2 1 6 6 C 1.34779 * 125.64928 * 181.03910 * 5 4 2 7 7 O 1.21282 * 120.00537 * 175.23077 * 6 5 4 8 8 C 1.50701 * 119.99873 * 355.23416 * 6 5 4 9 9 C 1.53003 * 110.91399 * 299.09473 * 8 6 5 10 10 C 1.54630 * 111.03955 * 175.08238 * 8 6 5 11 11 C 1.51102 * 104.72785 * 266.60365 * 10 8 6 12 12 C 1.30525 * 111.10154 * 343.55894 * 11 10 8 13 13 C 1.51109 * 111.10406 * 0.02562 * 12 11 10 14 14 C 1.47428 * 108.70486 * 1.06273 * 5 4 2 15 15 C 1.54906 * 104.92480 * 335.81208 * 14 5 4 16 16 H 1.08997 * 111.00612 * 278.98935 * 15 14 5 17 17 N 1.46906 * 111.00115 * 155.14153 * 15 14 5 18 18 C 1.46891 * 111.00053 * 86.45277 * 17 15 14 19 19 C 1.50706 * 109.47138 * 180.02562 * 18 17 15 20 20 O 1.21296 * 119.99715 * 359.97438 * 19 18 17 21 21 N 1.34776 * 120.00128 * 180.02562 * 19 18 17 22 22 C 1.37093 * 120.00032 * 180.02562 * 21 19 18 23 23 H 1.08005 * 120.00318 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00299 * 179.97438 * 22 21 19 25 25 N 1.31419 * 119.99585 * 359.97438 * 24 22 21 26 26 Si 1.86790 * 120.00474 * 179.97438 * 24 22 21 27 27 H 1.48505 * 109.47378 * 89.99500 * 26 24 22 28 28 H 1.48500 * 109.47532 * 209.99970 * 26 24 22 29 29 H 1.48510 * 109.47119 * 329.99727 * 26 24 22 30 30 H 1.09005 * 109.46929 * 298.21470 * 1 2 3 31 31 H 1.08997 * 109.46983 * 58.21041 * 1 2 3 32 32 H 1.08993 * 109.47210 * 178.21525 * 1 2 3 33 33 H 1.09002 * 109.88054 * 21.13697 * 4 2 1 34 34 H 1.09001 * 110.01151 * 260.04672 * 4 2 1 35 35 H 1.08995 * 109.47459 * 67.22146 * 9 8 6 36 36 H 1.08994 * 109.47000 * 187.22556 * 9 8 6 37 37 H 1.09008 * 109.46904 * 307.22086 * 9 8 6 38 38 H 1.09007 * 110.38411 * 25.41108 * 10 8 6 39 39 H 1.08999 * 110.38905 * 147.78562 * 10 8 6 40 40 H 1.07993 * 124.44974 * 163.54404 * 11 10 8 41 41 H 1.07999 * 124.44942 * 179.97438 * 12 11 10 42 42 H 1.09006 * 110.38299 * 257.62144 * 13 12 11 43 43 H 1.09001 * 110.38505 * 135.24704 * 13 12 11 44 44 H 1.08991 * 110.36711 * 94.71355 * 14 5 4 45 45 H 1.09002 * 110.36562 * 216.92277 * 14 5 4 46 46 H 1.00903 * 110.99926 * 210.41588 * 17 15 14 47 47 H 1.08997 * 109.47661 * 299.99806 * 18 17 15 48 48 H 1.09000 * 109.46938 * 60.00369 * 18 17 15 49 49 H 0.97000 * 119.99653 * 359.97438 * 21 19 18 50 50 H 0.97002 * 119.99605 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9168 1.0191 0.0000 4 6 2.0760 -0.7912 1.2073 5 7 3.2444 -1.5508 0.7390 6 6 3.9921 -2.3839 1.4896 7 8 4.8837 -3.0268 0.9770 8 6 3.7201 -2.5168 2.9659 9 6 3.9065 -1.1756 3.6784 10 6 4.6113 -3.6108 3.5983 11 6 3.7697 -4.8650 3.5537 12 6 2.5127 -4.5803 3.3478 13 6 2.3064 -3.0888 3.2201 14 6 3.4632 -1.2498 -0.6876 15 6 2.0796 -0.7965 -1.2165 16 1 1.4464 -1.6550 -1.4400 17 7 2.2241 0.0694 -2.3944 18 6 2.3113 -0.7270 -3.6256 19 6 2.4591 0.1934 -4.8098 20 8 2.4883 1.3946 -4.6443 21 7 2.5577 -0.3183 -6.0528 22 6 2.6926 0.5190 -7.1300 23 1 2.7195 1.5886 -6.9826 24 6 2.7948 -0.0085 -8.4114 25 7 2.7626 -1.3100 -8.5907 26 14 2.9779 1.1323 -9.8792 27 1 4.4193 1.3820 -10.1353 28 1 2.3644 0.5020 -11.0757 29 1 2.2957 2.4201 -9.5934 30 1 -0.3633 0.4859 0.9056 31 1 -0.3633 0.5414 -0.8735 32 1 -0.3633 -1.0271 -0.0320 33 1 1.3129 -1.4759 1.5775 34 1 2.3736 -0.1044 1.9996 35 1 3.1336 -0.4801 3.3517 36 1 3.8309 -1.3230 4.7557 37 1 4.8880 -0.7684 3.4355 38 1 5.5218 -3.7436 3.0139 39 1 4.8548 -3.3534 4.6290 40 1 4.1575 -5.8655 3.6758 41 1 1.7237 -5.3144 3.2770 42 1 1.8931 -2.6823 4.1432 43 1 1.6496 -2.8670 2.3789 44 1 4.1931 -0.4480 -0.7985 45 1 3.7978 -2.1422 -1.2166 46 1 1.4688 0.7363 -2.4478 47 1 3.1758 -1.3885 -3.5701 48 1 1.4050 -1.3221 -3.7384 49 1 2.5339 -1.2789 -6.1851 50 1 2.8336 -1.6781 -9.4854 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755114718.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:35:07 Heat of formation + Delta-G solvation = -45.832606 kcal Electronic energy + Delta-G solvation = -29333.548919 eV Core-core repulsion = 25360.940828 eV Total energy + Delta-G solvation = -3972.608090 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.08593 -39.08943 -38.10045 -37.33263 -34.83696 -33.83254 -32.67250 -32.11034 -31.21371 -29.19623 -28.30655 -26.82282 -26.36928 -25.87348 -24.28176 -22.88686 -21.18291 -20.54637 -19.37187 -19.24012 -18.87076 -17.87799 -16.96790 -16.83905 -16.11473 -15.79009 -15.58626 -15.28316 -14.81281 -14.54500 -14.33320 -13.98684 -13.77705 -13.72194 -13.64686 -13.25732 -13.08637 -13.01786 -12.83464 -12.73346 -12.45231 -12.23262 -12.19124 -12.10511 -11.65002 -11.57628 -11.53928 -11.45390 -11.31346 -11.11680 -11.01657 -10.91916 -10.58093 -10.39443 -10.21779 -9.87702 -9.51195 -9.17818 -8.77141 -8.49655 -8.15566 -7.96673 -6.41747 -3.82689 1.98552 2.48810 2.74664 3.18103 3.26768 3.32316 3.89566 4.01884 4.03445 4.10306 4.22157 4.26015 4.35071 4.49893 4.64930 4.75075 4.90661 4.97861 5.04542 5.07355 5.13471 5.18382 5.22193 5.25062 5.31036 5.32659 5.41570 5.45439 5.50831 5.56784 5.59522 5.68373 5.72304 5.78929 5.79557 5.83022 5.86633 5.93520 5.96113 6.04354 6.14352 6.25298 6.27789 6.58609 7.14725 7.35746 7.55151 7.57820 8.03177 8.05752 8.60578 9.17474 9.53805 10.04836 10.75948 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.021501 B = 0.002150 C = 0.002058 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.954456 B =13019.474307 C =13601.868904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.106 4.106 3 H 0.099 0.901 4 C 0.098 3.902 5 N -0.615 5.615 6 C 0.545 3.455 7 O -0.534 6.534 8 C -0.084 4.084 9 C -0.141 4.141 10 C -0.086 4.086 11 C -0.153 4.153 12 C -0.178 4.178 13 C -0.092 4.092 14 C 0.114 3.886 15 C 0.078 3.922 16 H 0.059 0.941 17 N -0.655 5.655 18 C 0.049 3.951 19 C 0.441 3.559 20 O -0.584 6.584 21 N -0.563 5.563 22 C -0.299 4.299 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.901 5.901 26 Si 0.931 3.069 27 H -0.278 1.278 28 H -0.284 1.284 29 H -0.270 1.270 30 H 0.061 0.939 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.074 0.926 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.069 0.931 37 H 0.063 0.937 38 H 0.090 0.910 39 H 0.083 0.917 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.086 0.914 43 H 0.078 0.922 44 H 0.082 0.918 45 H 0.076 0.924 46 H 0.355 0.645 47 H 0.087 0.913 48 H 0.045 0.955 49 H 0.392 0.608 50 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.225 -4.669 26.991 27.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.125 4.125 3 H 0.117 0.883 4 C -0.025 4.025 5 N -0.349 5.349 6 C 0.333 3.667 7 O -0.410 6.410 8 C -0.088 4.088 9 C -0.198 4.198 10 C -0.123 4.123 11 C -0.171 4.171 12 C -0.196 4.196 13 C -0.129 4.129 14 C -0.009 4.009 15 C -0.034 4.034 16 H 0.077 0.923 17 N -0.288 5.288 18 C -0.083 4.083 19 C 0.226 3.774 20 O -0.468 6.468 21 N -0.199 5.199 22 C -0.429 4.429 23 H 0.121 0.879 24 C -0.180 4.180 25 N -0.542 5.542 26 Si 0.758 3.242 27 H -0.204 1.204 28 H -0.209 1.209 29 H -0.194 1.194 30 H 0.080 0.920 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.092 0.908 34 H 0.094 0.906 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.082 0.918 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.143 0.857 41 H 0.143 0.857 42 H 0.105 0.895 43 H 0.097 0.903 44 H 0.100 0.900 45 H 0.095 0.905 46 H 0.176 0.824 47 H 0.105 0.895 48 H 0.063 0.937 49 H 0.226 0.774 50 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -2.984 -4.289 26.735 27.241 hybrid contribution -0.861 -0.548 -1.076 1.483 sum -3.845 -4.837 25.659 26.393 Atomic orbital electron populations 1.21797 0.93628 1.02222 1.02628 1.22445 0.96273 1.00470 0.93337 0.88304 1.22463 0.87860 0.94850 0.97326 1.48316 1.30341 1.44688 1.11556 1.19904 0.80953 0.77899 0.87910 1.90699 1.32073 1.44623 1.73631 1.21562 0.97687 0.97577 0.91929 1.21919 1.02991 0.94599 1.00313 1.21396 0.99084 0.91152 1.00699 1.23268 0.95368 0.98721 0.99758 1.23205 0.97568 0.96496 1.02313 1.21586 0.95222 0.93566 1.02551 1.22278 0.97604 1.01313 0.79741 1.22764 0.95044 0.95015 0.90532 0.92302 1.59939 1.52348 1.16533 1.00008 1.21749 1.01248 0.95546 0.89807 1.19754 0.84669 0.89060 0.83877 1.90523 1.55839 1.15313 1.85123 1.41863 1.63615 1.09672 1.04779 1.19699 1.46941 0.92075 0.84176 0.87898 1.25276 0.97331 0.96327 0.99049 1.69619 1.50321 1.10663 1.23646 0.85851 0.78532 0.79808 0.80050 1.20364 1.20943 1.19422 0.91972 0.91684 0.92424 0.90810 0.90599 0.91173 0.91179 0.91795 0.89195 0.89901 0.85685 0.85698 0.89536 0.90329 0.89989 0.90534 0.82438 0.89518 0.93681 0.77438 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.13 37.15 0.34 -0.73 16 2 C -0.11 -0.95 3.03 -88.63 -0.27 -1.22 16 3 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 4 C 0.10 0.80 5.18 -3.06 -0.02 0.78 16 5 N -0.61 -7.00 3.30 -170.52 -0.56 -7.56 16 6 C 0.55 6.91 6.62 -10.98 -0.07 6.83 16 7 O -0.53 -8.96 15.74 5.56 0.09 -8.87 16 8 C -0.08 -0.76 0.59 -153.95 -0.09 -0.85 16 9 C -0.14 -0.95 8.30 37.16 0.31 -0.64 16 10 C -0.09 -0.78 5.76 -26.83 -0.15 -0.94 16 11 C -0.15 -1.35 10.78 -35.70 -0.38 -1.74 16 12 C -0.18 -1.47 10.78 -35.69 -0.38 -1.85 16 13 C -0.09 -0.69 5.42 -26.83 -0.15 -0.83 16 14 C 0.11 1.50 6.57 -2.53 -0.02 1.48 16 15 C 0.08 0.92 2.78 -65.40 -0.18 0.74 16 16 H 0.06 0.69 7.82 -51.93 -0.41 0.29 16 17 N -0.65 -10.01 6.00 -105.56 -0.63 -10.64 16 18 C 0.05 0.85 6.04 -4.98 -0.03 0.82 16 19 C 0.44 10.33 7.82 -10.98 -0.09 10.25 16 20 O -0.58 -15.66 15.78 5.54 0.09 -15.57 16 21 N -0.56 -14.30 5.29 -10.96 -0.06 -14.36 16 22 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 3.01 7.16 -52.48 -0.38 2.64 16 24 C 0.02 0.59 5.50 -17.46 -0.10 0.49 16 25 N -0.90 -24.69 13.05 55.50 0.72 -23.96 16 26 Si 0.93 21.14 29.55 -169.99 -5.02 16.11 16 27 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 28 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 29 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.41 8.13 -51.93 -0.42 -0.01 16 33 H 0.07 0.50 5.38 -51.93 -0.28 0.22 16 34 H 0.08 0.51 5.53 -51.93 -0.29 0.22 16 35 H 0.07 0.40 5.09 -51.93 -0.26 0.14 16 36 H 0.07 0.36 7.97 -51.93 -0.41 -0.06 16 37 H 0.06 0.48 8.14 -51.92 -0.42 0.06 16 38 H 0.09 1.00 6.95 -51.93 -0.36 0.64 16 39 H 0.08 0.58 7.78 -51.93 -0.40 0.18 16 40 H 0.13 0.95 8.06 -52.49 -0.42 0.53 16 41 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 42 H 0.09 0.48 7.89 -51.93 -0.41 0.07 16 43 H 0.08 0.59 5.16 -51.93 -0.27 0.33 16 44 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 45 H 0.08 1.13 7.99 -51.93 -0.41 0.71 16 46 H 0.35 5.46 8.24 -39.29 -0.32 5.14 16 47 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 48 H 0.05 0.71 8.09 -51.93 -0.42 0.29 16 49 H 0.39 9.57 7.90 -40.82 -0.32 9.25 16 50 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 394.35 15.07 5.94 5.94 Total: -1.00 -33.39 394.35 -8.75 -42.14 By element: Atomic # 1 Polarization: 20.58 SS G_CDS: -7.89 Total: 12.69 kcal Atomic # 6 Polarization: 5.51 SS G_CDS: -1.43 Total: 4.08 kcal Atomic # 7 Polarization: -55.99 SS G_CDS: -0.53 Total: -56.52 kcal Atomic # 8 Polarization: -24.62 SS G_CDS: 0.17 Total: -24.44 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.11 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -33.39 -8.75 -42.14 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755114718.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.696 kcal (2) G-P(sol) polarization free energy of solvation -33.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.082 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.137 kcal (6) G-S(sol) free energy of system = (1) + (5) -45.833 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds