Wall clock time and date at job start Tue Mar 31 2020 19:36:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47106 * 2 1 4 4 C 1.52997 * 109.47106 * 120.00377 * 2 1 3 5 5 N 1.46493 * 109.47356 * 174.99981 * 4 2 1 6 6 C 1.35434 * 119.47056 * 270.02148 * 5 4 2 7 7 C 1.35760 * 121.23319 * 179.75415 * 6 5 4 8 8 C 1.39469 * 120.13039 * 0.47703 * 7 6 5 9 9 C 1.39344 * 118.95814 * 359.51067 * 8 7 6 10 10 C 1.47080 * 120.58644 * 180.22482 * 9 8 7 11 11 O 1.21643 * 120.00025 * 354.15694 * 10 9 8 12 12 N 1.34774 * 119.99744 * 174.14878 * 10 9 8 13 13 C 1.46502 * 120.00035 * 185.11901 * 12 10 9 14 14 H 1.09003 * 109.46826 * 324.99864 * 13 12 10 15 15 C 1.52990 * 109.47133 * 85.00394 * 13 12 10 16 16 C 1.53000 * 109.46979 * 205.00502 * 13 12 10 17 17 H 1.09003 * 109.47413 * 64.99885 * 16 13 12 18 18 C 1.53002 * 109.47190 * 304.99782 * 16 13 12 19 19 N 1.46505 * 109.46847 * 184.99750 * 16 13 12 20 20 C 1.36942 * 119.99986 * 204.99674 * 19 16 13 21 21 H 1.08003 * 119.99966 * 0.02562 * 20 19 16 22 22 C 1.38808 * 119.99771 * 180.02562 * 20 19 16 23 23 N 1.31618 * 120.00349 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99776 * 180.02562 * 22 20 19 25 25 H 1.48493 * 109.47337 * 90.00068 * 24 22 20 26 26 H 1.48504 * 109.47355 * 210.00170 * 24 22 20 27 27 H 1.48500 * 109.47270 * 329.99845 * 24 22 20 28 28 C 1.34650 * 119.47641 * 89.99552 * 5 4 2 29 29 O 1.21891 * 120.09891 * 359.97438 * 28 5 4 30 30 H 1.09006 * 109.46986 * 299.99597 * 1 2 3 31 31 H 1.08996 * 109.47386 * 59.99808 * 1 2 3 32 32 H 1.09001 * 109.47194 * 180.02562 * 1 2 3 33 33 H 1.08997 * 109.46595 * 239.99970 * 2 1 3 34 34 H 1.09004 * 109.46770 * 180.02562 * 3 2 1 35 35 H 1.08996 * 109.47155 * 300.00334 * 3 2 1 36 36 H 1.08997 * 109.47417 * 60.00474 * 3 2 1 37 37 H 1.09001 * 109.47459 * 54.99255 * 4 2 1 38 38 H 1.09008 * 109.47201 * 294.99877 * 4 2 1 39 39 H 1.08000 * 119.38644 * 359.97438 * 6 5 4 40 40 H 1.08000 * 119.93511 * 180.26369 * 7 6 5 41 41 H 1.07995 * 120.52391 * 179.78457 * 8 7 6 42 42 H 0.97004 * 120.00088 * 5.12254 * 12 10 9 43 43 H 1.09004 * 109.47188 * 180.02562 * 15 13 12 44 44 H 1.09001 * 109.47266 * 299.99677 * 15 13 12 45 45 H 1.09003 * 109.47697 * 60.00004 * 15 13 12 46 46 H 1.08994 * 109.47138 * 60.00093 * 18 16 13 47 47 H 1.09002 * 109.46877 * 180.02562 * 18 16 13 48 48 H 1.09003 * 109.47026 * 300.00339 * 18 16 13 49 49 H 0.97000 * 120.00083 * 25.00109 * 19 16 13 50 50 H 0.96997 * 120.00493 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 7 3.5000 -0.8265 1.1905 6 6 4.0672 -1.9084 0.6058 7 6 5.4161 -2.0401 0.5273 8 6 6.2478 -1.0567 1.0625 9 6 5.6714 0.0596 1.6653 10 6 6.5146 1.1205 2.2369 11 8 7.7221 0.9799 2.2818 12 7 5.9495 2.2485 2.7107 13 6 6.7941 3.3512 3.1766 14 1 7.6903 2.9481 3.6482 15 6 7.1932 4.2258 1.9865 16 6 6.0188 4.1938 4.1915 17 1 5.8115 3.5948 5.0783 18 6 4.7001 4.6565 3.5688 19 7 6.8180 5.3627 4.5676 20 6 6.6127 5.9722 5.7766 21 1 5.8620 5.5909 6.4530 22 6 7.3695 7.0800 6.1327 23 7 8.2841 7.5449 5.3082 24 14 7.0900 7.9109 7.7821 25 1 7.9707 7.2909 8.8044 26 1 7.4066 9.3573 7.6678 27 1 5.6705 7.7454 8.1856 28 6 4.2567 0.1543 1.7184 29 8 3.7279 1.1209 2.2398 30 1 -0.3633 0.5138 0.8901 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6767 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6053 -1.7198 1.2951 38 1 1.7517 -0.1584 2.1370 39 1 3.4346 -2.6792 0.1910 40 1 5.8460 -2.9097 0.0526 41 1 7.3217 -1.1567 1.0067 42 1 4.9834 2.3303 2.7434 43 1 7.8220 5.0460 2.3330 44 1 7.7456 3.6255 1.2635 45 1 6.2970 4.6289 1.5149 46 1 4.1056 3.7869 3.2890 47 1 4.1480 5.2571 4.2918 48 1 4.9074 5.2555 2.6821 49 1 7.4924 5.7049 3.9602 50 1 8.8132 8.3188 5.5571 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755254995.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:36:26 Heat of formation + Delta-G solvation = -53.157423 kcal Electronic energy + Delta-G solvation = -30026.601234 eV Core-core repulsion = 26053.675516 eV Total energy + Delta-G solvation = -3972.925718 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.69389 -40.68869 -38.50864 -38.18685 -37.21102 -35.52034 -34.36135 -33.46763 -31.46156 -30.55533 -29.86964 -28.18152 -27.88007 -26.33845 -26.06816 -24.52993 -23.73148 -22.15765 -21.13055 -20.67462 -19.55132 -19.03376 -18.54886 -17.87022 -17.19323 -16.91389 -16.67943 -16.60631 -15.99174 -15.95164 -15.65456 -15.38677 -15.28715 -15.06775 -14.66871 -14.46960 -14.02219 -13.95942 -13.56872 -13.52097 -13.39203 -13.23703 -13.14664 -13.06335 -13.00639 -12.87615 -12.81077 -12.68040 -12.15191 -12.11520 -12.04168 -11.90485 -11.71727 -11.70309 -11.65114 -11.17689 -10.98977 -10.97511 -10.86553 -10.01789 -9.07448 -9.04173 -7.95358 -5.25295 -0.53062 0.83549 1.45462 1.48376 1.50716 1.56667 1.76314 2.33681 2.58363 2.74673 3.37245 3.50198 3.74710 3.80025 3.80510 3.90114 3.92697 3.95944 4.00016 4.03117 4.16464 4.25354 4.27545 4.46685 4.53209 4.56606 4.65943 4.73183 4.78711 4.80430 4.87034 4.90928 4.94782 4.98397 5.01060 5.06530 5.10442 5.18840 5.19054 5.27666 5.38805 5.43312 5.47905 5.51226 5.54988 5.64858 5.94070 6.26059 6.63983 6.92959 7.32268 7.38069 8.03953 8.31136 9.28346 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016054 B = 0.002775 C = 0.002504 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1743.731506 B =10086.465594 C =11177.723149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.101 4.101 3 C -0.146 4.146 4 C 0.085 3.915 5 N -0.483 5.483 6 C 0.189 3.811 7 C -0.243 4.243 8 C 0.073 3.927 9 C -0.328 4.328 10 C 0.563 3.437 11 O -0.598 6.598 12 N -0.705 5.705 13 C 0.143 3.857 14 H 0.056 0.944 15 C -0.144 4.144 16 C 0.170 3.830 17 H 0.038 0.962 18 C -0.152 4.152 19 N -0.731 5.731 20 C -0.243 4.243 21 H 0.074 0.926 22 C -0.075 4.075 23 N -0.969 5.969 24 Si 0.977 3.023 25 H -0.288 1.288 26 H -0.293 1.293 27 H -0.269 1.269 28 C 0.524 3.476 29 O -0.571 6.571 30 H 0.049 0.951 31 H 0.060 0.940 32 H 0.083 0.917 33 H 0.094 0.906 34 H 0.028 0.972 35 H 0.055 0.945 36 H 0.044 0.956 37 H 0.144 0.856 38 H 0.083 0.917 39 H 0.231 0.769 40 H 0.196 0.804 41 H 0.143 0.857 42 H 0.417 0.583 43 H 0.058 0.942 44 H 0.052 0.948 45 H 0.065 0.935 46 H 0.060 0.940 47 H 0.045 0.955 48 H 0.051 0.949 49 H 0.377 0.623 50 H 0.252 0.748 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.217 -28.506 -17.590 38.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.120 4.120 3 C -0.204 4.204 4 C -0.035 4.035 5 N -0.188 5.188 6 C 0.059 3.941 7 C -0.264 4.264 8 C 0.049 3.951 9 C -0.335 4.335 10 C 0.353 3.647 11 O -0.482 6.482 12 N -0.367 5.367 13 C 0.037 3.963 14 H 0.075 0.925 15 C -0.203 4.203 16 C 0.061 3.939 17 H 0.056 0.944 18 C -0.212 4.212 19 N -0.374 5.374 20 C -0.375 4.375 21 H 0.092 0.908 22 C -0.267 4.267 23 N -0.620 5.620 24 Si 0.805 3.195 25 H -0.215 1.215 26 H -0.219 1.219 27 H -0.194 1.194 28 C 0.327 3.673 29 O -0.456 6.456 30 H 0.069 0.931 31 H 0.079 0.921 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.047 0.953 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.162 0.838 38 H 0.101 0.899 39 H 0.247 0.753 40 H 0.213 0.787 41 H 0.161 0.839 42 H 0.266 0.734 43 H 0.076 0.924 44 H 0.071 0.929 45 H 0.084 0.916 46 H 0.079 0.921 47 H 0.064 0.936 48 H 0.070 0.930 49 H 0.211 0.789 50 H 0.061 0.939 Dipole moment (debyes) X Y Z Total from point charges -17.951 -27.892 -17.035 37.288 hybrid contribution 0.518 1.471 0.957 1.830 sum -17.433 -26.420 -16.077 35.502 Atomic orbital electron populations 1.21752 0.92475 1.03461 1.02257 1.21472 0.97586 0.95309 0.97607 1.21865 0.99710 0.97429 1.01368 1.22543 0.75097 1.05308 1.00507 1.45556 1.10224 1.17717 1.45301 1.23275 0.96230 0.87954 0.86652 1.21148 0.91801 1.03351 1.10132 1.22300 1.02258 0.87956 0.82610 1.20801 0.92813 1.01725 1.18195 1.18160 0.87080 0.82171 0.77246 1.90720 1.15943 1.81273 1.60250 1.46718 1.12590 1.14704 1.62716 1.20913 0.93584 0.86931 0.94874 0.92527 1.21992 1.01548 0.99241 0.97502 1.20412 0.91157 0.87970 0.94363 0.94394 1.22282 0.97782 1.00477 1.00613 1.42609 1.43606 1.31912 1.19241 1.19620 1.15368 1.07828 0.94656 0.90778 1.25587 0.98996 0.99922 1.02208 1.69826 1.26833 1.27220 1.38096 0.85092 0.77944 0.77131 0.79287 1.21493 1.21936 1.19383 1.16865 0.87177 0.83193 0.80016 1.90610 1.73926 1.32289 1.48736 0.93142 0.92055 0.89848 0.88814 0.95257 0.92554 0.93654 0.83849 0.89855 0.75296 0.78702 0.83910 0.73449 0.92350 0.92922 0.91617 0.92111 0.93587 0.92992 0.78854 0.93918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.79 9.19 71.98 0.66 -0.12 16 2 C -0.10 -0.82 3.13 -10.79 -0.03 -0.85 16 3 C -0.15 -2.55 7.92 71.98 0.57 -1.98 16 4 C 0.09 0.64 4.92 86.38 0.42 1.07 16 5 N -0.48 -5.74 2.47 -649.70 -1.60 -7.34 16 6 C 0.19 0.60 10.25 83.56 0.86 1.46 16 7 C -0.24 -1.54 9.99 21.99 0.22 -1.32 16 8 C 0.07 1.32 9.70 22.83 0.22 1.54 16 9 C -0.33 -8.99 5.92 -19.79 -0.12 -9.10 16 10 C 0.56 21.34 7.70 86.56 0.67 22.01 16 11 O -0.60 -26.16 16.03 -4.17 -0.07 -26.23 16 12 N -0.71 -27.49 4.90 -446.14 -2.19 -29.67 16 13 C 0.14 6.23 2.66 44.99 0.12 6.35 16 14 H 0.06 2.78 7.51 -2.39 -0.02 2.76 16 15 C -0.14 -5.95 9.00 71.98 0.65 -5.30 16 16 C 0.17 7.91 2.93 44.99 0.13 8.04 16 17 H 0.04 1.84 8.08 -2.39 -0.02 1.82 16 18 C -0.15 -6.27 9.01 71.98 0.65 -5.62 16 19 N -0.73 -40.37 5.03 -322.92 -1.63 -41.99 16 20 C -0.24 -14.42 9.93 84.03 0.83 -13.58 16 21 H 0.07 4.24 7.83 -2.91 -0.02 4.22 16 22 C -0.07 -4.52 5.50 84.86 0.47 -4.05 16 23 N -0.97 -62.00 13.06 21.65 0.28 -61.71 16 24 Si 0.98 48.38 29.55 68.60 2.03 50.41 16 25 H -0.29 -14.04 7.11 99.48 0.71 -13.34 16 26 H -0.29 -14.44 7.11 99.48 0.71 -13.74 16 27 H -0.27 -12.60 7.11 99.48 0.71 -11.89 16 28 C 0.52 12.55 6.00 85.17 0.51 13.06 16 29 O -0.57 -17.26 11.42 -4.96 -0.06 -17.31 16 30 H 0.05 0.41 8.14 -2.38 -0.02 0.39 16 31 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 32 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 33 H 0.09 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.03 0.65 6.06 -2.38 -0.01 0.64 16 35 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.04 0.98 7.96 -2.39 -0.02 0.96 16 37 H 0.14 -0.29 8.00 -2.39 -0.02 -0.31 16 38 H 0.08 1.11 7.38 -2.38 -0.02 1.10 16 39 H 0.23 -2.09 8.02 -2.91 -0.02 -2.11 16 40 H 0.20 -0.34 8.06 -2.91 -0.02 -0.36 16 41 H 0.14 2.69 7.71 -2.91 -0.02 2.67 16 42 H 0.42 15.62 3.18 -92.76 -0.30 15.32 16 43 H 0.06 2.59 6.29 -2.39 -0.02 2.58 16 44 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 45 H 0.06 2.52 6.57 -2.39 -0.02 2.51 16 46 H 0.06 2.26 6.29 -2.39 -0.02 2.24 16 47 H 0.04 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.05 2.12 6.57 -2.39 -0.02 2.10 16 49 H 0.38 21.96 5.77 -92.71 -0.54 21.42 16 50 H 0.25 15.54 8.31 -92.71 -0.77 14.77 16 Total: -1.00 -86.55 394.10 3.73 -82.82 By element: Atomic # 1 Polarization: 39.30 SS G_CDS: 0.12 Total: 39.43 kcal Atomic # 6 Polarization: 4.78 SS G_CDS: 6.83 Total: 11.61 kcal Atomic # 7 Polarization: -135.59 SS G_CDS: -5.13 Total: -140.72 kcal Atomic # 8 Polarization: -43.42 SS G_CDS: -0.12 Total: -43.54 kcal Atomic # 14 Polarization: 48.38 SS G_CDS: 2.03 Total: 50.41 kcal Total: -86.55 3.73 -82.82 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755254995.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.666 kcal (2) G-P(sol) polarization free energy of solvation -86.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.823 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds