Wall clock time and date at job start Tue Mar 31 2020 18:51:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46732 * 2 1 4 4 N 1.46500 * 109.47108 * 239.99862 * 2 1 3 5 5 C 1.34776 * 119.99974 * 84.99572 * 4 2 1 6 6 O 1.21280 * 119.99866 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99983 * 179.97438 * 5 4 2 8 8 C 1.53005 * 110.94407 * 303.98983 * 7 5 4 9 9 C 1.54632 * 111.03840 * 67.97953 * 7 5 4 10 10 C 1.51099 * 104.72486 * 93.39697 * 9 7 5 11 11 C 1.30529 * 111.10307 * 16.43776 * 10 9 7 12 12 C 1.51103 * 111.10472 * 0.02562 * 11 10 9 13 13 C 1.53005 * 109.47289 * 119.99901 * 2 1 3 14 14 C 1.53930 * 113.72968 * 281.87350 * 13 2 1 15 15 N 1.48188 * 86.09850 * 221.95554 * 14 13 2 16 16 C 1.46896 * 111.06984 * 137.52327 * 15 14 13 17 17 C 1.50703 * 109.47516 * 90.56605 * 16 15 14 18 18 O 1.21294 * 119.99881 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00432 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00334 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99918 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00280 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99734 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00262 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46896 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47255 * 119.99688 * 24 22 20 27 27 H 1.48502 * 109.47078 * 239.99670 * 24 22 20 28 28 C 1.47957 * 90.79692 * 24.60223 * 15 14 13 29 29 H 1.08996 * 109.47476 * 60.09702 * 1 2 3 30 30 H 1.09002 * 109.47034 * 180.08961 * 1 2 3 31 31 H 1.08997 * 109.47294 * 300.08480 * 1 2 3 32 32 H 0.96999 * 120.00119 * 265.00061 * 4 2 1 33 33 H 1.09001 * 109.47040 * 296.01310 * 8 7 5 34 34 H 1.09003 * 109.47162 * 56.01114 * 8 7 5 35 35 H 1.09002 * 109.47111 * 176.00897 * 8 7 5 36 36 H 1.09003 * 110.38895 * 212.21190 * 9 7 5 37 37 H 1.09007 * 110.38639 * 334.58400 * 9 7 5 38 38 H 1.07998 * 124.44672 * 196.45994 * 10 9 7 39 39 H 1.07999 * 124.44370 * 180.02562 * 11 10 9 40 40 H 1.08999 * 110.38358 * 224.75322 * 12 11 10 41 41 H 1.09003 * 110.47979 * 102.42144 * 12 11 10 42 42 H 1.09001 * 112.93391 * 53.43751 * 13 2 1 43 43 H 1.09001 * 113.76582 * 336.23959 * 14 13 2 44 44 H 1.09004 * 113.75863 * 107.60218 * 14 13 2 45 45 H 1.09005 * 109.47422 * 210.56693 * 16 15 14 46 46 H 1.09004 * 109.47480 * 330.56485 * 16 15 14 47 47 H 0.97000 * 119.99951 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99935 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.75657 * 221.08578 * 28 15 14 50 50 H 1.08995 * 113.86207 * 89.73577 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8589 1.1585 -2.4115 7 6 2.6499 -0.7286 -3.5875 8 6 4.0108 -1.3773 -3.3266 9 6 1.6233 -1.7729 -4.0841 10 6 0.7963 -1.0389 -5.1138 11 6 1.3923 0.0555 -5.5020 12 6 2.7165 0.2335 -4.7964 13 6 2.0401 -0.7212 1.2493 14 6 1.9732 0.1327 2.5282 15 7 3.3109 -0.4202 2.8459 16 6 4.2038 0.6238 3.3663 17 6 4.0863 0.6829 4.8676 18 8 3.3332 -0.0708 5.4471 19 7 4.8188 1.5726 5.5664 20 6 4.7115 1.6268 6.9321 21 1 4.0403 0.9562 7.4480 22 6 5.4663 2.5443 7.6525 23 7 6.2834 3.3599 7.0248 24 14 5.3206 2.6176 9.5134 25 1 4.3403 1.6015 9.9735 26 1 6.6452 2.3407 10.1249 27 1 4.8601 3.9693 9.9210 28 6 3.5700 -0.6728 1.4113 29 1 -0.3634 0.5123 -0.8908 30 1 -0.3633 -1.0277 0.0016 31 1 -0.3634 0.5151 0.8892 32 1 2.2490 -1.6318 -1.1526 33 1 4.7482 -0.6026 -3.1160 34 1 3.9353 -2.0491 -2.4716 35 1 4.3187 -1.9423 -4.2065 36 1 2.1344 -2.6202 -4.5414 37 1 0.9935 -2.1081 -3.2599 38 1 -0.1623 -1.3754 -5.4802 39 1 0.9916 0.7435 -6.2318 40 1 2.8300 1.2628 -4.4560 41 1 3.5400 -0.0407 -5.4558 42 1 1.6179 -1.7194 1.3656 43 1 1.9751 1.2064 2.3402 44 1 1.1924 -0.1772 3.2229 45 1 5.2328 0.3921 3.0913 46 1 3.9225 1.5875 2.9416 47 1 5.4214 2.1752 5.1030 48 1 6.8106 4.0003 7.5277 49 1 4.0627 -1.6251 1.2151 50 1 4.0402 0.1636 0.8942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001755383324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:30 Heat of formation + Delta-G solvation = -24.393824 kcal Electronic energy + Delta-G solvation = -28956.191276 eV Core-core repulsion = 24984.512841 eV Total energy + Delta-G solvation = -3971.678435 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.02708 -40.02792 -38.08783 -37.59015 -35.39837 -33.85453 -32.65905 -31.29747 -30.91268 -29.40133 -28.54512 -26.16541 -25.90459 -25.75388 -24.30264 -23.16021 -21.33982 -20.24019 -19.30697 -19.26431 -19.03182 -17.86170 -17.29703 -16.62086 -16.07371 -15.88298 -15.52921 -15.39457 -14.91120 -14.67555 -14.47678 -14.10202 -13.71226 -13.60803 -13.50369 -13.23703 -13.11034 -12.92803 -12.66009 -12.57277 -12.53253 -12.48486 -12.28405 -11.92867 -11.67185 -11.55209 -11.53533 -11.28976 -11.10040 -11.05619 -10.89167 -10.83682 -10.56972 -10.32286 -10.19100 -9.92262 -9.48198 -9.33093 -9.20793 -8.69198 -8.14035 -7.92873 -6.38765 -3.79398 1.93380 2.43134 2.86656 3.18111 3.28252 3.35683 3.90728 3.96156 4.00540 4.19518 4.23560 4.28423 4.42531 4.56021 4.66737 4.86825 4.96157 5.00748 5.05602 5.14154 5.17334 5.21866 5.26498 5.27796 5.32735 5.39008 5.42857 5.46785 5.49217 5.55304 5.59548 5.68411 5.70176 5.71194 5.73941 5.76672 5.80754 5.95932 6.02136 6.18127 6.22777 6.30483 6.33077 6.53134 6.60079 7.19260 7.28896 7.58113 8.03006 8.09564 8.65555 9.21709 9.58290 10.10752 10.79267 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.001938 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.119958 B =14442.988892 C =14731.018162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.150 3.850 3 H 0.088 0.912 4 N -0.721 5.721 5 C 0.531 3.469 6 O -0.535 6.535 7 C -0.090 4.090 8 C -0.136 4.136 9 C -0.085 4.085 10 C -0.179 4.179 11 C -0.151 4.151 12 C -0.086 4.086 13 C -0.126 4.126 14 C 0.023 3.977 15 N -0.448 5.448 16 C 0.010 3.990 17 C 0.447 3.553 18 O -0.576 6.576 19 N -0.568 5.568 20 C -0.297 4.297 21 H 0.103 0.897 22 C 0.020 3.980 23 N -0.903 5.903 24 Si 0.929 3.071 25 H -0.268 1.268 26 H -0.282 1.282 27 H -0.282 1.282 28 C 0.005 3.995 29 H 0.058 0.942 30 H 0.057 0.943 31 H 0.069 0.931 32 H 0.399 0.601 33 H 0.065 0.935 34 H 0.063 0.937 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.073 0.927 38 H 0.124 0.876 39 H 0.125 0.875 40 H 0.089 0.911 41 H 0.082 0.918 42 H 0.104 0.896 43 H 0.069 0.931 44 H 0.094 0.906 45 H 0.087 0.913 46 H 0.057 0.943 47 H 0.391 0.609 48 H 0.270 0.730 49 H 0.087 0.913 50 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.048 -9.303 -26.166 28.651 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 H 0.106 0.894 4 N -0.372 5.372 5 C 0.317 3.683 6 O -0.411 6.411 7 C -0.093 4.093 8 C -0.193 4.193 9 C -0.122 4.122 10 C -0.197 4.197 11 C -0.169 4.169 12 C -0.123 4.123 13 C -0.145 4.145 14 C -0.106 4.106 15 N -0.170 5.170 16 C -0.122 4.122 17 C 0.232 3.768 18 O -0.459 6.459 19 N -0.205 5.205 20 C -0.426 4.426 21 H 0.121 0.879 22 C -0.181 4.181 23 N -0.545 5.545 24 Si 0.756 3.244 25 H -0.192 1.192 26 H -0.208 1.208 27 H -0.208 1.208 28 C -0.124 4.124 29 H 0.077 0.923 30 H 0.076 0.924 31 H 0.088 0.912 32 H 0.234 0.766 33 H 0.084 0.916 34 H 0.082 0.918 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.092 0.908 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.122 0.878 43 H 0.088 0.912 44 H 0.112 0.888 45 H 0.105 0.895 46 H 0.075 0.925 47 H 0.224 0.776 48 H 0.080 0.920 49 H 0.105 0.895 50 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -7.552 -9.328 -25.204 27.915 hybrid contribution 0.485 0.837 0.145 0.978 sum -7.067 -8.491 -25.058 27.385 Atomic orbital electron populations 1.22131 0.94963 1.02183 1.02653 1.21054 0.94297 0.97139 0.82961 0.89404 1.46015 1.67549 1.14084 1.09529 1.20212 0.77047 0.87015 0.84051 1.90692 1.49643 1.16016 1.84720 1.21651 0.97021 0.96885 0.93760 1.21796 0.94217 1.00748 1.02589 1.21430 0.95755 0.97161 0.97894 1.23190 0.99663 0.97247 0.99591 1.23257 0.96404 0.97529 0.99739 1.21377 0.96277 1.00725 0.93936 1.23338 0.96470 1.00945 0.93767 1.23951 0.94564 0.97423 0.94699 1.68409 1.01802 1.33505 1.13325 1.22478 0.98676 0.94480 0.96576 1.19696 0.84992 0.84304 0.87804 1.90518 1.41072 1.43555 1.70735 1.41890 1.38486 1.32712 1.07449 1.19742 1.23261 1.18050 0.81575 0.87918 1.25258 0.96186 0.96013 1.00642 1.69622 1.26517 1.21801 1.36542 0.85804 0.78124 0.78121 0.82321 1.19236 1.20778 1.20802 1.23955 0.95528 1.02071 0.90818 0.92262 0.92404 0.91222 0.76637 0.91610 0.91774 0.91192 0.89539 0.90828 0.85765 0.85751 0.89306 0.89932 0.87774 0.91239 0.88773 0.89509 0.92466 0.77575 0.91985 0.89492 0.91460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.52 9.44 37.16 0.35 -1.17 16 2 C 0.15 1.48 2.29 -67.93 -0.16 1.32 16 3 H 0.09 1.06 7.48 -51.93 -0.39 0.67 16 4 N -0.72 -6.02 4.77 -53.80 -0.26 -6.28 16 5 C 0.53 5.41 6.48 -10.98 -0.07 5.34 16 6 O -0.53 -7.64 15.19 5.56 0.08 -7.56 16 7 C -0.09 -0.67 0.84 -153.93 -0.13 -0.80 16 8 C -0.14 -0.75 8.42 37.16 0.31 -0.43 16 9 C -0.09 -0.53 5.92 -26.83 -0.16 -0.69 16 10 C -0.18 -1.30 10.78 -35.70 -0.38 -1.68 16 11 C -0.15 -1.19 10.77 -35.70 -0.38 -1.58 16 12 C -0.09 -0.69 5.72 -26.82 -0.15 -0.84 16 13 C -0.13 -1.31 3.35 -89.69 -0.30 -1.61 16 14 C 0.02 0.32 7.42 -2.64 -0.02 0.30 16 15 N -0.45 -7.34 5.65 -239.56 -1.35 -8.69 16 16 C 0.01 0.18 5.28 -4.98 -0.03 0.15 16 17 C 0.45 10.84 7.83 -10.98 -0.09 10.76 16 18 O -0.58 -16.08 16.01 5.54 0.09 -15.99 16 19 N -0.57 -14.72 5.29 -10.96 -0.06 -14.78 16 20 C -0.30 -8.42 9.68 -14.94 -0.14 -8.57 16 21 H 0.10 3.06 7.16 -52.49 -0.38 2.69 16 22 C 0.02 0.55 5.50 -17.47 -0.10 0.45 16 23 N -0.90 -24.95 13.05 55.50 0.72 -24.23 16 24 Si 0.93 21.36 29.55 -169.99 -5.02 16.33 16 25 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 26 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 27 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 28 C 0.01 0.06 7.38 -2.77 -0.02 0.04 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 32 H 0.40 2.41 7.83 -40.82 -0.32 2.09 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.29 7.37 -51.93 -0.38 -0.10 16 35 H 0.07 0.30 8.05 -51.93 -0.42 -0.12 16 36 H 0.09 0.41 7.83 -51.93 -0.41 0.00 16 37 H 0.07 0.44 7.85 -51.93 -0.41 0.04 16 38 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.12 0.85 8.06 -52.49 -0.42 0.43 16 40 H 0.09 0.89 7.01 -51.93 -0.36 0.53 16 41 H 0.08 0.52 7.89 -51.93 -0.41 0.11 16 42 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 43 H 0.07 0.95 7.38 -51.93 -0.38 0.57 16 44 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 45 H 0.09 1.44 8.08 -51.93 -0.42 1.02 16 46 H 0.06 0.95 7.39 -51.93 -0.38 0.56 16 47 H 0.39 9.69 7.90 -40.82 -0.32 9.37 16 48 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 49 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 50 H 0.07 0.77 7.88 -51.93 -0.41 0.36 16 LS Contribution 406.39 15.07 6.12 6.12 Total: -1.00 -34.50 406.39 -9.46 -43.96 By element: Atomic # 1 Polarization: 18.43 SS G_CDS: -8.33 Total: 10.11 kcal Atomic # 6 Polarization: 2.47 SS G_CDS: -1.47 Total: 1.00 kcal Atomic # 7 Polarization: -53.03 SS G_CDS: -0.94 Total: -53.98 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.17 Total: -23.55 kcal Atomic # 14 Polarization: 21.36 SS G_CDS: -5.02 Total: 16.33 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -34.50 -9.46 -43.96 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755383324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.568 kcal (2) G-P(sol) polarization free energy of solvation -34.498 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.930 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.464 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.962 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds