Wall clock time and date at job start Tue Mar 31 2020 18:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.35788 * 116.99784 * 179.97438 * 5 4 2 7 7 C 1.38881 * 119.60175 * 180.02562 * 6 5 4 8 8 C 1.38347 * 119.18453 * 179.97438 * 7 6 5 9 9 C 1.39380 * 118.42448 * 0.02562 * 8 7 6 10 10 N 1.39980 * 120.42789 * 179.97438 * 9 8 7 11 11 C 1.46503 * 119.99922 * 179.97438 * 10 9 8 12 12 H 1.08996 * 109.47130 * 324.99819 * 11 10 9 13 13 C 1.52995 * 109.47106 * 84.99757 * 11 10 9 14 14 C 1.50703 * 109.46765 * 204.99262 * 11 10 9 15 15 O 1.21278 * 119.99919 * 0.02562 * 14 11 10 16 16 N 1.34776 * 119.99810 * 179.97438 * 14 11 10 17 17 C 1.46497 * 119.99987 * 0.02562 * 16 14 11 18 18 C 1.46498 * 119.99958 * 180.02562 * 16 14 11 19 19 C 1.50697 * 109.47078 * 90.00771 * 18 16 14 20 20 H 1.08002 * 119.99904 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99821 * 180.02562 * 19 18 16 22 22 N 1.31507 * 120.00131 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46881 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47356 * 119.99741 * 23 21 19 26 26 H 1.48497 * 109.47393 * 240.00055 * 23 21 19 27 27 C 1.38671 * 119.14311 * 359.97438 * 9 8 7 28 28 N 1.31965 * 120.73301 * 359.75051 * 27 9 8 29 29 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 30 30 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 31 31 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 33 33 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 34 34 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 36 36 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 37 37 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 38 38 H 1.07994 * 120.40847 * 359.95838 * 7 6 5 39 39 H 1.08007 * 120.78274 * 180.02562 * 8 7 6 40 40 H 0.97002 * 120.00051 * 359.97438 * 10 9 8 41 41 H 1.09003 * 109.47072 * 179.97438 * 13 11 10 42 42 H 1.08996 * 109.47326 * 299.99752 * 13 11 10 43 43 H 1.09003 * 109.47726 * 59.99958 * 13 11 10 44 44 H 1.09009 * 109.47005 * 89.99560 * 17 16 14 45 45 H 1.09001 * 109.47353 * 209.99714 * 17 16 14 46 46 H 1.09000 * 109.47495 * 329.99807 * 17 16 14 47 47 H 1.09000 * 109.46871 * 210.00613 * 18 16 14 48 48 H 1.08998 * 109.47495 * 330.00160 * 18 16 14 49 49 H 0.97000 * 119.99971 * 180.02562 * 22 21 19 50 50 H 1.07998 * 119.63316 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0800 -1.4417 2.2326 7 6 5.4628 -1.5707 2.2329 8 6 6.0813 -2.2013 3.2976 9 6 5.2860 -2.6858 4.3347 10 7 5.8678 -3.3312 5.4321 11 6 5.0230 -3.8364 6.5172 12 1 4.1777 -3.1638 6.6627 13 6 4.5086 -5.2312 6.1559 14 6 5.8296 -3.9121 7.7880 15 8 6.9950 -3.5766 7.7874 16 7 5.2554 -4.3516 8.9254 17 6 3.8474 -4.7562 8.9261 18 6 6.0392 -4.4246 10.1609 19 6 5.9256 -3.1195 10.9057 20 1 5.3296 -2.3158 10.4991 21 6 6.5836 -2.9510 12.1056 22 7 7.3098 -3.9294 12.6003 23 14 6.4434 -1.3330 13.0285 24 1 5.5747 -0.4014 12.2652 25 1 5.8514 -1.5770 14.3683 26 1 7.7932 -0.7340 13.1854 27 6 3.9110 -2.5202 4.2652 28 7 3.3566 -1.9084 3.2358 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.7515 -0.1582 2.1370 37 1 1.6053 -1.7197 1.2953 38 1 6.0480 -1.1837 1.4119 39 1 7.1550 -2.3154 3.3246 40 1 6.8304 -3.4440 5.4742 41 1 3.8804 -5.6073 6.9635 42 1 3.9254 -5.1766 5.2368 43 1 5.3539 -5.9039 6.0103 44 1 3.7746 -5.8188 8.6940 45 1 3.4160 -4.5688 9.9094 46 1 3.3039 -4.1823 8.1755 47 1 5.6591 -5.2334 10.7850 48 1 7.0846 -4.6143 9.9173 49 1 7.7724 -3.8111 13.4447 50 1 3.2873 -2.8922 5.0646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116907487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:49 Heat of formation + Delta-G solvation = -37.253324 kcal Electronic energy + Delta-G solvation = -28554.852165 eV Core-core repulsion = 24582.616100 eV Total energy + Delta-G solvation = -3972.236065 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.69723 -39.57334 -38.38956 -36.07639 -35.14901 -34.99835 -32.92109 -32.43505 -30.96151 -28.43699 -27.58799 -27.47166 -26.61119 -26.19861 -24.33173 -23.65554 -22.68365 -21.61635 -20.51661 -18.91627 -18.46920 -17.70344 -16.78916 -16.53102 -16.30564 -15.86607 -15.65449 -15.22686 -14.84458 -14.65420 -14.56101 -14.42181 -14.02611 -13.72014 -13.47681 -13.43896 -13.12874 -12.94313 -12.80571 -12.61398 -12.48936 -12.33870 -12.21485 -12.11807 -11.83129 -11.51661 -11.42780 -11.38355 -11.18492 -10.99747 -10.93915 -10.89166 -10.65655 -10.31554 -10.22243 -9.69070 -9.65912 -9.45595 -9.04771 -8.50037 -7.78959 -7.28389 -6.10856 -4.15846 1.14067 1.45444 2.99219 3.20212 3.24492 3.26022 3.34175 3.38815 3.82282 3.90615 4.35389 4.39636 4.51396 4.55844 4.74981 4.78957 4.83111 4.92920 5.05878 5.11457 5.16879 5.23308 5.23992 5.25437 5.33405 5.43684 5.45167 5.53612 5.59271 5.62039 5.62856 5.67310 5.73479 5.77072 5.82877 5.94354 5.96546 6.00958 6.04389 6.20698 6.28456 6.88005 7.11655 7.31772 7.34644 7.41685 7.68450 7.84977 7.94323 8.14961 8.25524 8.77730 8.93225 9.49561 10.97253 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.002109 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.158829 B =13273.566443 C =13736.921747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.097 4.097 3 C -0.147 4.147 4 C 0.079 3.921 5 O -0.311 6.311 6 C 0.255 3.745 7 C -0.136 4.136 8 C -0.120 4.120 9 C 0.149 3.851 10 N -0.718 5.718 11 C 0.129 3.871 12 H 0.098 0.902 13 C -0.175 4.175 14 C 0.502 3.498 15 O -0.536 6.536 16 N -0.595 5.595 17 C 0.078 3.922 18 C 0.245 3.755 19 C -0.528 4.528 20 H 0.058 0.942 21 C 0.061 3.939 22 N -0.894 5.894 23 Si 0.898 3.102 24 H -0.273 1.273 25 H -0.283 1.283 26 H -0.282 1.282 27 C 0.055 3.945 28 N -0.499 5.499 29 H 0.058 0.942 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.078 0.922 33 H 0.054 0.946 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.062 0.938 37 H 0.061 0.939 38 H 0.138 0.862 39 H 0.140 0.860 40 H 0.411 0.589 41 H 0.083 0.917 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.051 0.949 45 H 0.076 0.924 46 H 0.059 0.941 47 H 0.035 0.965 48 H 0.044 0.956 49 H 0.263 0.737 50 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.898 2.054 -23.236 26.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.116 4.116 3 C -0.204 4.204 4 C 0.003 3.997 5 O -0.220 6.220 6 C 0.074 3.926 7 C -0.157 4.157 8 C -0.150 4.150 9 C 0.043 3.957 10 N -0.350 5.350 11 C 0.020 3.980 12 H 0.116 0.884 13 C -0.234 4.234 14 C 0.287 3.713 15 O -0.414 6.414 16 N -0.327 5.327 17 C -0.066 4.066 18 C 0.126 3.874 19 C -0.567 4.567 20 H 0.076 0.924 21 C -0.141 4.141 22 N -0.532 5.532 23 Si 0.726 3.274 24 H -0.198 1.198 25 H -0.209 1.209 26 H -0.208 1.208 27 C -0.106 4.106 28 N -0.221 5.221 29 H 0.077 0.923 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.096 0.904 33 H 0.073 0.927 34 H 0.081 0.919 35 H 0.073 0.927 36 H 0.081 0.919 37 H 0.080 0.920 38 H 0.156 0.844 39 H 0.158 0.842 40 H 0.249 0.751 41 H 0.101 0.899 42 H 0.084 0.916 43 H 0.083 0.917 44 H 0.070 0.930 45 H 0.095 0.905 46 H 0.078 0.922 47 H 0.053 0.947 48 H 0.062 0.938 49 H 0.073 0.927 50 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -12.099 2.340 -23.162 26.236 hybrid contribution 0.972 0.674 0.930 1.504 sum -11.127 3.014 -22.232 25.043 Atomic orbital electron populations 1.21765 0.93923 1.02191 1.02349 1.21166 0.95825 0.96906 0.97675 1.21820 1.01863 0.95108 1.01594 1.22603 0.78265 1.00546 0.98282 1.86165 1.22452 1.73497 1.39842 1.19468 0.89250 0.95942 0.87907 1.20783 0.91933 1.02785 1.00247 1.20888 1.00227 1.00820 0.93078 1.18700 0.93486 0.94598 0.88938 1.44379 1.09496 1.62747 1.18365 1.20778 0.93840 0.96720 0.86702 0.88438 1.22479 1.02297 0.95707 1.02904 1.20209 0.87875 0.78573 0.84611 1.90668 1.17024 1.48562 1.85124 1.48092 1.11283 1.62684 1.10620 1.21865 0.82894 0.98677 1.03193 1.19341 0.92016 0.97306 0.78733 1.21444 1.30532 0.99586 1.05090 0.92398 1.24940 0.94904 0.96953 0.97321 1.69934 1.31378 1.31860 1.20075 0.86434 0.78003 0.83513 0.79433 1.19793 1.20894 1.20845 1.21886 0.90866 1.01184 0.96664 1.67115 1.40366 1.12496 1.02088 0.92289 0.91927 0.92353 0.90375 0.92712 0.91925 0.92687 0.91922 0.92037 0.84371 0.84206 0.75124 0.89861 0.91646 0.91747 0.93028 0.90495 0.92221 0.94739 0.93760 0.92702 0.82785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.88 9.19 37.16 0.34 -0.54 16 2 C -0.10 -0.75 3.16 -90.62 -0.29 -1.03 16 3 C -0.15 -1.10 9.09 37.16 0.34 -0.76 16 4 C 0.08 0.78 4.69 37.16 0.17 0.96 16 5 O -0.31 -3.73 9.65 -19.08 -0.18 -3.92 16 6 C 0.26 3.29 7.49 -17.16 -0.13 3.16 16 7 C -0.14 -1.56 10.03 -39.30 -0.39 -1.95 16 8 C -0.12 -1.38 10.04 -39.12 -0.39 -1.77 16 9 C 0.15 1.90 6.66 -83.55 -0.56 1.34 16 10 N -0.72 -9.82 5.14 -53.14 -0.27 -10.09 16 11 C 0.13 1.80 1.88 -69.08 -0.13 1.67 16 12 H 0.10 1.25 5.77 -51.93 -0.30 0.95 16 13 C -0.18 -1.95 9.08 37.16 0.34 -1.61 16 14 C 0.50 9.75 7.14 -10.98 -0.08 9.67 16 15 O -0.54 -12.71 15.42 5.56 0.09 -12.62 16 16 N -0.60 -11.81 2.86 -182.96 -0.52 -12.33 16 17 C 0.08 1.11 8.80 59.85 0.53 1.63 16 18 C 0.24 6.18 5.16 -5.20 -0.03 6.15 16 19 C -0.53 -14.65 9.39 -34.44 -0.32 -14.97 16 20 H 0.06 1.62 7.81 -52.49 -0.41 1.21 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.62 16 22 N -0.89 -26.13 13.29 55.43 0.74 -25.39 16 23 Si 0.90 21.66 29.54 -169.99 -5.02 16.64 16 24 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 25 H -0.28 -6.64 7.11 56.52 0.40 -6.23 16 26 H -0.28 -6.83 7.11 56.52 0.40 -6.43 16 27 C 0.05 0.70 10.05 -17.33 -0.17 0.52 16 28 N -0.50 -6.67 9.20 -13.17 -0.12 -6.79 16 29 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 32 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 33 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.53 7.82 -51.93 -0.41 0.12 16 35 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.06 0.66 8.10 -51.93 -0.42 0.24 16 37 H 0.06 0.62 8.11 -51.93 -0.42 0.20 16 38 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 39 H 0.14 1.34 8.06 -52.48 -0.42 0.91 16 40 H 0.41 5.92 7.82 -40.82 -0.32 5.60 16 41 H 0.08 0.83 4.53 -51.93 -0.24 0.60 16 42 H 0.06 0.64 7.75 -51.93 -0.40 0.24 16 43 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 44 H 0.05 0.61 6.95 -51.92 -0.36 0.25 16 45 H 0.08 1.15 8.07 -51.93 -0.42 0.73 16 46 H 0.06 0.68 6.01 -51.93 -0.31 0.37 16 47 H 0.03 0.88 8.07 -51.93 -0.42 0.46 16 48 H 0.04 1.26 7.42 -51.93 -0.39 0.88 16 49 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 50 H 0.16 1.72 6.15 -52.49 -0.32 1.40 16 LS Contribution 405.52 15.07 6.11 6.11 Total: -1.00 -32.85 405.52 -8.13 -40.99 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: -8.07 Total: 3.31 kcal Atomic # 6 Polarization: 4.96 SS G_CDS: -0.87 Total: 4.09 kcal Atomic # 7 Polarization: -54.42 SS G_CDS: -0.18 Total: -54.61 kcal Atomic # 8 Polarization: -16.44 SS G_CDS: -0.10 Total: -16.54 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.85 -8.13 -40.99 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116907487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.733 kcal (2) G-P(sol) polarization free energy of solvation -32.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.120 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.133 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -37.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds