Wall clock time and date at job start Tue Mar 31 2020 18:56:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46869 * 2 1 4 4 C 1.50701 * 109.47146 * 240.00533 * 2 1 3 5 5 O 1.21274 * 120.00297 * 251.17548 * 4 2 1 6 6 N 1.34783 * 120.00157 * 71.16891 * 4 2 1 7 7 C 1.46500 * 119.99672 * 4.98487 * 6 4 2 8 8 C 1.46494 * 120.00081 * 184.97760 * 6 4 2 9 9 C 1.50706 * 109.47134 * 90.00590 * 8 6 4 10 10 H 1.07999 * 119.99299 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00130 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99877 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00057 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47033 * 90.00083 * 13 11 9 15 15 H 1.48500 * 109.47180 * 210.00430 * 13 11 9 16 16 H 1.48505 * 109.47457 * 330.00504 * 13 11 9 17 17 N 1.46901 * 109.47733 * 120.00441 * 2 1 3 18 18 C 1.46954 * 110.99503 * 58.79449 * 17 2 1 19 19 C 1.53054 * 109.36261 * 176.81383 * 18 17 2 20 20 N 1.46960 * 109.36093 * 58.40321 * 19 18 17 21 21 C 1.46902 * 110.99825 * 176.81011 * 20 19 18 22 22 C 1.50702 * 109.47514 * 293.80427 * 21 20 19 23 23 C 1.34513 * 125.78985 * 89.70979 * 22 21 20 24 24 C 1.41382 * 106.83922 * 179.89293 * 23 22 21 25 25 C 1.34515 * 106.83958 * 0.37578 * 24 23 22 26 26 O 1.34299 * 108.42344 * 359.76753 * 25 24 23 27 27 C 1.46955 * 110.88469 * 300.67794 * 20 19 18 28 28 C 1.46956 * 110.99801 * 295.00310 * 17 2 1 29 29 H 1.08998 * 109.46816 * 188.10006 * 1 2 3 30 30 H 1.08998 * 109.46722 * 308.09670 * 1 2 3 31 31 H 1.08997 * 109.47705 * 68.09958 * 1 2 3 32 32 H 1.09004 * 109.47562 * 94.23915 * 7 6 4 33 33 H 1.08996 * 109.46829 * 214.23891 * 7 6 4 34 34 H 1.09002 * 109.47073 * 334.24024 * 7 6 4 35 35 H 1.09000 * 109.47012 * 210.00554 * 8 6 4 36 36 H 1.08996 * 109.47323 * 330.00596 * 8 6 4 37 37 H 0.96993 * 120.00133 * 179.97438 * 12 11 9 38 38 H 1.08995 * 109.49607 * 296.78243 * 18 17 2 39 39 H 1.09008 * 109.48971 * 56.85214 * 18 17 2 40 40 H 1.08999 * 109.48940 * 298.43770 * 19 18 17 41 41 H 1.09000 * 109.50920 * 178.38257 * 19 18 17 42 42 H 1.09011 * 109.46990 * 53.80217 * 21 20 19 43 43 H 1.08999 * 109.47317 * 173.79908 * 21 20 19 44 44 H 1.08000 * 126.58349 * 0.03180 * 23 22 21 45 45 H 1.08001 * 126.58072 * 180.16607 * 24 23 22 46 46 H 1.08009 * 125.78997 * 179.75040 * 25 24 23 47 47 H 1.08999 * 109.48585 * 299.35943 * 27 20 19 48 48 H 1.08992 * 109.49066 * 179.28476 * 27 20 19 49 49 H 1.09004 * 109.48771 * 303.15280 * 28 17 2 50 50 H 1.08999 * 109.49147 * 63.21630 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.5540 -1.8006 -1.1309 6 7 1.9018 -0.1339 -2.4419 7 6 1.3720 1.2275 -2.5520 8 6 2.2898 -0.8688 -3.6484 9 6 1.1053 -1.6421 -4.1683 10 1 0.1584 -1.5915 -3.6513 11 6 1.2308 -2.4149 -5.3031 12 7 0.1970 -3.0892 -5.7570 13 14 2.8688 -2.5029 -6.1967 14 1 3.6736 -3.6227 -5.6458 15 1 2.6310 -2.7296 -7.6449 16 1 3.6040 -1.2262 -6.0098 17 7 2.0198 -0.6926 1.1993 18 6 1.5252 -2.0755 1.2476 19 6 2.1203 -2.7850 2.4663 20 7 1.7492 -2.0531 3.6855 21 6 2.2389 -2.7457 4.8848 22 6 1.5240 -4.0644 5.0306 23 6 1.9221 -5.2372 4.5057 24 6 0.9646 -6.2038 4.8900 25 6 0.0344 -5.5623 5.6198 26 8 0.3784 -4.2667 5.7017 27 6 2.2437 -0.6701 3.6372 28 6 1.6487 0.0392 2.4185 29 1 -0.3633 -1.0174 0.1448 30 1 -0.3633 0.6341 0.8087 31 1 -0.3634 0.3833 -0.9534 32 1 2.1982 1.9380 -2.5783 33 1 0.7868 1.3167 -3.4672 34 1 0.7368 1.4408 -1.6923 35 1 2.6269 -0.1652 -4.4096 36 1 3.0980 -1.5597 -3.4088 37 1 0.2852 -3.6326 -6.5556 38 1 0.4380 -2.0705 1.3248 39 1 1.8233 -2.6003 0.3399 40 1 3.2061 -2.8141 2.3759 41 1 1.7325 -3.8022 2.5206 42 1 3.3105 -2.9218 4.7906 43 1 2.0478 -2.1298 5.7636 44 1 2.8049 -5.4081 3.9075 45 1 0.9760 -7.2550 4.6421 46 1 -0.8409 -6.0127 6.0642 47 1 3.3309 -0.6752 3.5600 48 1 1.9456 -0.1454 4.5448 49 1 2.0367 1.0564 2.3644 50 1 0.5628 0.0683 2.5089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053441249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:46 Heat of formation + Delta-G solvation = 23.412571 kcal Electronic energy + Delta-G solvation = -30004.224366 eV Core-core repulsion = 26034.618972 eV Total energy + Delta-G solvation = -3969.605394 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.66202 -40.15163 -38.55108 -35.96878 -34.94285 -33.12484 -32.64430 -31.74249 -30.80898 -29.84275 -28.26755 -26.89067 -26.08180 -24.59690 -23.67306 -23.27209 -21.84972 -21.58276 -20.50681 -19.48043 -18.42634 -17.47065 -16.97186 -16.71916 -16.39001 -16.00069 -15.35987 -15.26621 -14.84641 -14.82341 -14.58380 -14.46330 -14.11524 -13.75733 -13.64831 -13.27440 -13.02397 -12.92169 -12.80732 -12.50672 -12.38187 -12.31257 -12.19798 -11.94275 -11.79932 -11.62992 -11.54550 -11.25840 -11.04935 -10.91613 -10.69040 -10.51723 -10.51104 -10.13875 -9.99935 -9.54383 -8.80773 -8.72282 -8.59501 -8.42664 -8.04450 -7.68119 -6.09592 -4.08539 1.58160 2.48144 2.86523 3.29228 3.31978 3.35242 3.37455 3.61692 3.85031 4.20845 4.39360 4.52573 4.78039 4.86008 4.90169 4.91076 5.01825 5.15726 5.17927 5.21218 5.25242 5.25523 5.31499 5.43409 5.49190 5.55143 5.63047 5.68446 5.70176 5.79316 5.81771 5.83942 5.88782 5.92729 5.96347 6.07043 6.16000 6.34785 6.37106 6.46636 6.68690 6.79067 6.86721 6.94937 7.04876 7.16455 7.27340 7.36799 7.60455 8.26094 8.46502 8.92038 9.00525 9.50952 11.03689 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.002854 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.751919 B = 9809.055198 C =11035.824886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.066 3.934 3 H 0.099 0.901 4 C 0.519 3.481 5 O -0.527 6.527 6 N -0.596 5.596 7 C 0.075 3.925 8 C 0.216 3.784 9 C -0.529 4.529 10 H 0.074 0.926 11 C 0.072 3.928 12 N -0.897 5.897 13 Si 0.877 3.123 14 H -0.273 1.273 15 H -0.285 1.285 16 H -0.266 1.266 17 N -0.517 5.517 18 C 0.035 3.965 19 C 0.058 3.942 20 N -0.539 5.539 21 C 0.133 3.867 22 C 0.001 3.999 23 C -0.206 4.206 24 C -0.213 4.213 25 C -0.044 4.044 26 O -0.170 6.170 27 C 0.062 3.938 28 C 0.054 3.946 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.046 0.954 33 H 0.074 0.926 34 H 0.067 0.933 35 H 0.029 0.971 36 H 0.038 0.962 37 H 0.264 0.736 38 H 0.038 0.962 39 H 0.127 0.873 40 H 0.044 0.956 41 H 0.081 0.919 42 H 0.067 0.933 43 H 0.090 0.910 44 H 0.146 0.854 45 H 0.147 0.853 46 H 0.201 0.799 47 H 0.044 0.956 48 H 0.078 0.922 49 H 0.078 0.922 50 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.221 4.961 22.478 23.126 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.245 4.245 2 C -0.046 4.046 3 H 0.117 0.883 4 C 0.305 3.695 5 O -0.404 6.404 6 N -0.328 5.328 7 C -0.069 4.069 8 C 0.095 3.905 9 C -0.568 4.568 10 H 0.092 0.908 11 C -0.130 4.130 12 N -0.536 5.536 13 Si 0.703 3.297 14 H -0.199 1.199 15 H -0.211 1.211 16 H -0.191 1.191 17 N -0.241 5.241 18 C -0.092 4.092 19 C -0.070 4.070 20 N -0.264 5.264 21 C 0.005 3.995 22 C -0.050 4.050 23 C -0.226 4.226 24 C -0.232 4.232 25 C -0.112 4.112 26 O -0.066 6.066 27 C -0.066 4.066 28 C -0.074 4.074 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.064 0.936 33 H 0.093 0.907 34 H 0.085 0.915 35 H 0.047 0.953 36 H 0.056 0.944 37 H 0.074 0.926 38 H 0.056 0.944 39 H 0.145 0.855 40 H 0.062 0.938 41 H 0.099 0.901 42 H 0.085 0.915 43 H 0.108 0.892 44 H 0.164 0.836 45 H 0.165 0.835 46 H 0.217 0.783 47 H 0.063 0.937 48 H 0.097 0.903 49 H 0.096 0.904 50 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 2.304 4.505 22.502 23.064 hybrid contribution 0.599 -0.364 -0.741 1.020 sum 2.903 4.141 21.761 22.341 Atomic orbital electron populations 1.22472 0.95348 1.03515 1.03123 1.21615 0.94296 0.98572 0.90150 0.88324 1.20071 0.79414 0.86061 0.83954 1.90495 1.43750 1.20951 1.85244 1.47772 1.62989 1.15133 1.06952 1.21845 0.98487 0.83384 1.03205 1.19658 0.97131 0.92160 0.81556 1.21325 0.97257 1.27566 1.10618 0.90810 1.24852 0.96489 0.94774 0.96876 1.69893 1.30008 1.30057 1.23631 0.86845 0.84519 0.79277 0.79015 1.19890 1.21115 1.19058 1.62151 1.59042 1.02587 1.00317 1.22779 0.97311 0.88937 1.00213 1.22280 0.98862 0.97670 0.88148 1.62172 1.59995 1.02371 1.01899 1.20410 0.95226 0.89107 0.94726 1.22200 0.87432 0.96824 0.98535 1.21645 1.02991 0.92390 1.05571 1.21835 0.96697 1.01033 1.03662 1.24011 1.01699 0.81069 1.04374 1.84015 1.35471 1.28029 1.59067 1.22121 0.98109 0.88288 0.98069 1.22178 0.98950 0.97076 0.89195 0.91287 0.91885 0.90613 0.93575 0.90678 0.91474 0.95284 0.94404 0.92562 0.94410 0.85534 0.93809 0.90067 0.91519 0.89172 0.83589 0.83518 0.78256 0.93725 0.90332 0.90393 0.93675 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.57 8.03 37.16 0.30 -2.27 16 2 C 0.07 0.99 1.92 -68.86 -0.13 0.86 16 3 H 0.10 1.26 7.41 -51.93 -0.38 0.87 16 4 C 0.52 10.42 6.80 -10.98 -0.07 10.35 16 5 O -0.53 -12.56 13.06 5.56 0.07 -12.49 16 6 N -0.60 -12.13 2.86 -182.96 -0.52 -12.65 16 7 C 0.07 1.12 9.80 59.85 0.59 1.71 16 8 C 0.22 5.25 4.29 -5.19 -0.02 5.23 16 9 C -0.53 -15.05 9.94 -34.44 -0.34 -15.40 16 10 H 0.07 2.29 8.06 -52.49 -0.42 1.87 16 11 C 0.07 2.10 5.47 -17.82 -0.10 2.01 16 12 N -0.90 -27.56 13.96 55.43 0.77 -26.78 16 13 Si 0.88 21.57 27.47 -169.99 -4.67 16.90 16 14 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 15 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 16 H -0.27 -6.17 6.54 56.52 0.37 -5.80 16 17 N -0.52 -7.60 4.57 -227.87 -1.04 -8.64 16 18 C 0.03 0.56 4.74 -3.77 -0.02 0.54 16 19 C 0.06 0.80 5.37 -3.76 -0.02 0.78 16 20 N -0.54 -6.37 4.70 -235.90 -1.11 -7.48 16 21 C 0.13 1.32 5.50 -4.97 -0.03 1.30 16 22 C 0.00 0.01 6.24 -35.62 -0.22 -0.21 16 23 C -0.21 -2.32 9.30 -39.70 -0.37 -2.69 16 24 C -0.21 -2.20 10.91 -39.70 -0.43 -2.64 16 25 C -0.04 -0.42 12.09 29.42 0.36 -0.07 16 26 O -0.17 -2.03 10.65 5.72 0.06 -1.97 16 27 C 0.06 0.64 5.61 -3.77 -0.02 0.62 16 28 C 0.05 0.62 5.25 -3.77 -0.02 0.60 16 29 H 0.07 1.09 6.04 -51.93 -0.31 0.78 16 30 H 0.06 0.71 7.01 -51.93 -0.36 0.35 16 31 H 0.08 1.07 5.99 -51.93 -0.31 0.75 16 32 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.07 1.18 8.10 -51.93 -0.42 0.76 16 34 H 0.07 0.83 4.44 -51.93 -0.23 0.60 16 35 H 0.03 0.68 7.13 -51.93 -0.37 0.31 16 36 H 0.04 0.99 6.79 -51.93 -0.35 0.64 16 37 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 38 H 0.04 0.63 6.29 -51.93 -0.33 0.30 16 39 H 0.13 2.52 5.02 -51.92 -0.26 2.26 16 40 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 41 H 0.08 1.14 6.13 -51.93 -0.32 0.83 16 42 H 0.07 0.60 8.12 -51.92 -0.42 0.17 16 43 H 0.09 0.76 8.03 -51.93 -0.42 0.34 16 44 H 0.15 1.51 8.06 -52.49 -0.42 1.08 16 45 H 0.15 1.23 8.06 -52.49 -0.42 0.81 16 46 H 0.20 1.18 8.06 -52.48 -0.42 0.76 16 47 H 0.04 0.47 8.14 -51.93 -0.42 0.05 16 48 H 0.08 0.64 8.07 -51.93 -0.42 0.22 16 49 H 0.08 0.74 8.12 -51.93 -0.42 0.32 16 50 H 0.05 0.53 6.78 -51.93 -0.35 0.17 16 LS Contribution 383.70 15.07 5.78 5.78 Total: -1.00 -34.40 383.70 -9.02 -43.43 By element: Atomic # 1 Polarization: 11.01 SS G_CDS: -7.81 Total: 3.20 kcal Atomic # 6 Polarization: 1.26 SS G_CDS: -0.56 Total: 0.70 kcal Atomic # 7 Polarization: -53.65 SS G_CDS: -1.90 Total: -55.55 kcal Atomic # 8 Polarization: -14.59 SS G_CDS: 0.13 Total: -14.46 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.67 Total: 16.90 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -34.40 -9.02 -43.43 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053441249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.840 kcal (2) G-P(sol) polarization free energy of solvation -34.405 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.427 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds