Wall clock time and date at job start Tue Mar 31 2020 19:36:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46995 * 120.00430 * 2 1 3 5 5 N 1.46494 * 109.47297 * 64.99773 * 4 2 1 6 6 C 1.35432 * 119.47303 * 270.01677 * 5 4 2 7 7 C 1.35762 * 121.23288 * 179.97438 * 6 5 4 8 8 C 1.39476 * 120.12563 * 359.79350 * 7 6 5 9 9 C 1.39328 * 118.96038 * 0.45895 * 8 7 6 10 10 C 1.47087 * 120.58555 * 179.79418 * 9 8 7 11 11 O 1.21644 * 119.99725 * 5.90915 * 10 9 8 12 12 N 1.34773 * 120.00343 * 185.89812 * 10 9 8 13 13 C 1.46496 * 120.00325 * 174.95353 * 12 10 9 14 14 H 1.08997 * 109.47105 * 324.99969 * 13 12 10 15 15 C 1.52998 * 109.47167 * 85.00186 * 13 12 10 16 16 C 1.52999 * 109.47060 * 205.00381 * 13 12 10 17 17 H 1.09005 * 109.47128 * 299.99754 * 16 13 12 18 18 C 1.52998 * 109.47615 * 59.99682 * 16 13 12 19 19 N 1.46505 * 109.47126 * 179.97438 * 16 13 12 20 20 C 1.36932 * 120.00107 * 154.99713 * 19 16 13 21 21 H 1.08001 * 119.99974 * 359.97438 * 20 19 16 22 22 C 1.38814 * 120.00288 * 180.02562 * 20 19 16 23 23 N 1.31625 * 119.99682 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00345 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46858 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47272 * 119.99772 * 24 22 20 27 27 H 1.48503 * 109.46535 * 239.99631 * 24 22 20 28 28 C 1.34658 * 119.47214 * 90.00363 * 5 4 2 29 29 O 1.21883 * 120.09746 * 359.97438 * 28 5 4 30 30 H 1.08999 * 109.47043 * 60.00027 * 1 2 3 31 31 H 1.09001 * 109.46803 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47221 * 299.99741 * 1 2 3 33 33 H 1.09003 * 109.46620 * 240.00041 * 2 1 3 34 34 H 1.08999 * 109.47243 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47260 * 300.00363 * 3 2 1 36 36 H 1.09001 * 109.46974 * 59.99603 * 3 2 1 37 37 H 1.09004 * 109.46931 * 304.99674 * 4 2 1 38 38 H 1.09000 * 109.46984 * 185.00018 * 4 2 1 39 39 H 1.08005 * 119.38709 * 359.97438 * 6 5 4 40 40 H 1.08002 * 119.93281 * 180.02562 * 7 6 5 41 41 H 1.08001 * 120.51329 * 180.23976 * 8 7 6 42 42 H 0.97006 * 119.99459 * 354.95511 * 12 10 9 43 43 H 1.08996 * 109.47408 * 300.00036 * 15 13 12 44 44 H 1.08997 * 109.47285 * 59.99893 * 15 13 12 45 45 H 1.09004 * 109.46880 * 179.97438 * 15 13 12 46 46 H 1.08995 * 109.47061 * 300.00262 * 18 16 13 47 47 H 1.09005 * 109.46814 * 59.99880 * 18 16 13 48 48 H 1.08998 * 109.47157 * 179.97438 * 18 16 13 49 49 H 0.97002 * 119.99717 * 335.00131 * 19 16 13 50 50 H 0.96994 * 119.99807 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.4685 -2.5214 1.7211 7 6 0.0736 -3.8198 1.6859 8 6 0.8886 -4.7836 1.0923 9 6 2.1105 -4.3921 0.5491 10 6 2.9999 -5.3794 -0.0814 11 8 2.6266 -6.5277 -0.2287 12 7 4.2284 -5.0118 -0.4962 13 6 5.1551 -6.0169 -1.0225 14 1 5.0168 -6.9552 -0.4854 15 6 4.8783 -6.2358 -2.5113 16 6 6.5939 -5.5306 -0.8374 17 1 6.7323 -4.5922 -1.3745 18 6 6.8707 -5.3116 0.6513 19 7 7.5207 -6.5361 -1.3632 20 6 8.7689 -6.1627 -1.7846 21 1 9.0701 -5.1270 -1.7297 22 6 9.6469 -7.1153 -2.2833 23 7 9.2797 -8.3775 -2.3507 24 14 11.3500 -6.6061 -2.8575 25 1 11.5155 -5.1414 -2.6778 26 1 12.3765 -7.3224 -2.0585 27 1 11.5115 -6.9498 -4.2931 28 6 2.4789 -3.0232 0.6095 29 8 3.5400 -2.6542 0.1369 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1263 -0.6444 1.2951 39 1 -0.1735 -1.7846 2.1808 40 1 -0.8751 -4.1064 2.1152 41 1 0.5789 -5.8176 1.0574 42 1 4.4989 -4.0815 -0.4462 43 1 3.8534 -6.5822 -2.6432 44 1 5.0166 -5.2975 -3.0484 45 1 5.5682 -6.9834 -2.9030 46 1 6.1812 -4.5638 1.0429 47 1 6.7324 -6.2500 1.1885 48 1 7.8959 -4.9656 0.7832 49 1 7.2500 -7.4662 -1.4129 50 1 9.8933 -9.0431 -2.6988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755254993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:20 Heat of formation + Delta-G solvation = -34.021065 kcal Electronic energy + Delta-G solvation = -29710.368277 eV Core-core repulsion = 25738.272373 eV Total energy + Delta-G solvation = -3972.095904 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.93769 -39.32464 -37.48672 -36.92345 -36.31827 -33.68056 -33.65128 -31.57063 -30.50485 -29.16408 -28.23635 -27.80094 -27.42219 -25.05029 -23.86138 -23.17309 -22.49603 -20.92898 -20.46660 -19.81424 -18.09400 -17.77815 -17.37639 -16.90841 -16.34128 -16.14393 -15.37890 -15.25708 -14.77644 -14.67196 -14.44003 -14.05626 -13.99553 -13.52687 -13.46328 -13.17876 -12.96458 -12.88289 -12.80022 -12.70740 -12.50331 -12.29703 -12.26205 -11.82949 -11.68208 -11.53978 -11.46092 -11.27232 -11.01859 -10.83394 -10.75071 -10.52470 -10.30881 -10.23201 -10.07282 -9.74115 -9.68322 -9.50116 -8.88161 -8.52856 -8.27650 -6.87470 -5.68302 -2.96781 0.16800 1.49543 2.12356 2.78329 3.48787 3.53514 3.56502 3.62119 3.74420 4.04043 4.06439 4.22373 4.40345 4.46271 4.64308 4.67710 4.72267 4.87155 4.99491 5.02700 5.04829 5.17830 5.26199 5.34421 5.47286 5.52898 5.58090 5.61395 5.62823 5.70680 5.78446 5.87213 5.88940 5.94859 6.07670 6.09065 6.29028 6.46767 6.57334 6.59754 6.61382 6.74368 6.86307 6.98270 7.15662 7.22704 7.59163 7.78817 8.14540 8.49693 8.72451 9.60981 10.17943 10.53885 11.54474 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.002657 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.910059 B =10534.232348 C =11678.622006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.113 4.113 3 C -0.144 4.144 4 C 0.090 3.910 5 N -0.488 5.488 6 C 0.155 3.845 7 C -0.240 4.240 8 C 0.053 3.947 9 C -0.266 4.266 10 C 0.571 3.429 11 O -0.555 6.555 12 N -0.702 5.702 13 C 0.135 3.865 14 H 0.081 0.919 15 C -0.151 4.151 16 C 0.170 3.830 17 H 0.050 0.950 18 C -0.162 4.162 19 N -0.718 5.718 20 C -0.232 4.232 21 H 0.071 0.929 22 C -0.015 4.015 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.281 1.281 26 H -0.293 1.293 27 H -0.292 1.292 28 C 0.529 3.471 29 O -0.535 6.535 30 H 0.062 0.938 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.082 0.918 34 H 0.062 0.938 35 H 0.062 0.938 36 H 0.057 0.943 37 H 0.093 0.907 38 H 0.106 0.894 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.150 0.850 42 H 0.413 0.587 43 H 0.047 0.953 44 H 0.048 0.952 45 H 0.078 0.922 46 H 0.037 0.963 47 H 0.045 0.955 48 H 0.053 0.947 49 H 0.385 0.615 50 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.124 19.488 10.857 33.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.132 4.132 3 C -0.202 4.202 4 C -0.031 4.031 5 N -0.196 5.196 6 C 0.026 3.974 7 C -0.263 4.263 8 C 0.030 3.970 9 C -0.273 4.273 10 C 0.357 3.643 11 O -0.436 6.436 12 N -0.361 5.361 13 C 0.030 3.970 14 H 0.099 0.901 15 C -0.209 4.209 16 C 0.059 3.941 17 H 0.068 0.932 18 C -0.223 4.223 19 N -0.360 5.360 20 C -0.364 4.364 21 H 0.089 0.911 22 C -0.211 4.211 23 N -0.581 5.581 24 Si 0.737 3.263 25 H -0.206 1.206 26 H -0.220 1.220 27 H -0.220 1.220 28 C 0.331 3.669 29 O -0.416 6.416 30 H 0.081 0.919 31 H 0.074 0.926 32 H 0.077 0.923 33 H 0.100 0.900 34 H 0.081 0.919 35 H 0.081 0.919 36 H 0.076 0.924 37 H 0.112 0.888 38 H 0.125 0.875 39 H 0.182 0.818 40 H 0.171 0.829 41 H 0.167 0.833 42 H 0.258 0.742 43 H 0.066 0.934 44 H 0.068 0.932 45 H 0.097 0.903 46 H 0.056 0.944 47 H 0.064 0.936 48 H 0.072 0.928 49 H 0.219 0.781 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -24.430 19.111 10.386 32.710 hybrid contribution 0.849 0.323 -0.201 0.931 sum -23.581 19.434 10.185 32.210 Atomic orbital electron populations 1.21973 0.94770 1.01908 1.02495 1.21473 0.96352 0.97123 0.98279 1.21752 1.01751 0.94392 1.02287 1.22247 1.03804 0.77505 0.99502 1.45464 1.16716 1.10680 1.46751 1.22163 0.86076 0.97550 0.91644 1.20685 1.03804 0.91527 1.10278 1.22031 0.89459 1.00854 0.84665 1.21178 0.99865 0.93130 1.13137 1.17394 0.81871 0.86702 0.78324 1.90771 1.75114 1.19574 1.58104 1.46578 1.13474 1.13906 1.62164 1.21297 0.89131 0.91908 0.94690 0.90093 1.22034 1.01155 1.02249 0.95493 1.20366 0.87229 0.93627 0.92845 0.93209 1.22411 1.00678 1.00117 0.99051 1.42309 1.12556 1.06051 1.75116 1.19264 0.90076 0.93518 1.33522 0.91146 1.24730 0.98542 0.95456 1.02344 1.69680 1.35807 1.00230 1.52373 0.86127 0.84649 0.77460 0.78034 1.20618 1.21989 1.21961 1.17070 0.84324 0.85970 0.79574 1.90665 1.22865 1.79360 1.48759 0.91910 0.92604 0.92302 0.89953 0.91903 0.91916 0.92377 0.88846 0.87524 0.81788 0.82948 0.83262 0.74222 0.93418 0.93249 0.90291 0.94410 0.93576 0.92804 0.78102 0.93622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 8.63 37.16 0.32 -0.32 16 2 C -0.11 -0.65 3.12 -90.62 -0.28 -0.93 16 3 C -0.14 -0.68 9.19 37.16 0.34 -0.34 16 4 C 0.09 0.53 4.83 -4.05 -0.02 0.51 16 5 N -0.49 -3.80 2.46 -119.34 -0.29 -4.09 16 6 C 0.16 0.75 8.20 -16.85 -0.14 0.61 16 7 C -0.24 -1.35 9.99 -40.01 -0.40 -1.75 16 8 C 0.05 0.52 9.69 -38.72 -0.38 0.14 16 9 C -0.27 -3.57 5.92 -104.51 -0.62 -4.19 16 10 C 0.57 10.07 7.69 -12.67 -0.10 9.98 16 11 O -0.55 -11.19 16.07 5.24 0.08 -11.10 16 12 N -0.70 -12.78 4.29 -54.99 -0.24 -13.02 16 13 C 0.13 2.73 2.17 -67.93 -0.15 2.58 16 14 H 0.08 1.76 7.65 -51.93 -0.40 1.37 16 15 C -0.15 -3.03 9.33 37.16 0.35 -2.69 16 16 C 0.17 3.72 2.52 -67.93 -0.17 3.54 16 17 H 0.05 1.11 8.08 -51.93 -0.42 0.69 16 18 C -0.16 -3.32 9.33 37.16 0.35 -2.97 16 19 N -0.72 -18.79 4.43 -53.42 -0.24 -19.02 16 20 C -0.23 -6.64 9.93 -15.06 -0.15 -6.78 16 21 H 0.07 1.96 7.83 -52.49 -0.41 1.55 16 22 C -0.01 -0.44 5.50 -17.43 -0.10 -0.54 16 23 N -0.93 -28.86 13.06 55.49 0.72 -28.14 16 24 Si 0.91 23.00 29.55 -169.99 -5.02 17.98 16 25 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 26 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 C 0.53 6.55 7.44 -14.92 -0.11 6.44 16 29 O -0.54 -8.09 13.26 5.02 0.07 -8.03 16 30 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 31 H 0.05 0.25 6.34 -51.93 -0.33 -0.08 16 32 H 0.06 0.14 8.14 -51.93 -0.42 -0.28 16 33 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 36 H 0.06 0.20 8.14 -51.93 -0.42 -0.23 16 37 H 0.09 0.25 8.00 -51.93 -0.42 -0.16 16 38 H 0.11 0.80 7.38 -51.93 -0.38 0.42 16 39 H 0.16 0.12 7.88 -52.48 -0.41 -0.30 16 40 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.15 1.41 7.71 -52.49 -0.40 1.01 16 42 H 0.41 7.38 5.00 -40.82 -0.20 7.17 16 43 H 0.05 0.93 8.09 -51.93 -0.42 0.51 16 44 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 45 H 0.08 1.72 7.45 -51.93 -0.39 1.34 16 46 H 0.04 0.69 7.44 -51.93 -0.39 0.30 16 47 H 0.05 0.95 8.14 -51.93 -0.42 0.53 16 48 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 49 H 0.38 10.71 7.58 -40.82 -0.31 10.40 16 50 H 0.25 7.60 8.31 -40.82 -0.34 7.26 16 LS Contribution 404.02 15.07 6.09 6.09 Total: -1.00 -35.71 404.02 -8.32 -44.03 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -8.24 Total: 12.01 kcal Atomic # 6 Polarization: 4.54 SS G_CDS: -1.25 Total: 3.29 kcal Atomic # 7 Polarization: -64.23 SS G_CDS: -0.04 Total: -64.27 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.15 Total: -19.13 kcal Atomic # 14 Polarization: 23.00 SS G_CDS: -5.02 Total: 17.98 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.71 -8.32 -44.03 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755254993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.010 kcal (2) G-P(sol) polarization free energy of solvation -35.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.700 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.321 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.021 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds