Wall clock time and date at job start Tue Mar 31 2020 18:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09006 * 109.46869 * 2 1 4 4 C 1.50701 * 109.47146 * 240.00533 * 2 1 3 5 5 O 1.21274 * 120.00297 * 251.17548 * 4 2 1 6 6 N 1.34783 * 120.00157 * 71.16891 * 4 2 1 7 7 C 1.46500 * 119.99672 * 4.98487 * 6 4 2 8 8 C 1.46494 * 120.00081 * 184.97760 * 6 4 2 9 9 C 1.50706 * 109.47134 * 90.00590 * 8 6 4 10 10 H 1.07999 * 119.99299 * 359.97438 * 9 8 6 11 11 C 1.37872 * 120.00130 * 180.02562 * 9 8 6 12 12 N 1.31511 * 119.99877 * 180.02562 * 11 9 8 13 13 Si 1.86796 * 120.00057 * 359.97438 * 11 9 8 14 14 H 1.48500 * 109.47033 * 90.00083 * 13 11 9 15 15 H 1.48500 * 109.47180 * 210.00430 * 13 11 9 16 16 H 1.48505 * 109.47457 * 330.00504 * 13 11 9 17 17 N 1.46901 * 109.47733 * 120.00441 * 2 1 3 18 18 C 1.46954 * 110.99503 * 58.79449 * 17 2 1 19 19 C 1.53054 * 109.36261 * 176.81383 * 18 17 2 20 20 N 1.46960 * 109.36093 * 58.40321 * 19 18 17 21 21 C 1.46902 * 110.99825 * 176.81011 * 20 19 18 22 22 C 1.50702 * 109.47514 * 293.80427 * 21 20 19 23 23 C 1.34513 * 125.78985 * 89.70979 * 22 21 20 24 24 C 1.41382 * 106.83922 * 179.89293 * 23 22 21 25 25 C 1.34515 * 106.83958 * 0.37578 * 24 23 22 26 26 O 1.34299 * 108.42344 * 359.76753 * 25 24 23 27 27 C 1.46955 * 110.88469 * 300.67794 * 20 19 18 28 28 C 1.46956 * 110.99801 * 295.00310 * 17 2 1 29 29 H 1.08998 * 109.46816 * 188.10006 * 1 2 3 30 30 H 1.08998 * 109.46722 * 308.09670 * 1 2 3 31 31 H 1.08997 * 109.47705 * 68.09958 * 1 2 3 32 32 H 1.09004 * 109.47562 * 94.23915 * 7 6 4 33 33 H 1.08996 * 109.46829 * 214.23891 * 7 6 4 34 34 H 1.09002 * 109.47073 * 334.24024 * 7 6 4 35 35 H 1.09000 * 109.47012 * 210.00554 * 8 6 4 36 36 H 1.08996 * 109.47323 * 330.00596 * 8 6 4 37 37 H 0.96993 * 120.00133 * 179.97438 * 12 11 9 38 38 H 1.08995 * 109.49607 * 296.78243 * 18 17 2 39 39 H 1.09008 * 109.48971 * 56.85214 * 18 17 2 40 40 H 1.08999 * 109.48940 * 298.43770 * 19 18 17 41 41 H 1.09000 * 109.50920 * 178.38257 * 19 18 17 42 42 H 1.09011 * 109.46990 * 53.80217 * 21 20 19 43 43 H 1.08999 * 109.47317 * 173.79908 * 21 20 19 44 44 H 1.08000 * 126.58349 * 0.03180 * 23 22 21 45 45 H 1.08001 * 126.58072 * 180.16607 * 24 23 22 46 46 H 1.08009 * 125.78997 * 179.75040 * 25 24 23 47 47 H 1.08999 * 109.48585 * 299.35943 * 27 20 19 48 48 H 1.08992 * 109.49066 * 179.28476 * 27 20 19 49 49 H 1.09004 * 109.48771 * 303.15280 * 28 17 2 50 50 H 1.08999 * 109.49147 * 63.21630 * 28 17 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2305 5 8 2.5540 -1.8006 -1.1309 6 7 1.9018 -0.1339 -2.4419 7 6 1.3720 1.2275 -2.5520 8 6 2.2898 -0.8688 -3.6484 9 6 1.1053 -1.6421 -4.1683 10 1 0.1584 -1.5915 -3.6513 11 6 1.2308 -2.4149 -5.3031 12 7 0.1970 -3.0892 -5.7570 13 14 2.8688 -2.5029 -6.1967 14 1 3.6736 -3.6227 -5.6458 15 1 2.6310 -2.7296 -7.6449 16 1 3.6040 -1.2262 -6.0098 17 7 2.0198 -0.6926 1.1993 18 6 1.5252 -2.0755 1.2476 19 6 2.1203 -2.7850 2.4663 20 7 1.7492 -2.0531 3.6855 21 6 2.2389 -2.7457 4.8848 22 6 1.5240 -4.0644 5.0306 23 6 1.9221 -5.2372 4.5057 24 6 0.9646 -6.2038 4.8900 25 6 0.0344 -5.5623 5.6198 26 8 0.3784 -4.2667 5.7017 27 6 2.2437 -0.6701 3.6372 28 6 1.6487 0.0392 2.4185 29 1 -0.3633 -1.0174 0.1448 30 1 -0.3633 0.6341 0.8087 31 1 -0.3634 0.3833 -0.9534 32 1 2.1982 1.9380 -2.5783 33 1 0.7868 1.3167 -3.4672 34 1 0.7368 1.4408 -1.6923 35 1 2.6269 -0.1652 -4.4096 36 1 3.0980 -1.5597 -3.4088 37 1 0.2852 -3.6326 -6.5556 38 1 0.4380 -2.0705 1.3248 39 1 1.8233 -2.6003 0.3399 40 1 3.2061 -2.8141 2.3759 41 1 1.7325 -3.8022 2.5206 42 1 3.3105 -2.9218 4.7906 43 1 2.0478 -2.1298 5.7636 44 1 2.8049 -5.4081 3.9075 45 1 0.9760 -7.2550 4.6421 46 1 -0.8409 -6.0127 6.0642 47 1 3.3309 -0.6752 3.5600 48 1 1.9456 -0.1454 4.5448 49 1 2.0367 1.0564 2.3644 50 1 0.5628 0.0683 2.5089 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000053441249.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:45 Heat of formation + Delta-G solvation = -2.556466 kcal Electronic energy + Delta-G solvation = -30005.350468 eV Core-core repulsion = 26034.618972 eV Total energy + Delta-G solvation = -3970.731496 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -43.47452 -41.46540 -39.77748 -37.12726 -36.57173 -34.74837 -33.94444 -32.84588 -31.87004 -31.00186 -29.95428 -27.89582 -27.42284 -25.86469 -24.82250 -24.56480 -23.14441 -22.63214 -21.31977 -20.58460 -19.89063 -19.14221 -18.27999 -17.98432 -17.55445 -17.23275 -16.57448 -16.30923 -16.18590 -16.12716 -15.84488 -15.65869 -15.45434 -14.92058 -14.76834 -14.60353 -14.36297 -14.13634 -13.78290 -13.74060 -13.63251 -13.53458 -13.42695 -13.27483 -13.13788 -12.88944 -12.78449 -12.51398 -12.47142 -12.32066 -12.06459 -12.00656 -11.79351 -11.74436 -11.67488 -10.83955 -10.83842 -10.29467 -9.57772 -9.38090 -9.31934 -9.17199 -8.34705 -6.39587 0.77022 1.32062 1.36134 1.44514 1.66917 1.79307 2.11358 2.22676 2.30383 2.94032 2.99878 3.00897 3.62153 3.76021 3.84358 4.03799 4.08580 4.10419 4.12515 4.19888 4.26506 4.28148 4.36317 4.41639 4.48275 4.56027 4.63138 4.64691 4.66620 4.74643 4.83173 4.86393 4.92379 4.92760 4.97121 4.97466 4.99700 5.03350 5.16003 5.20844 5.23621 5.45688 5.57841 5.65116 5.82945 5.88489 6.08601 6.17651 6.23795 6.24856 6.61760 6.73586 7.21694 7.46317 8.82131 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.013894 B = 0.002854 C = 0.002537 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2014.751919 B = 9809.055198 C =11035.824886 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.077 3.923 3 H 0.136 0.864 4 C 0.505 3.495 5 O -0.576 6.576 6 N -0.606 5.606 7 C 0.069 3.931 8 C 0.224 3.776 9 C -0.534 4.534 10 H 0.029 0.971 11 C 0.011 3.989 12 N -0.945 5.945 13 Si 0.947 3.053 14 H -0.278 1.278 15 H -0.275 1.275 16 H -0.238 1.238 17 N -0.526 5.526 18 C 0.043 3.957 19 C 0.071 3.929 20 N -0.546 5.546 21 C 0.135 3.865 22 C -0.015 4.015 23 C -0.222 4.222 24 C -0.233 4.233 25 C -0.041 4.041 26 O -0.185 6.185 27 C 0.061 3.939 28 C 0.053 3.947 29 H 0.039 0.961 30 H 0.099 0.901 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.064 0.936 34 H 0.096 0.904 35 H 0.049 0.951 36 H 0.018 0.982 37 H 0.268 0.732 38 H 0.026 0.974 39 H 0.082 0.918 40 H 0.035 0.965 41 H 0.070 0.930 42 H 0.076 0.924 43 H 0.111 0.889 44 H 0.146 0.854 45 H 0.162 0.838 46 H 0.236 0.764 47 H 0.045 0.955 48 H 0.109 0.891 49 H 0.107 0.893 50 H 0.046 0.954 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.191 7.630 24.268 25.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C -0.035 4.035 3 H 0.154 0.846 4 C 0.293 3.707 5 O -0.456 6.456 6 N -0.338 5.338 7 C -0.073 4.073 8 C 0.102 3.898 9 C -0.573 4.573 10 H 0.047 0.953 11 C -0.187 4.187 12 N -0.585 5.585 13 Si 0.770 3.230 14 H -0.203 1.203 15 H -0.200 1.200 16 H -0.161 1.161 17 N -0.250 5.250 18 C -0.085 4.085 19 C -0.057 4.057 20 N -0.271 5.271 21 C 0.008 3.992 22 C -0.065 4.065 23 C -0.242 4.242 24 C -0.252 4.252 25 C -0.108 4.108 26 O -0.081 6.081 27 C -0.066 4.066 28 C -0.074 4.074 29 H 0.058 0.942 30 H 0.117 0.883 31 H 0.090 0.910 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.114 0.886 35 H 0.067 0.933 36 H 0.036 0.964 37 H 0.077 0.923 38 H 0.045 0.955 39 H 0.100 0.900 40 H 0.053 0.947 41 H 0.088 0.912 42 H 0.094 0.906 43 H 0.130 0.870 44 H 0.164 0.836 45 H 0.179 0.821 46 H 0.252 0.748 47 H 0.063 0.937 48 H 0.127 0.873 49 H 0.125 0.875 50 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 3.262 7.238 24.318 25.581 hybrid contribution 0.193 -1.243 -1.231 1.760 sum 3.455 5.995 23.086 24.101 Atomic orbital electron populations 1.22419 0.94431 1.02512 1.04297 1.21612 0.94699 0.99330 0.87844 0.84611 1.21130 0.78490 0.85753 0.85300 1.90494 1.45763 1.23156 1.86169 1.47893 1.63131 1.16837 1.05907 1.22144 1.00015 0.81054 1.04104 1.19305 0.94600 0.92264 0.83679 1.21550 0.97039 1.28299 1.10376 0.95274 1.25832 1.00680 0.94230 0.97927 1.70045 1.32668 1.31281 1.24540 0.85723 0.79322 0.80241 0.77702 1.20345 1.20023 1.16124 1.62140 1.59256 1.02016 1.01626 1.22456 0.96558 0.90175 0.99269 1.22005 0.97874 0.97193 0.88615 1.62143 1.60460 1.03167 1.01368 1.20506 0.95493 0.88740 0.94467 1.22498 0.87646 0.97506 0.98852 1.21863 1.03454 0.93100 1.05784 1.22150 0.96912 1.01864 1.04252 1.24734 1.02274 0.80304 1.03522 1.84008 1.35673 1.29076 1.59345 1.22247 0.98092 0.87320 0.98921 1.22362 0.99289 0.98103 0.87673 0.94183 0.88265 0.90964 0.90262 0.91711 0.88589 0.93295 0.96415 0.92298 0.95545 0.90004 0.94678 0.91187 0.90566 0.87042 0.83586 0.82078 0.74822 0.93703 0.87255 0.87453 0.93584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.68 8.03 71.98 0.58 -4.10 16 2 C 0.08 2.18 1.92 44.17 0.08 2.27 16 3 H 0.14 2.88 7.41 -2.38 -0.02 2.86 16 4 C 0.50 20.49 6.80 87.66 0.60 21.08 16 5 O -0.58 -28.78 13.06 -3.01 -0.04 -28.82 16 6 N -0.61 -24.49 2.86 -851.13 -2.43 -26.92 16 7 C 0.07 1.92 9.80 127.77 1.25 3.17 16 8 C 0.22 10.99 4.29 85.64 0.37 11.36 16 9 C -0.53 -31.53 9.94 25.60 0.25 -31.28 16 10 H 0.03 1.92 8.06 -2.91 -0.02 1.89 16 11 C 0.01 0.67 5.47 84.65 0.46 1.13 16 12 N -0.95 -60.12 13.96 21.44 0.30 -59.82 16 13 Si 0.95 44.92 27.47 68.60 1.88 46.80 16 14 H -0.28 -13.30 7.11 99.48 0.71 -12.60 16 15 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 16 H -0.24 -10.14 6.54 99.48 0.65 -9.49 16 17 N -0.53 -14.86 4.57 -874.85 -3.99 -18.86 16 18 C 0.04 1.45 4.74 86.31 0.41 1.86 16 19 C 0.07 2.02 5.37 86.31 0.46 2.48 16 20 N -0.55 -12.16 4.70 -900.26 -4.23 -16.39 16 21 C 0.13 2.48 5.50 85.56 0.47 2.95 16 22 C -0.01 -0.33 6.24 24.83 0.16 -0.17 16 23 C -0.22 -5.08 9.30 22.19 0.21 -4.87 16 24 C -0.23 -4.75 10.91 22.19 0.24 -4.51 16 25 C -0.04 -0.76 12.09 66.97 0.81 0.05 16 26 O -0.19 -4.24 10.65 -2.47 -0.03 -4.27 16 27 C 0.06 1.08 5.61 86.31 0.48 1.56 16 28 C 0.05 1.03 5.25 86.31 0.45 1.48 16 29 H 0.04 1.29 6.04 -2.39 -0.01 1.27 16 30 H 0.10 1.90 7.01 -2.39 -0.02 1.88 16 31 H 0.07 1.94 5.99 -2.39 -0.01 1.93 16 32 H 0.08 1.72 8.14 -2.39 -0.02 1.70 16 33 H 0.06 1.95 8.10 -2.39 -0.02 1.93 16 34 H 0.10 2.09 4.44 -2.39 -0.01 2.08 16 35 H 0.05 2.20 7.13 -2.39 -0.02 2.19 16 36 H 0.02 0.94 6.79 -2.39 -0.02 0.93 16 37 H 0.27 15.86 8.31 -92.71 -0.77 15.08 16 38 H 0.03 0.92 6.29 -2.39 -0.02 0.91 16 39 H 0.08 3.53 5.02 -2.38 -0.01 3.52 16 40 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 41 H 0.07 2.09 6.13 -2.39 -0.01 2.08 16 42 H 0.08 1.26 8.12 -2.38 -0.02 1.24 16 43 H 0.11 1.58 8.03 -2.39 -0.02 1.56 16 44 H 0.15 3.18 8.06 -2.91 -0.02 3.16 16 45 H 0.16 2.64 8.06 -2.91 -0.02 2.62 16 46 H 0.24 2.27 8.06 -2.91 -0.02 2.25 16 47 H 0.04 0.81 8.14 -2.39 -0.02 0.79 16 48 H 0.11 1.30 8.07 -2.39 -0.02 1.28 16 49 H 0.11 1.50 8.12 -2.38 -0.02 1.48 16 50 H 0.05 0.91 6.78 -2.39 -0.02 0.89 16 Total: -1.00 -80.78 383.70 -0.37 -81.15 By element: Atomic # 1 Polarization: 21.78 SS G_CDS: 0.88 Total: 22.66 kcal Atomic # 6 Polarization: -2.81 SS G_CDS: 7.29 Total: 4.48 kcal Atomic # 7 Polarization: -111.64 SS G_CDS: -10.36 Total: -122.00 kcal Atomic # 8 Polarization: -33.03 SS G_CDS: -0.07 Total: -33.09 kcal Atomic # 14 Polarization: 44.92 SS G_CDS: 1.88 Total: 46.80 kcal Total: -80.78 -0.37 -81.15 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053441249.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.594 kcal (2) G-P(sol) polarization free energy of solvation -80.780 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.151 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds