Wall clock time and date at job start Tue Mar 31 2020 19:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08999 * 109.46638 * 2 1 4 4 N 1.46499 * 109.46981 * 119.99901 * 2 1 3 5 5 C 1.34781 * 119.99898 * 274.99881 * 4 2 1 6 6 O 1.21280 * 119.99984 * 0.02562 * 5 4 2 7 7 C 1.50693 * 119.99893 * 180.02562 * 5 4 2 8 8 C 1.53004 * 109.47426 * 300.00683 * 7 5 4 9 9 C 1.52999 * 109.47090 * 179.97438 * 8 7 5 10 10 C 1.52999 * 109.47429 * 60.00177 * 9 8 7 11 11 C 1.53007 * 109.46767 * 299.99598 * 10 9 8 12 12 C 1.52998 * 109.47520 * 180.02562 * 7 5 4 13 13 C 1.50695 * 109.47356 * 240.00043 * 2 1 3 14 14 O 1.21276 * 120.00159 * 258.19437 * 13 2 1 15 15 N 1.34783 * 120.00075 * 78.19285 * 13 2 1 16 16 C 1.46501 * 119.99667 * 4.67071 * 15 13 2 17 17 C 1.50695 * 109.47627 * 84.50626 * 16 15 13 18 18 H 1.08004 * 119.99718 * 359.97438 * 17 16 15 19 19 C 1.37882 * 120.00458 * 179.97438 * 17 16 15 20 20 N 1.31513 * 119.99564 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 119.99945 * 179.97438 * 19 17 16 22 22 H 1.48496 * 109.47264 * 0.02562 * 21 19 17 23 23 H 1.48506 * 109.46659 * 120.00339 * 21 19 17 24 24 H 1.48497 * 109.47083 * 239.99511 * 21 19 17 25 25 C 1.46500 * 120.00217 * 184.65999 * 15 13 2 26 26 C 1.53003 * 109.46415 * 95.82199 * 25 15 13 27 27 C 1.47205 * 109.46629 * 180.02562 * 26 25 15 28 28 N 7.01398 * 92.77252 * 248.13840 * 2 1 3 29 29 H 1.09004 * 109.47458 * 56.86956 * 1 2 3 30 30 H 1.09002 * 109.46840 * 176.86031 * 1 2 3 31 31 H 1.08998 * 109.47365 * 296.86145 * 1 2 3 32 32 H 0.96995 * 120.00059 * 95.00193 * 4 2 1 33 33 H 1.09003 * 109.46804 * 60.00184 * 7 5 4 34 34 H 1.09000 * 109.46839 * 300.00071 * 8 7 5 35 35 H 1.08996 * 109.47374 * 59.99499 * 8 7 5 36 36 H 1.08994 * 109.46815 * 299.99355 * 9 8 7 37 37 H 1.09008 * 109.46566 * 179.97438 * 9 8 7 38 38 H 1.08995 * 109.46986 * 180.02562 * 10 9 8 39 39 H 1.09000 * 109.47192 * 59.99499 * 10 9 8 40 40 H 1.09003 * 109.47067 * 300.00426 * 11 10 9 41 41 H 1.08997 * 109.47149 * 179.97438 * 11 10 9 42 42 H 1.09005 * 109.46743 * 300.00620 * 12 7 5 43 43 H 1.09000 * 109.46829 * 59.99877 * 12 7 5 44 44 H 1.09001 * 109.47090 * 204.50498 * 16 15 13 45 45 H 1.09003 * 109.47364 * 324.50121 * 16 15 13 46 46 H 0.96996 * 119.99788 * 180.02562 * 20 19 17 47 47 H 1.08995 * 109.47588 * 215.81826 * 25 15 13 48 48 H 1.09001 * 109.47045 * 335.82559 * 25 15 13 49 49 H 1.09002 * 109.47389 * 299.99514 * 26 25 15 50 50 H 1.08997 * 109.47558 * 60.00138 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.1470 -0.0182 2.3572 6 8 1.8582 1.1585 2.4117 7 6 2.6498 -0.7284 3.5875 8 6 1.7064 -1.8828 3.9314 9 6 2.2173 -2.6042 5.1802 10 6 2.2690 -1.6215 6.3517 11 6 3.2126 -0.4672 6.0077 12 6 2.7006 0.2545 4.7589 13 6 2.0324 -0.7104 -1.2304 14 8 2.4371 -1.8507 -1.1495 15 7 2.0319 -0.0784 -2.4209 16 6 1.6399 1.3309 -2.5018 17 6 2.8296 2.2020 -2.1909 18 1 3.7824 1.7509 -1.9561 19 6 2.7018 3.5748 -2.2063 20 7 1.5417 4.1240 -2.4928 21 14 4.1765 4.6544 -1.8202 22 1 5.3553 3.7982 -1.5334 23 1 4.4703 5.5263 -2.9859 24 1 3.8761 5.4973 -0.6351 25 6 2.4235 -0.8006 -3.6338 26 6 1.1722 -1.3229 -4.3427 27 6 1.5657 -2.0491 -5.5611 28 7 1.8693 -2.6087 -6.5020 29 1 -0.3634 0.5617 -0.8606 30 1 -0.3633 -1.0262 -0.0563 31 1 -0.3634 0.4643 0.9167 32 1 2.2490 -1.6317 1.1527 33 1 3.6492 -1.1202 3.3978 34 1 0.7070 -1.4910 4.1210 35 1 1.6698 -2.5831 3.0970 36 1 3.2165 -2.9960 4.9901 37 1 1.5449 -3.4263 5.4254 38 1 2.6334 -2.1354 7.2411 39 1 1.2698 -1.2297 6.5417 40 1 4.2118 -0.8590 5.8177 41 1 3.2491 0.2332 6.8421 42 1 3.3726 1.0771 4.5140 43 1 1.7011 0.6459 4.9483 44 1 1.2813 1.5511 -3.5073 45 1 0.8462 1.5292 -1.7815 46 1 1.4519 5.0897 -2.5040 47 1 2.9636 -0.1272 -4.2993 48 1 3.0660 -1.6393 -3.3658 49 1 0.6320 -1.9964 -3.6772 50 1 0.5296 -0.4842 -4.6107 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000067230358.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:04:00 Heat of formation + Delta-G solvation = -94.626198 kcal Electronic energy + Delta-G solvation = -29774.894572 eV Core-core repulsion = 25800.170633 eV Total energy + Delta-G solvation = -3974.723939 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.62005 -40.63501 -38.52087 -37.95252 -36.85972 -36.02737 -34.69361 -33.12901 -32.19720 -31.58934 -30.70664 -29.05990 -26.29692 -25.27776 -24.84456 -23.58288 -23.16934 -21.32799 -20.64855 -20.12280 -19.01094 -18.45559 -18.31470 -17.72482 -17.19929 -16.61519 -16.32331 -16.20557 -15.97185 -15.79110 -15.52243 -15.06045 -14.97666 -14.90147 -14.52870 -14.40539 -14.23233 -13.90599 -13.64751 -13.57743 -13.44597 -13.36426 -13.20081 -13.11718 -13.01757 -12.90943 -12.74755 -12.58852 -12.44053 -12.19439 -12.13487 -12.00407 -11.79949 -11.64657 -11.51156 -11.31399 -10.97922 -10.83375 -10.62925 -10.52140 -10.10909 -9.56172 -8.20356 -6.30830 1.37545 1.42753 1.48605 1.53029 1.61973 1.73123 1.79959 2.02232 2.37653 2.49858 3.12321 3.16923 3.55582 3.65737 3.78666 3.83261 4.10471 4.14492 4.21260 4.28074 4.32603 4.34968 4.38278 4.48050 4.56035 4.59586 4.63367 4.71113 4.75714 4.84064 4.91206 4.95482 5.01367 5.03491 5.14003 5.16937 5.21411 5.28757 5.29149 5.32110 5.39310 5.43385 5.45891 5.59857 5.66156 5.81631 6.08618 6.45801 6.56324 6.58638 6.80830 7.17651 7.30748 7.40858 8.85070 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.009162 B = 0.003654 C = 0.002798 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3055.444632 B = 7661.594873 C =10004.193418 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.123 3.877 3 H 0.092 0.908 4 N -0.705 5.705 5 C 0.511 3.489 6 O -0.580 6.580 7 C -0.097 4.097 8 C -0.107 4.107 9 C -0.114 4.114 10 C -0.121 4.121 11 C -0.114 4.114 12 C -0.099 4.099 13 C 0.523 3.477 14 O -0.575 6.575 15 N -0.587 5.587 16 C 0.243 3.757 17 C -0.547 4.547 18 H 0.047 0.953 19 C 0.030 3.970 20 N -0.910 5.910 21 Si 0.939 3.061 22 H -0.275 1.275 23 H -0.275 1.275 24 H -0.286 1.286 25 C 0.119 3.881 26 C -0.030 4.030 27 C 0.245 3.755 28 N -0.491 5.491 29 H 0.077 0.923 30 H 0.078 0.922 31 H 0.060 0.940 32 H 0.414 0.586 33 H 0.110 0.890 34 H 0.061 0.939 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.078 0.922 38 H 0.077 0.923 39 H 0.058 0.942 40 H 0.070 0.930 41 H 0.069 0.931 42 H 0.049 0.951 43 H 0.054 0.946 44 H 0.044 0.956 45 H 0.042 0.958 46 H 0.267 0.733 47 H 0.084 0.916 48 H 0.084 0.916 49 H 0.127 0.873 50 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.174 -12.387 13.434 18.402 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.014 3.986 3 H 0.110 0.890 4 N -0.359 5.359 5 C 0.299 3.701 6 O -0.460 6.460 7 C -0.118 4.118 8 C -0.144 4.144 9 C -0.151 4.151 10 C -0.158 4.158 11 C -0.152 4.152 12 C -0.137 4.137 13 C 0.311 3.689 14 O -0.456 6.456 15 N -0.317 5.317 16 C 0.122 3.878 17 C -0.586 4.586 18 H 0.065 0.935 19 C -0.171 4.171 20 N -0.549 5.549 21 Si 0.766 3.234 22 H -0.200 1.200 23 H -0.200 1.200 24 H -0.212 1.212 25 C -0.005 4.005 26 C -0.071 4.071 27 C -0.072 4.072 28 N -0.169 5.169 29 H 0.096 0.904 30 H 0.097 0.903 31 H 0.079 0.921 32 H 0.252 0.748 33 H 0.128 0.872 34 H 0.079 0.921 35 H 0.096 0.904 36 H 0.091 0.909 37 H 0.097 0.903 38 H 0.095 0.905 39 H 0.077 0.923 40 H 0.089 0.911 41 H 0.087 0.913 42 H 0.067 0.933 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.060 0.940 46 H 0.076 0.924 47 H 0.103 0.897 48 H 0.102 0.898 49 H 0.145 0.855 50 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -1.806 -12.788 12.038 17.655 hybrid contribution 0.815 1.237 0.103 1.485 sum -0.992 -11.551 12.142 16.788 Atomic orbital electron populations 1.21987 0.91495 1.03315 1.03370 1.20706 0.96775 0.97621 0.83448 0.88992 1.45798 1.67010 1.14785 1.08284 1.21416 0.76613 0.86827 0.85267 1.90717 1.51567 1.18012 1.85663 1.21384 1.01991 0.97372 0.91077 1.21538 0.97887 0.95325 0.99686 1.21528 1.02249 0.97849 0.93481 1.21576 0.99626 0.96136 0.98458 1.21551 0.99645 0.97736 0.96259 1.21338 1.01528 0.96826 0.94044 1.20461 0.77405 0.85824 0.85183 1.90581 1.49752 1.19145 1.86132 1.48005 1.64872 1.12824 1.05977 1.19356 0.94962 0.74569 0.98901 1.21703 0.97101 0.91627 1.48161 0.93474 1.25430 0.97775 0.99088 0.94838 1.69947 1.24363 1.11715 1.48894 0.85791 0.80522 0.79230 0.77864 1.19990 1.20016 1.21200 1.21260 0.95698 0.97465 0.86116 1.19720 0.99604 1.00279 0.87534 1.29225 0.91964 0.92152 0.93862 1.81218 1.10140 1.12086 1.13433 0.90415 0.90286 0.92086 0.74806 0.87171 0.92070 0.90425 0.90874 0.90318 0.90480 0.92320 0.91091 0.91263 0.93264 0.92672 0.93783 0.94008 0.92429 0.89742 0.89783 0.85467 0.85051 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.22 9.25 71.98 0.67 -3.55 16 2 C 0.12 4.25 2.14 44.24 0.09 4.35 16 3 H 0.09 4.02 6.05 -2.39 -0.01 4.01 16 4 N -0.71 -21.14 4.93 -446.11 -2.20 -23.34 16 5 C 0.51 16.00 7.12 87.65 0.62 16.63 16 6 O -0.58 -23.76 15.65 -3.03 -0.05 -23.81 16 7 C -0.10 -2.14 2.53 -11.54 -0.03 -2.17 16 8 C -0.11 -1.77 5.10 30.60 0.16 -1.61 16 9 C -0.11 -1.40 5.92 30.59 0.18 -1.22 16 10 C -0.12 -1.55 5.92 30.60 0.18 -1.37 16 11 C -0.11 -1.79 5.93 30.61 0.18 -1.61 16 12 C -0.10 -2.24 4.49 30.61 0.14 -2.10 16 13 C 0.52 18.13 6.88 87.65 0.60 18.73 16 14 O -0.57 -20.36 15.38 -3.02 -0.05 -20.40 16 15 N -0.59 -20.12 2.47 -826.16 -2.04 -22.17 16 16 C 0.24 9.99 4.83 85.63 0.41 10.40 16 17 C -0.55 -26.95 8.63 25.60 0.22 -26.73 16 18 H 0.05 2.42 7.81 -2.91 -0.02 2.39 16 19 C 0.03 1.54 5.46 84.66 0.46 2.00 16 20 N -0.91 -48.27 13.29 21.45 0.28 -47.99 16 21 Si 0.94 42.31 29.54 68.60 2.03 44.33 16 22 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 23 H -0.27 -11.96 7.11 99.48 0.71 -11.25 16 24 H -0.29 -13.06 7.11 99.48 0.71 -12.35 16 25 C 0.12 3.37 5.44 86.38 0.47 3.84 16 26 C -0.03 -0.64 6.02 28.79 0.17 -0.47 16 27 C 0.25 6.21 15.43 89.44 1.38 7.59 16 28 N -0.49 -15.17 18.54 20.01 0.37 -14.80 16 29 H 0.08 2.31 6.34 -2.39 -0.02 2.30 16 30 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 31 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 32 H 0.41 10.72 7.14 -92.71 -0.66 10.05 16 33 H 0.11 2.12 8.14 -2.39 -0.02 2.10 16 34 H 0.06 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.08 1.16 7.56 -2.39 -0.02 1.14 16 36 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 37 H 0.08 0.80 8.14 -2.38 -0.02 0.78 16 38 H 0.08 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.06 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 41 H 0.07 1.02 8.14 -2.39 -0.02 1.00 16 42 H 0.05 1.29 8.10 -2.38 -0.02 1.28 16 43 H 0.05 1.39 8.10 -2.39 -0.02 1.37 16 44 H 0.04 1.82 8.03 -2.39 -0.02 1.80 16 45 H 0.04 1.80 4.95 -2.39 -0.01 1.79 16 46 H 0.27 13.60 8.31 -92.71 -0.77 12.83 16 47 H 0.08 2.46 8.11 -2.39 -0.02 2.44 16 48 H 0.08 2.44 7.20 -2.39 -0.02 2.42 16 49 H 0.13 2.31 8.14 -2.39 -0.02 2.29 16 50 H 0.13 2.45 8.14 -2.39 -0.02 2.43 16 Total: -1.00 -64.71 407.60 4.54 -60.17 By element: Atomic # 1 Polarization: 25.04 SS G_CDS: 0.28 Total: 25.32 kcal Atomic # 6 Polarization: 16.77 SS G_CDS: 5.92 Total: 22.69 kcal Atomic # 7 Polarization: -104.71 SS G_CDS: -3.59 Total: -108.30 kcal Atomic # 8 Polarization: -44.12 SS G_CDS: -0.09 Total: -44.21 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.33 kcal Total: -64.71 4.54 -60.17 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000067230358.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.459 kcal (2) G-P(sol) polarization free energy of solvation -64.709 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.167 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.167 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.626 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds