Wall clock time and date at job start Tue Mar 31 2020 19:36:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47106 * 2 1 4 4 C 1.52997 * 109.47106 * 120.00377 * 2 1 3 5 5 N 1.46493 * 109.47356 * 174.99981 * 4 2 1 6 6 C 1.35434 * 119.47056 * 270.02148 * 5 4 2 7 7 C 1.35760 * 121.23319 * 179.75415 * 6 5 4 8 8 C 1.39469 * 120.13039 * 0.47703 * 7 6 5 9 9 C 1.39344 * 118.95814 * 359.51067 * 8 7 6 10 10 C 1.47080 * 120.58644 * 180.22482 * 9 8 7 11 11 O 1.21643 * 120.00025 * 354.15694 * 10 9 8 12 12 N 1.34774 * 119.99744 * 174.14878 * 10 9 8 13 13 C 1.46502 * 120.00035 * 185.11901 * 12 10 9 14 14 H 1.09003 * 109.46826 * 324.99864 * 13 12 10 15 15 C 1.52990 * 109.47133 * 85.00394 * 13 12 10 16 16 C 1.53000 * 109.46979 * 205.00502 * 13 12 10 17 17 H 1.09003 * 109.47413 * 64.99885 * 16 13 12 18 18 C 1.53002 * 109.47190 * 304.99782 * 16 13 12 19 19 N 1.46505 * 109.46847 * 184.99750 * 16 13 12 20 20 C 1.36942 * 119.99986 * 204.99674 * 19 16 13 21 21 H 1.08003 * 119.99966 * 0.02562 * 20 19 16 22 22 C 1.38808 * 119.99771 * 180.02562 * 20 19 16 23 23 N 1.31618 * 120.00349 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99776 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47337 * 90.00068 * 24 22 20 26 26 H 1.48504 * 109.47355 * 210.00170 * 24 22 20 27 27 H 1.48500 * 109.47270 * 329.99845 * 24 22 20 28 28 C 1.34650 * 119.47641 * 89.99552 * 5 4 2 29 29 O 1.21891 * 120.09891 * 359.97438 * 28 5 4 30 30 H 1.09006 * 109.46986 * 299.99597 * 1 2 3 31 31 H 1.08996 * 109.47386 * 59.99808 * 1 2 3 32 32 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46595 * 239.99970 * 2 1 3 34 34 H 1.09004 * 109.46770 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47155 * 300.00334 * 3 2 1 36 36 H 1.08997 * 109.47417 * 60.00474 * 3 2 1 37 37 H 1.09001 * 109.47459 * 54.99255 * 4 2 1 38 38 H 1.09008 * 109.47201 * 294.99877 * 4 2 1 39 39 H 1.08000 * 119.38644 * 359.97438 * 6 5 4 40 40 H 1.08000 * 119.93511 * 180.26369 * 7 6 5 41 41 H 1.07995 * 120.52391 * 179.78457 * 8 7 6 42 42 H 0.97004 * 120.00088 * 5.12254 * 12 10 9 43 43 H 1.09004 * 109.47188 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.47266 * 299.99677 * 15 13 12 45 45 H 1.09003 * 109.47697 * 60.00004 * 15 13 12 46 46 H 1.08994 * 109.47138 * 60.00093 * 18 16 13 47 47 H 1.09002 * 109.46877 * 180.02562 * 18 16 13 48 48 H 1.09003 * 109.47026 * 300.00339 * 18 16 13 49 49 H 0.97000 * 120.00083 * 25.00109 * 19 16 13 50 50 H 0.96997 * 120.00493 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.0672 -1.9084 0.6058 7 6 5.4161 -2.0401 0.5273 8 6 6.2478 -1.0567 1.0625 9 6 5.6714 0.0596 1.6653 10 6 6.5146 1.1205 2.2369 11 8 7.7221 0.9799 2.2818 12 7 5.9495 2.2485 2.7107 13 6 6.7941 3.3512 3.1766 14 1 7.6903 2.9481 3.6482 15 6 7.1932 4.2258 1.9865 16 6 6.0188 4.1938 4.1915 17 1 5.8115 3.5948 5.0783 18 6 4.7001 4.6565 3.5688 19 7 6.8180 5.3627 4.5676 20 6 6.6127 5.9722 5.7766 21 1 5.8620 5.5909 6.4530 22 6 7.3695 7.0800 6.1327 23 7 8.2841 7.5449 5.3082 24 14 7.0900 7.9109 7.7821 25 1 7.9707 7.2909 8.8044 26 1 7.4066 9.3573 7.6678 27 1 5.6705 7.7454 8.1856 28 6 4.2567 0.1543 1.7184 29 8 3.7279 1.1209 2.2398 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6053 -1.7198 1.2951 38 1 1.7517 -0.1584 2.1370 39 1 3.4346 -2.6792 0.1910 40 1 5.8460 -2.9097 0.0526 41 1 7.3217 -1.1567 1.0067 42 1 4.9834 2.3303 2.7434 43 1 7.8220 5.0460 2.3330 44 1 7.7456 3.6255 1.2635 45 1 6.2970 4.6289 1.5149 46 1 4.1056 3.7869 3.2890 47 1 4.1480 5.2571 4.2918 48 1 4.9074 5.2555 2.6821 49 1 7.4924 5.7049 3.9602 50 1 8.8132 8.3188 5.5571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755254995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:27 Heat of formation + Delta-G solvation = -28.501809 kcal Electronic energy + Delta-G solvation = -30025.532087 eV Core-core repulsion = 26053.675516 eV Total energy + Delta-G solvation = -3971.856571 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.95768 -39.33767 -37.42492 -36.95847 -36.42226 -33.67674 -33.63265 -31.59960 -30.42957 -29.04840 -28.01583 -27.57317 -27.42114 -25.23396 -24.16527 -23.08246 -22.86961 -21.10878 -20.37707 -19.00623 -18.11166 -17.84013 -17.41908 -16.94204 -16.45684 -16.00465 -15.42568 -15.08302 -14.81138 -14.70917 -14.38705 -14.14647 -14.00046 -13.62417 -13.40638 -13.29654 -12.92735 -12.81955 -12.71702 -12.62879 -12.41464 -12.39720 -12.23341 -11.77260 -11.52542 -11.44580 -11.37225 -11.24069 -11.12181 -10.85138 -10.71807 -10.34882 -10.24711 -10.21615 -10.10139 -9.78373 -9.69748 -9.49211 -8.82917 -8.53380 -8.27481 -6.88104 -5.68348 -2.96721 0.16938 1.50283 2.12752 2.78894 3.49709 3.54079 3.56085 3.63934 3.73065 4.06458 4.06865 4.27453 4.43674 4.49121 4.66635 4.68594 4.78413 4.88972 5.00449 5.02144 5.17153 5.31862 5.42565 5.48794 5.54070 5.54612 5.62121 5.65054 5.68067 5.78529 5.82864 5.87659 5.89807 6.01903 6.05458 6.12319 6.27056 6.36723 6.49847 6.58473 6.62833 6.69614 6.84603 6.93723 7.17910 7.25728 7.60611 7.78814 8.15167 8.50547 8.73547 9.61581 10.18865 10.54535 11.54623 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.002775 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.731506 B =10086.465594 C =11177.723149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.109 4.109 3 C -0.146 4.146 4 C 0.089 3.911 5 N -0.488 5.488 6 C 0.155 3.845 7 C -0.239 4.239 8 C 0.053 3.947 9 C -0.267 4.267 10 C 0.570 3.430 11 O -0.555 6.555 12 N -0.704 5.704 13 C 0.133 3.867 14 H 0.086 0.914 15 C -0.157 4.157 16 C 0.170 3.830 17 H 0.050 0.950 18 C -0.168 4.168 19 N -0.720 5.720 20 C -0.235 4.235 21 H 0.070 0.930 22 C -0.015 4.015 23 N -0.933 5.933 24 Si 0.907 3.093 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C 0.529 3.471 29 O -0.531 6.531 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.056 0.944 33 H 0.072 0.928 34 H 0.054 0.946 35 H 0.053 0.947 36 H 0.068 0.932 37 H 0.093 0.907 38 H 0.107 0.893 39 H 0.165 0.835 40 H 0.153 0.847 41 H 0.149 0.851 42 H 0.414 0.586 43 H 0.075 0.925 44 H 0.047 0.953 45 H 0.055 0.945 46 H 0.040 0.960 47 H 0.054 0.946 48 H 0.050 0.950 49 H 0.386 0.614 50 H 0.255 0.745 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.337 -24.602 -15.987 33.107 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.128 4.128 3 C -0.204 4.204 4 C -0.032 4.032 5 N -0.197 5.197 6 C 0.025 3.975 7 C -0.262 4.262 8 C 0.029 3.971 9 C -0.274 4.274 10 C 0.356 3.644 11 O -0.436 6.436 12 N -0.365 5.365 13 C 0.027 3.973 14 H 0.104 0.896 15 C -0.215 4.215 16 C 0.059 3.941 17 H 0.068 0.932 18 C -0.228 4.228 19 N -0.364 5.364 20 C -0.366 4.366 21 H 0.088 0.912 22 C -0.210 4.210 23 N -0.582 5.582 24 Si 0.738 3.262 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.208 1.208 28 C 0.331 3.669 29 O -0.413 6.413 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.075 0.925 33 H 0.091 0.909 34 H 0.073 0.927 35 H 0.072 0.928 36 H 0.087 0.913 37 H 0.111 0.889 38 H 0.125 0.875 39 H 0.183 0.817 40 H 0.170 0.830 41 H 0.167 0.833 42 H 0.261 0.739 43 H 0.094 0.906 44 H 0.067 0.933 45 H 0.074 0.926 46 H 0.059 0.941 47 H 0.073 0.927 48 H 0.069 0.931 49 H 0.222 0.778 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -15.002 -23.927 -15.412 32.173 hybrid contribution -0.304 0.499 0.591 0.831 sum -15.305 -23.428 -14.822 31.667 Atomic orbital electron populations 1.21776 0.93686 1.01956 1.02868 1.21497 0.96725 0.97765 0.96784 1.21886 1.01425 0.94635 1.02417 1.22285 0.76560 1.02829 1.01521 1.45474 1.09415 1.18136 1.46628 1.22167 0.95613 0.88980 0.90751 1.20680 0.91697 1.03378 1.10482 1.22039 1.01722 0.88545 0.84760 1.21199 0.92277 1.00846 1.13097 1.17430 0.86947 0.81765 0.78250 1.90771 1.14097 1.80366 1.58383 1.46755 1.12822 1.14807 1.62163 1.21294 0.94536 0.86336 0.95086 0.89599 1.22128 1.01467 1.00048 0.97878 1.20332 0.90472 0.89135 0.94140 0.93239 1.22500 0.99176 0.99929 1.01193 1.42467 1.43195 1.30876 1.19814 1.19253 1.15677 1.07807 0.93911 0.91179 1.24726 0.98898 0.98983 0.98434 1.69660 1.25692 1.26717 1.36144 0.86184 0.77510 0.78671 0.83798 1.21787 1.21856 1.20824 1.17019 0.87416 0.82620 0.79819 1.90669 1.73507 1.30492 1.46611 0.91963 0.91880 0.92483 0.90916 0.92720 0.92784 0.91336 0.88898 0.87509 0.81735 0.82965 0.83289 0.73876 0.90589 0.93346 0.92648 0.94117 0.92691 0.93089 0.77842 0.93555 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.64 9.19 37.16 0.34 -0.30 16 2 C -0.11 -0.62 3.13 -90.62 -0.28 -0.90 16 3 C -0.15 -1.30 7.92 37.16 0.29 -1.01 16 4 C 0.09 0.51 4.92 -4.05 -0.02 0.49 16 5 N -0.49 -3.73 2.47 -119.34 -0.29 -4.03 16 6 C 0.15 0.72 10.25 -16.85 -0.17 0.55 16 7 C -0.24 -1.34 9.99 -40.01 -0.40 -1.74 16 8 C 0.05 0.51 9.70 -38.71 -0.38 0.14 16 9 C -0.27 -3.58 5.92 -104.50 -0.62 -4.20 16 10 C 0.57 10.10 7.70 -12.68 -0.10 10.00 16 11 O -0.56 -11.31 16.03 5.24 0.08 -11.23 16 12 N -0.70 -12.83 4.90 -54.99 -0.27 -13.10 16 13 C 0.13 2.69 2.66 -67.93 -0.18 2.51 16 14 H 0.09 1.93 7.51 -51.93 -0.39 1.54 16 15 C -0.16 -3.04 9.00 37.15 0.33 -2.70 16 16 C 0.17 3.75 2.93 -67.93 -0.20 3.55 16 17 H 0.05 1.14 8.08 -51.93 -0.42 0.72 16 18 C -0.17 -3.36 9.01 37.16 0.33 -3.02 16 19 N -0.72 -19.01 5.03 -53.42 -0.27 -19.28 16 20 C -0.24 -6.79 9.93 -15.06 -0.15 -6.94 16 21 H 0.07 1.97 7.83 -52.48 -0.41 1.56 16 22 C -0.01 -0.43 5.50 -17.43 -0.10 -0.53 16 23 N -0.93 -29.00 13.06 55.49 0.72 -28.28 16 24 Si 0.91 23.12 29.55 -169.99 -5.02 18.10 16 25 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.07 16 27 H -0.28 -7.00 7.11 56.52 0.40 -6.60 16 28 C 0.53 6.42 6.00 -14.92 -0.09 6.33 16 29 O -0.53 -7.71 11.42 5.02 0.06 -7.65 16 30 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 31 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 32 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 33 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.61 6.06 -51.93 -0.31 0.29 16 35 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.70 7.96 -51.93 -0.41 0.29 16 37 H 0.09 0.23 8.00 -51.93 -0.42 -0.19 16 38 H 0.11 0.80 7.38 -51.92 -0.38 0.41 16 39 H 0.17 0.05 8.02 -52.49 -0.42 -0.37 16 40 H 0.15 0.38 8.06 -52.49 -0.42 -0.04 16 41 H 0.15 1.42 7.71 -52.49 -0.40 1.01 16 42 H 0.41 7.29 3.18 -40.82 -0.13 7.16 16 43 H 0.08 1.58 6.29 -51.93 -0.33 1.25 16 44 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 45 H 0.05 1.02 6.57 -51.93 -0.34 0.67 16 46 H 0.04 0.73 6.29 -51.93 -0.33 0.40 16 47 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.05 1.01 6.57 -51.93 -0.34 0.67 16 49 H 0.39 10.65 5.77 -40.82 -0.24 10.42 16 50 H 0.25 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 394.10 15.07 5.94 5.94 Total: -1.00 -36.00 394.10 -8.22 -44.22 By element: Atomic # 1 Polarization: 20.89 SS G_CDS: -7.79 Total: 13.10 kcal Atomic # 6 Polarization: 3.59 SS G_CDS: -1.38 Total: 2.22 kcal Atomic # 7 Polarization: -64.58 SS G_CDS: -0.11 Total: -64.69 kcal Atomic # 8 Polarization: -19.02 SS G_CDS: 0.14 Total: -18.88 kcal Atomic # 14 Polarization: 23.12 SS G_CDS: -5.02 Total: 18.10 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -36.00 -8.22 -44.22 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755254995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.713 kcal (2) G-P(sol) polarization free energy of solvation -35.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.219 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.215 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds