Wall clock time and date at job start Tue Mar 31 2020 19:36:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47119 * 2 1 4 4 C 1.52998 * 109.46995 * 120.00430 * 2 1 3 5 5 N 1.46494 * 109.47297 * 64.99773 * 4 2 1 6 6 C 1.35432 * 119.47303 * 270.01677 * 5 4 2 7 7 C 1.35762 * 121.23288 * 179.97438 * 6 5 4 8 8 C 1.39476 * 120.12563 * 359.79350 * 7 6 5 9 9 C 1.39328 * 118.96038 * 0.45895 * 8 7 6 10 10 C 1.47087 * 120.58555 * 179.79418 * 9 8 7 11 11 O 1.21644 * 119.99725 * 5.90915 * 10 9 8 12 12 N 1.34773 * 120.00343 * 185.89812 * 10 9 8 13 13 C 1.46496 * 120.00325 * 174.95353 * 12 10 9 14 14 H 1.08997 * 109.47105 * 324.99969 * 13 12 10 15 15 C 1.52998 * 109.47167 * 85.00186 * 13 12 10 16 16 C 1.52999 * 109.47060 * 205.00381 * 13 12 10 17 17 H 1.09005 * 109.47128 * 299.99754 * 16 13 12 18 18 C 1.52998 * 109.47615 * 59.99682 * 16 13 12 19 19 N 1.46505 * 109.47126 * 179.97438 * 16 13 12 20 20 C 1.36932 * 120.00107 * 154.99713 * 19 16 13 21 21 H 1.08001 * 119.99974 * 359.97438 * 20 19 16 22 22 C 1.38814 * 120.00288 * 180.02562 * 20 19 16 23 23 N 1.31625 * 119.99682 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00345 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.46858 * 359.97438 * 24 22 20 26 26 H 1.48497 * 109.47272 * 119.99772 * 24 22 20 27 27 H 1.48503 * 109.46535 * 239.99631 * 24 22 20 28 28 C 1.34658 * 119.47214 * 90.00363 * 5 4 2 29 29 O 1.21883 * 120.09746 * 359.97438 * 28 5 4 30 30 H 1.08999 * 109.47043 * 60.00027 * 1 2 3 31 31 H 1.09001 * 109.46803 * 179.97438 * 1 2 3 32 32 H 1.08995 * 109.47221 * 299.99741 * 1 2 3 33 33 H 1.09003 * 109.46620 * 240.00041 * 2 1 3 34 34 H 1.08999 * 109.47243 * 180.02562 * 3 2 1 35 35 H 1.09004 * 109.47260 * 300.00363 * 3 2 1 36 36 H 1.09001 * 109.46974 * 59.99603 * 3 2 1 37 37 H 1.09004 * 109.46931 * 304.99674 * 4 2 1 38 38 H 1.09000 * 109.46984 * 185.00018 * 4 2 1 39 39 H 1.08005 * 119.38709 * 359.97438 * 6 5 4 40 40 H 1.08002 * 119.93281 * 180.02562 * 7 6 5 41 41 H 1.08001 * 120.51329 * 180.23976 * 8 7 6 42 42 H 0.97006 * 119.99459 * 354.95511 * 12 10 9 43 43 H 1.08996 * 109.47408 * 300.00036 * 15 13 12 44 44 H 1.08997 * 109.47285 * 59.99893 * 15 13 12 45 45 H 1.09004 * 109.46880 * 179.97438 * 15 13 12 46 46 H 1.08995 * 109.47061 * 300.00262 * 18 16 13 47 47 H 1.09005 * 109.46814 * 59.99880 * 18 16 13 48 48 H 1.08998 * 109.47157 * 179.97438 * 18 16 13 49 49 H 0.97002 * 119.99717 * 335.00131 * 19 16 13 50 50 H 0.96994 * 119.99807 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 1.6524 -2.1329 1.1905 6 6 0.4685 -2.5214 1.7211 7 6 0.0736 -3.8198 1.6859 8 6 0.8886 -4.7836 1.0923 9 6 2.1105 -4.3921 0.5491 10 6 2.9999 -5.3794 -0.0814 11 8 2.6266 -6.5277 -0.2287 12 7 4.2284 -5.0118 -0.4962 13 6 5.1551 -6.0169 -1.0225 14 1 5.0168 -6.9552 -0.4854 15 6 4.8783 -6.2358 -2.5113 16 6 6.5939 -5.5306 -0.8374 17 1 6.7323 -4.5922 -1.3745 18 6 6.8707 -5.3116 0.6513 19 7 7.5207 -6.5361 -1.3632 20 6 8.7689 -6.1627 -1.7846 21 1 9.0701 -5.1270 -1.7297 22 6 9.6469 -7.1153 -2.2833 23 7 9.2797 -8.3775 -2.3507 24 14 11.3500 -6.6061 -2.8575 25 1 11.5155 -5.1414 -2.6778 26 1 12.3765 -7.3224 -2.0585 27 1 11.5115 -6.9498 -4.2931 28 6 2.4789 -3.0232 0.6095 29 8 3.5400 -2.6542 0.1369 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 3.1300 1.4425 -0.0005 35 1 1.6767 1.9564 -0.8900 36 1 1.6766 1.9563 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1263 -0.6444 1.2951 39 1 -0.1735 -1.7846 2.1808 40 1 -0.8751 -4.1064 2.1152 41 1 0.5789 -5.8176 1.0574 42 1 4.4989 -4.0815 -0.4462 43 1 3.8534 -6.5822 -2.6432 44 1 5.0166 -5.2975 -3.0484 45 1 5.5682 -6.9834 -2.9030 46 1 6.1812 -4.5638 1.0429 47 1 6.7324 -6.2500 1.1885 48 1 7.8959 -4.9656 0.7832 49 1 7.2500 -7.4662 -1.4129 50 1 9.8933 -9.0431 -2.6988 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755254993.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:19 Heat of formation + Delta-G solvation = -58.002452 kcal Electronic energy + Delta-G solvation = -29711.408188 eV Core-core repulsion = 25738.272373 eV Total energy + Delta-G solvation = -3973.135815 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.69104 -40.65418 -38.38542 -38.28108 -37.18915 -35.50843 -34.35438 -33.45636 -31.54246 -30.57855 -30.18892 -28.18296 -27.90496 -26.02530 -25.93688 -24.14379 -23.78189 -21.91141 -21.53485 -21.23497 -19.42550 -19.09911 -18.43423 -17.88773 -17.13991 -17.09278 -16.71774 -16.45904 -15.85038 -15.82495 -15.48519 -15.38840 -15.28681 -14.98452 -14.80852 -14.65431 -14.15346 -13.88681 -13.58661 -13.52242 -13.43749 -13.22115 -13.11144 -13.05126 -12.97128 -12.78004 -12.74505 -12.64786 -12.33446 -12.24628 -12.11463 -11.91841 -11.76851 -11.68675 -11.56182 -11.18957 -11.02183 -10.98475 -10.90276 -10.02421 -9.08416 -9.03796 -7.93608 -5.23455 -0.54712 0.80060 1.46503 1.47940 1.48271 1.58150 1.75200 2.31406 2.59705 2.73344 3.39491 3.47896 3.69568 3.72968 3.79346 3.88502 3.91232 3.96350 4.02954 4.14654 4.17127 4.23619 4.30030 4.37925 4.50970 4.61741 4.69668 4.73800 4.79868 4.83430 4.85943 4.88205 4.95059 4.98105 5.00820 5.01090 5.13986 5.22422 5.23999 5.25113 5.37585 5.38775 5.41250 5.49037 5.52639 5.65240 5.91503 6.26759 6.61714 6.90076 7.32922 7.36638 8.03812 8.30988 9.30143 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016154 B = 0.002657 C = 0.002397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1732.910059 B =10534.232348 C =11678.622006 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.111 4.111 3 C -0.142 4.142 4 C 0.087 3.913 5 N -0.481 5.481 6 C 0.186 3.814 7 C -0.240 4.240 8 C 0.074 3.926 9 C -0.325 4.325 10 C 0.566 3.434 11 O -0.594 6.594 12 N -0.703 5.703 13 C 0.147 3.853 14 H 0.061 0.939 15 C -0.140 4.140 16 C 0.172 3.828 17 H 0.047 0.953 18 C -0.149 4.149 19 N -0.727 5.727 20 C -0.236 4.236 21 H 0.076 0.924 22 C -0.076 4.076 23 N -0.970 5.970 24 Si 0.975 3.025 25 H -0.266 1.266 26 H -0.293 1.293 27 H -0.293 1.293 28 C 0.522 3.478 29 O -0.579 6.579 30 H 0.056 0.944 31 H 0.054 0.946 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.047 0.953 35 H 0.060 0.940 36 H 0.082 0.918 37 H 0.142 0.858 38 H 0.083 0.917 39 H 0.226 0.774 40 H 0.197 0.803 41 H 0.146 0.854 42 H 0.414 0.586 43 H 0.049 0.951 44 H 0.053 0.947 45 H 0.057 0.943 46 H 0.058 0.942 47 H 0.038 0.962 48 H 0.046 0.954 49 H 0.373 0.627 50 H 0.251 0.749 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -28.104 22.803 13.229 38.533 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.130 4.130 3 C -0.199 4.199 4 C -0.033 4.033 5 N -0.186 5.186 6 C 0.056 3.944 7 C -0.262 4.262 8 C 0.050 3.950 9 C -0.332 4.332 10 C 0.355 3.645 11 O -0.478 6.478 12 N -0.363 5.363 13 C 0.041 3.959 14 H 0.079 0.921 15 C -0.198 4.198 16 C 0.062 3.938 17 H 0.065 0.935 18 C -0.209 4.209 19 N -0.368 5.368 20 C -0.367 4.367 21 H 0.094 0.906 22 C -0.268 4.268 23 N -0.620 5.620 24 Si 0.804 3.196 25 H -0.190 1.190 26 H -0.221 1.221 27 H -0.221 1.221 28 C 0.325 3.675 29 O -0.464 6.464 30 H 0.075 0.925 31 H 0.073 0.927 32 H 0.108 0.892 33 H 0.060 0.940 34 H 0.066 0.934 35 H 0.079 0.921 36 H 0.101 0.899 37 H 0.160 0.840 38 H 0.101 0.899 39 H 0.243 0.757 40 H 0.214 0.786 41 H 0.164 0.836 42 H 0.261 0.739 43 H 0.068 0.932 44 H 0.072 0.928 45 H 0.076 0.924 46 H 0.077 0.923 47 H 0.057 0.943 48 H 0.065 0.935 49 H 0.205 0.795 50 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -27.455 22.505 12.792 37.735 hybrid contribution 1.528 -0.576 -0.834 1.834 sum -25.927 21.929 11.958 36.001 Atomic orbital electron populations 1.21968 0.92815 1.02172 1.03832 1.21415 0.97888 0.97128 0.96590 1.21736 1.00852 0.93965 1.03389 1.22489 1.03080 0.76279 1.01424 1.45524 1.16971 1.10928 1.45215 1.23226 0.84423 0.98695 0.88070 1.21164 1.04635 0.90846 1.09506 1.22301 0.88175 1.01911 0.82575 1.20785 1.01423 0.93032 1.17964 1.18087 0.81735 0.87203 0.77448 1.90723 1.75828 1.21412 1.59849 1.46537 1.13715 1.13333 1.62718 1.20928 0.88842 0.91707 0.94467 0.92107 1.21899 1.00592 1.01720 0.95584 1.20447 0.87423 0.92405 0.93486 0.93461 1.22226 1.00696 1.00317 0.97658 1.42429 1.12756 1.06204 1.75412 1.19613 0.90847 0.93726 1.32547 0.90618 1.25571 1.02498 0.95498 1.03211 1.69846 1.37072 1.01301 1.53806 0.85047 0.79740 0.77768 0.77040 1.19033 1.22051 1.22051 1.16967 0.84436 0.86226 0.79824 1.90607 1.24846 1.79903 1.51058 0.92502 0.92733 0.89166 0.93999 0.93406 0.92115 0.89930 0.84001 0.89851 0.75748 0.78552 0.83632 0.73918 0.93189 0.92753 0.92412 0.92328 0.94285 0.93486 0.79466 0.94030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.62 8.63 71.98 0.62 0.00 16 2 C -0.11 -1.04 3.12 -10.79 -0.03 -1.08 16 3 C -0.14 -1.06 9.19 71.98 0.66 -0.40 16 4 C 0.09 0.75 4.83 86.38 0.42 1.17 16 5 N -0.48 -6.08 2.46 -649.70 -1.60 -7.68 16 6 C 0.19 0.73 8.20 83.56 0.69 1.41 16 7 C -0.24 -1.53 9.99 21.99 0.22 -1.31 16 8 C 0.07 1.33 9.69 22.83 0.22 1.55 16 9 C -0.32 -8.86 5.92 -19.79 -0.12 -8.98 16 10 C 0.57 21.11 7.69 86.57 0.67 21.78 16 11 O -0.59 -25.43 16.07 -4.17 -0.07 -25.49 16 12 N -0.70 -27.15 4.29 -446.14 -1.92 -29.06 16 13 C 0.15 6.30 2.17 44.99 0.10 6.40 16 14 H 0.06 2.85 7.65 -2.39 -0.02 2.83 16 15 C -0.14 -5.96 9.33 71.98 0.67 -5.29 16 16 C 0.17 7.82 2.52 44.99 0.11 7.94 16 17 H 0.05 2.19 8.08 -2.38 -0.02 2.17 16 18 C -0.15 -6.26 9.33 71.98 0.67 -5.58 16 19 N -0.73 -39.58 4.43 -322.93 -1.43 -41.01 16 20 C -0.24 -13.72 9.93 84.03 0.83 -12.89 16 21 H 0.08 4.25 7.83 -2.91 -0.02 4.23 16 22 C -0.08 -4.52 5.50 84.86 0.47 -4.06 16 23 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 24 Si 0.97 48.03 29.55 68.60 2.03 50.06 16 25 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 26 H -0.29 -14.39 7.11 99.48 0.71 -13.69 16 27 H -0.29 -14.40 7.11 99.48 0.71 -13.70 16 28 C 0.52 12.88 7.44 85.16 0.63 13.51 16 29 O -0.58 -18.36 13.26 -4.94 -0.07 -18.42 16 30 H 0.06 0.33 8.14 -2.39 -0.02 0.31 16 31 H 0.05 0.24 6.34 -2.39 -0.02 0.22 16 32 H 0.09 -0.15 8.14 -2.39 -0.02 -0.17 16 33 H 0.04 0.73 8.14 -2.39 -0.02 0.71 16 34 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.06 0.48 8.14 -2.38 -0.02 0.46 16 36 H 0.08 0.23 8.14 -2.39 -0.02 0.21 16 37 H 0.14 -0.11 8.00 -2.38 -0.02 -0.13 16 38 H 0.08 1.18 7.38 -2.39 -0.02 1.16 16 39 H 0.23 -1.72 7.88 -2.91 -0.02 -1.74 16 40 H 0.20 -0.37 8.06 -2.91 -0.02 -0.39 16 41 H 0.15 2.65 7.71 -2.91 -0.02 2.63 16 42 H 0.41 15.71 5.00 -92.74 -0.46 15.25 16 43 H 0.05 2.07 8.09 -2.39 -0.02 2.05 16 44 H 0.05 2.21 8.14 -2.39 -0.02 2.19 16 45 H 0.06 2.68 7.45 -2.38 -0.02 2.67 16 46 H 0.06 2.19 7.44 -2.39 -0.02 2.18 16 47 H 0.04 1.66 8.14 -2.38 -0.02 1.64 16 48 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 49 H 0.37 21.88 7.58 -92.71 -0.70 21.18 16 50 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 Total: -1.00 -84.98 404.02 3.83 -81.15 By element: Atomic # 1 Polarization: 38.04 SS G_CDS: -0.23 Total: 37.81 kcal Atomic # 6 Polarization: 7.33 SS G_CDS: 6.83 Total: 14.16 kcal Atomic # 7 Polarization: -134.59 SS G_CDS: -4.66 Total: -139.25 kcal Atomic # 8 Polarization: -43.78 SS G_CDS: -0.13 Total: -43.92 kcal Atomic # 14 Polarization: 48.03 SS G_CDS: 2.03 Total: 50.06 kcal Total: -84.98 3.83 -81.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755254993.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.146 kcal (2) G-P(sol) polarization free energy of solvation -84.982 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.002 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds