Wall clock time and date at job start Tue Mar 31 2020 18:51:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46732 * 2 1 4 4 N 1.46500 * 109.47108 * 239.99862 * 2 1 3 5 5 C 1.34776 * 119.99974 * 84.99572 * 4 2 1 6 6 O 1.21280 * 119.99866 * 0.02562 * 5 4 2 7 7 C 1.50703 * 119.99983 * 179.97438 * 5 4 2 8 8 C 1.53005 * 110.94407 * 303.98983 * 7 5 4 9 9 C 1.54632 * 111.03840 * 67.97953 * 7 5 4 10 10 C 1.51099 * 104.72486 * 93.39697 * 9 7 5 11 11 C 1.30529 * 111.10307 * 16.43776 * 10 9 7 12 12 C 1.51103 * 111.10472 * 0.02562 * 11 10 9 13 13 C 1.53005 * 109.47289 * 119.99901 * 2 1 3 14 14 C 1.53930 * 113.72968 * 281.87350 * 13 2 1 15 15 N 1.48188 * 86.09850 * 221.95554 * 14 13 2 16 16 C 1.46896 * 111.06984 * 137.52327 * 15 14 13 17 17 C 1.50703 * 109.47516 * 90.56605 * 16 15 14 18 18 O 1.21294 * 119.99881 * 0.02562 * 17 16 15 19 19 N 1.34776 * 120.00432 * 179.97438 * 17 16 15 20 20 C 1.37097 * 120.00334 * 179.97438 * 19 17 16 21 21 H 1.08001 * 119.99918 * 0.02562 * 20 19 17 22 22 C 1.38946 * 120.00280 * 180.02562 * 20 19 17 23 23 N 1.31411 * 119.99734 * 359.97438 * 22 20 19 24 24 Si 1.86800 * 120.00262 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.46896 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47255 * 119.99688 * 24 22 20 27 27 H 1.48502 * 109.47078 * 239.99670 * 24 22 20 28 28 C 1.47957 * 90.79692 * 24.60223 * 15 14 13 29 29 H 1.08996 * 109.47476 * 60.09702 * 1 2 3 30 30 H 1.09002 * 109.47034 * 180.08961 * 1 2 3 31 31 H 1.08997 * 109.47294 * 300.08480 * 1 2 3 32 32 H 0.96999 * 120.00119 * 265.00061 * 4 2 1 33 33 H 1.09001 * 109.47040 * 296.01310 * 8 7 5 34 34 H 1.09003 * 109.47162 * 56.01114 * 8 7 5 35 35 H 1.09002 * 109.47111 * 176.00897 * 8 7 5 36 36 H 1.09003 * 110.38895 * 212.21190 * 9 7 5 37 37 H 1.09007 * 110.38639 * 334.58400 * 9 7 5 38 38 H 1.07998 * 124.44672 * 196.45994 * 10 9 7 39 39 H 1.07999 * 124.44370 * 180.02562 * 11 10 9 40 40 H 1.08999 * 110.38358 * 224.75322 * 12 11 10 41 41 H 1.09003 * 110.47979 * 102.42144 * 12 11 10 42 42 H 1.09001 * 112.93391 * 53.43751 * 13 2 1 43 43 H 1.09001 * 113.76582 * 336.23959 * 14 13 2 44 44 H 1.09004 * 113.75863 * 107.60218 * 14 13 2 45 45 H 1.09005 * 109.47422 * 210.56693 * 16 15 14 46 46 H 1.09004 * 109.47480 * 330.56485 * 16 15 14 47 47 H 0.97000 * 119.99951 * 0.02562 * 19 17 16 48 48 H 0.97000 * 119.99935 * 180.02562 * 23 22 20 49 49 H 1.08999 * 113.75657 * 221.08578 * 28 15 14 50 50 H 1.08995 * 113.86207 * 89.73577 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6906 -1.1961 5 6 2.1470 -0.0183 -2.3572 6 8 1.8589 1.1585 -2.4115 7 6 2.6499 -0.7286 -3.5875 8 6 4.0108 -1.3773 -3.3266 9 6 1.6233 -1.7729 -4.0841 10 6 0.7963 -1.0389 -5.1138 11 6 1.3923 0.0555 -5.5020 12 6 2.7165 0.2335 -4.7964 13 6 2.0401 -0.7212 1.2493 14 6 1.9732 0.1327 2.5282 15 7 3.3109 -0.4202 2.8459 16 6 4.2038 0.6238 3.3663 17 6 4.0863 0.6829 4.8676 18 8 3.3332 -0.0708 5.4471 19 7 4.8188 1.5726 5.5664 20 6 4.7115 1.6268 6.9321 21 1 4.0403 0.9562 7.4480 22 6 5.4663 2.5443 7.6525 23 7 6.2834 3.3599 7.0248 24 14 5.3206 2.6176 9.5134 25 1 4.3403 1.6015 9.9735 26 1 6.6452 2.3407 10.1249 27 1 4.8601 3.9693 9.9210 28 6 3.5700 -0.6728 1.4113 29 1 -0.3634 0.5123 -0.8908 30 1 -0.3633 -1.0277 0.0016 31 1 -0.3634 0.5151 0.8892 32 1 2.2490 -1.6318 -1.1526 33 1 4.7482 -0.6026 -3.1160 34 1 3.9353 -2.0491 -2.4716 35 1 4.3187 -1.9423 -4.2065 36 1 2.1344 -2.6202 -4.5414 37 1 0.9935 -2.1081 -3.2599 38 1 -0.1623 -1.3754 -5.4802 39 1 0.9916 0.7435 -6.2318 40 1 2.8300 1.2628 -4.4560 41 1 3.5400 -0.0407 -5.4558 42 1 1.6179 -1.7194 1.3656 43 1 1.9751 1.2064 2.3402 44 1 1.1924 -0.1772 3.2229 45 1 5.2328 0.3921 3.0913 46 1 3.9225 1.5875 2.9416 47 1 5.4214 2.1752 5.1030 48 1 6.8106 4.0003 7.5277 49 1 4.0627 -1.6251 1.2151 50 1 4.0402 0.1636 0.8942 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001755383324.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:51:29 Heat of formation + Delta-G solvation = -49.628194 kcal Electronic energy + Delta-G solvation = -28957.285520 eV Core-core repulsion = 24984.512841 eV Total energy + Delta-G solvation = -3972.772679 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.82670 -41.08784 -39.67487 -38.57932 -36.36615 -35.89428 -33.42083 -33.22380 -31.87883 -30.53409 -29.08357 -27.45453 -27.07173 -26.47042 -25.71420 -24.12482 -22.29225 -21.12172 -20.99580 -20.03576 -19.87237 -19.76449 -18.03781 -17.81599 -17.38985 -16.75513 -16.71590 -16.45060 -16.32792 -15.95871 -15.67649 -15.50803 -15.13650 -14.81491 -14.30134 -14.08039 -13.95242 -13.76886 -13.70210 -13.63362 -13.52154 -13.39756 -13.12784 -13.04009 -12.98639 -12.85909 -12.46514 -12.41981 -12.17507 -12.13461 -12.07050 -11.90933 -11.84341 -11.61417 -11.58277 -11.51030 -10.74062 -10.38688 -10.13020 -10.02100 -9.77870 -9.62381 -8.47685 -5.96607 1.35550 1.38259 1.40325 1.54964 1.66734 2.04462 2.12246 2.27704 2.76650 3.18259 3.33827 3.41898 3.45681 3.62488 3.68323 3.80760 4.08060 4.14101 4.16380 4.20747 4.32767 4.35882 4.39280 4.47731 4.49778 4.51482 4.52998 4.72344 4.75424 4.77500 4.79926 4.82976 4.84429 4.94947 4.96594 5.04755 5.07443 5.16400 5.18438 5.31848 5.33534 5.39222 5.42218 5.53704 5.65634 5.89234 5.98245 6.07867 6.59473 6.60334 7.12095 7.30311 7.55430 8.11718 8.70093 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.027254 B = 0.001938 C = 0.001900 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1027.119958 B =14442.988892 C =14731.018162 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.158 3.842 3 H 0.064 0.936 4 N -0.707 5.707 5 C 0.527 3.473 6 O -0.582 6.582 7 C -0.086 4.086 8 C -0.134 4.134 9 C -0.082 4.082 10 C -0.180 4.180 11 C -0.174 4.174 12 C -0.089 4.089 13 C -0.097 4.097 14 C 0.013 3.987 15 N -0.480 5.480 16 C 0.023 3.977 17 C 0.442 3.558 18 O -0.617 6.617 19 N -0.577 5.577 20 C -0.332 4.332 21 H 0.078 0.922 22 C -0.015 4.015 23 N -0.922 5.922 24 Si 0.994 3.006 25 H -0.273 1.273 26 H -0.270 1.270 27 H -0.271 1.271 28 C 0.013 3.987 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.067 0.933 32 H 0.415 0.585 33 H 0.055 0.945 34 H 0.079 0.921 35 H 0.087 0.913 36 H 0.110 0.890 37 H 0.079 0.921 38 H 0.136 0.864 39 H 0.126 0.874 40 H 0.060 0.940 41 H 0.098 0.902 42 H 0.122 0.878 43 H 0.068 0.932 44 H 0.077 0.923 45 H 0.106 0.894 46 H 0.074 0.926 47 H 0.395 0.605 48 H 0.277 0.723 49 H 0.108 0.892 50 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.622 -11.000 -27.186 30.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.053 3.947 3 H 0.082 0.918 4 N -0.358 5.358 5 C 0.315 3.685 6 O -0.462 6.462 7 C -0.089 4.089 8 C -0.191 4.191 9 C -0.119 4.119 10 C -0.197 4.197 11 C -0.192 4.192 12 C -0.126 4.126 13 C -0.116 4.116 14 C -0.116 4.116 15 N -0.203 5.203 16 C -0.108 4.108 17 C 0.230 3.770 18 O -0.503 6.503 19 N -0.215 5.215 20 C -0.462 4.462 21 H 0.096 0.904 22 C -0.215 4.215 23 N -0.563 5.563 24 Si 0.818 3.182 25 H -0.198 1.198 26 H -0.195 1.195 27 H -0.196 1.196 28 C -0.115 4.115 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.086 0.914 32 H 0.252 0.748 33 H 0.074 0.926 34 H 0.098 0.902 35 H 0.106 0.894 36 H 0.128 0.872 37 H 0.098 0.902 38 H 0.153 0.847 39 H 0.144 0.856 40 H 0.079 0.921 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.124 0.876 46 H 0.092 0.908 47 H 0.229 0.771 48 H 0.087 0.913 49 H 0.126 0.874 50 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -7.104 -11.049 -26.250 29.353 hybrid contribution 0.317 1.367 0.428 1.467 sum -6.786 -9.682 -25.822 28.400 Atomic orbital electron populations 1.22082 0.94499 1.03071 1.01827 1.20824 0.94545 0.96038 0.83311 0.91755 1.45859 1.66735 1.14673 1.08558 1.20770 0.76180 0.86533 0.85038 1.90678 1.51768 1.18247 1.85501 1.21666 0.98483 0.96859 0.91923 1.21829 0.92479 1.00700 1.04131 1.21492 0.95418 0.97176 0.97837 1.23471 1.00006 0.96980 0.99286 1.23394 0.96843 0.98349 1.00636 1.21398 0.97108 0.99438 0.94634 1.23124 0.95726 1.00818 0.91980 1.23988 0.93287 0.98026 0.96302 1.68381 1.02380 1.33089 1.16409 1.22344 1.00461 0.96258 0.91782 1.20795 0.83237 0.82609 0.90380 1.90479 1.42491 1.44874 1.72436 1.41977 1.39128 1.33426 1.06971 1.19693 1.24361 1.19048 0.83059 0.90398 1.26067 0.95316 0.95082 1.05024 1.69683 1.26528 1.21852 1.38230 0.84854 0.78347 0.78269 0.76759 1.19783 1.19494 1.19594 1.24041 0.96493 1.03244 0.87710 0.93755 0.90607 0.91423 0.74796 0.92607 0.90240 0.89379 0.87168 0.90203 0.84655 0.85602 0.92106 0.88353 0.86036 0.91354 0.90440 0.87590 0.90850 0.77130 0.91320 0.87402 0.90869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 9.44 71.98 0.68 -2.10 16 2 C 0.16 2.90 2.29 44.99 0.10 3.00 16 3 H 0.06 1.54 7.48 -2.39 -0.02 1.52 16 4 N -0.71 -10.31 4.77 -442.52 -2.11 -12.42 16 5 C 0.53 10.19 6.48 87.66 0.57 10.76 16 6 O -0.58 -16.97 15.19 -3.03 -0.05 -17.01 16 7 C -0.09 -1.12 0.84 -51.81 -0.04 -1.16 16 8 C -0.13 -1.08 8.42 71.98 0.61 -0.48 16 9 C -0.08 -0.79 5.92 30.53 0.18 -0.61 16 10 C -0.18 -2.29 10.78 26.26 0.28 -2.01 16 11 C -0.17 -2.65 10.77 26.26 0.28 -2.37 16 12 C -0.09 -1.38 5.72 30.54 0.17 -1.20 16 13 C -0.10 -1.82 3.35 -10.15 -0.03 -1.86 16 14 C 0.01 0.37 7.42 86.36 0.64 1.01 16 15 N -0.48 -15.17 5.65 -911.84 -5.15 -20.32 16 16 C 0.02 0.83 5.28 85.56 0.45 1.28 16 17 C 0.44 21.83 7.83 87.66 0.69 22.52 16 18 O -0.62 -35.42 16.01 -3.07 -0.05 -35.47 16 19 N -0.58 -30.56 5.29 -306.98 -1.62 -32.18 16 20 C -0.33 -19.32 9.68 84.04 0.81 -18.51 16 21 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 22 C -0.02 -0.84 5.50 84.93 0.47 -0.38 16 23 N -0.92 -50.69 13.05 21.66 0.28 -50.41 16 24 Si 0.99 43.71 29.55 68.60 2.03 45.74 16 25 H -0.27 -12.14 7.11 99.48 0.71 -11.43 16 26 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 27 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 28 C 0.01 0.28 7.38 86.41 0.64 0.92 16 29 H 0.04 0.93 8.14 -2.39 -0.02 0.91 16 30 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 31 H 0.07 1.23 8.08 -2.39 -0.02 1.21 16 32 H 0.41 3.55 7.83 -92.71 -0.73 2.82 16 33 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 34 H 0.08 0.40 7.37 -2.39 -0.02 0.38 16 35 H 0.09 0.43 8.05 -2.39 -0.02 0.41 16 36 H 0.11 0.59 7.83 -2.39 -0.02 0.57 16 37 H 0.08 0.70 7.85 -2.38 -0.02 0.68 16 38 H 0.14 1.37 8.06 -2.91 -0.02 1.34 16 39 H 0.13 1.75 8.06 -2.91 -0.02 1.72 16 40 H 0.06 1.29 7.01 -2.39 -0.02 1.27 16 41 H 0.10 1.14 7.89 -2.39 -0.02 1.12 16 42 H 0.12 1.94 8.14 -2.39 -0.02 1.93 16 43 H 0.07 1.88 7.38 -2.39 -0.02 1.87 16 44 H 0.08 2.38 8.14 -2.39 -0.02 2.36 16 45 H 0.11 3.34 8.08 -2.38 -0.02 3.32 16 46 H 0.07 2.37 7.39 -2.38 -0.02 2.35 16 47 H 0.40 19.88 7.90 -92.71 -0.73 19.14 16 48 H 0.28 14.21 8.31 -92.71 -0.77 13.44 16 49 H 0.11 1.85 8.14 -2.39 -0.02 1.83 16 50 H 0.07 1.48 7.88 -2.39 -0.02 1.47 16 Total: -1.00 -77.19 406.39 -0.68 -77.87 By element: Atomic # 1 Polarization: 35.90 SS G_CDS: -0.51 Total: 35.39 kcal Atomic # 6 Polarization: 2.31 SS G_CDS: 6.50 Total: 8.81 kcal Atomic # 7 Polarization: -106.72 SS G_CDS: -8.60 Total: -115.33 kcal Atomic # 8 Polarization: -52.39 SS G_CDS: -0.10 Total: -52.48 kcal Atomic # 14 Polarization: 43.71 SS G_CDS: 2.03 Total: 45.74 kcal Total: -77.19 -0.68 -77.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001755383324.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.241 kcal (2) G-P(sol) polarization free energy of solvation -77.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.946 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.869 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.628 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds