Wall clock time and date at job start Tue Mar 31 2020 18:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 O 1.42903 * 109.46726 * 174.99924 * 4 2 1 6 6 C 1.35788 * 116.99784 * 179.97438 * 5 4 2 7 7 C 1.38881 * 119.60175 * 180.02562 * 6 5 4 8 8 C 1.38347 * 119.18453 * 179.97438 * 7 6 5 9 9 C 1.39380 * 118.42448 * 0.02562 * 8 7 6 10 10 N 1.39980 * 120.42789 * 179.97438 * 9 8 7 11 11 C 1.46503 * 119.99922 * 179.97438 * 10 9 8 12 12 H 1.08996 * 109.47130 * 324.99819 * 11 10 9 13 13 C 1.52995 * 109.47106 * 84.99757 * 11 10 9 14 14 C 1.50703 * 109.46765 * 204.99262 * 11 10 9 15 15 O 1.21278 * 119.99919 * 0.02562 * 14 11 10 16 16 N 1.34776 * 119.99810 * 179.97438 * 14 11 10 17 17 C 1.46497 * 119.99987 * 0.02562 * 16 14 11 18 18 C 1.46498 * 119.99958 * 180.02562 * 16 14 11 19 19 C 1.50697 * 109.47078 * 90.00771 * 18 16 14 20 20 H 1.08002 * 119.99904 * 359.97438 * 19 18 16 21 21 C 1.37879 * 119.99821 * 180.02562 * 19 18 16 22 22 N 1.31507 * 120.00131 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99950 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46881 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47356 * 119.99741 * 23 21 19 26 26 H 1.48497 * 109.47393 * 240.00055 * 23 21 19 27 27 C 1.38671 * 119.14311 * 359.97438 * 9 8 7 28 28 N 1.31965 * 120.73301 * 359.75051 * 27 9 8 29 29 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 30 30 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 31 31 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 32 32 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 33 33 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 34 34 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 36 36 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 37 37 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 38 38 H 1.07994 * 120.40847 * 359.95838 * 7 6 5 39 39 H 1.08007 * 120.78274 * 180.02562 * 8 7 6 40 40 H 0.97002 * 120.00051 * 359.97438 * 10 9 8 41 41 H 1.09003 * 109.47072 * 179.97438 * 13 11 10 42 42 H 1.08996 * 109.47326 * 299.99752 * 13 11 10 43 43 H 1.09003 * 109.47726 * 59.99958 * 13 11 10 44 44 H 1.09009 * 109.47005 * 89.99560 * 17 16 14 45 45 H 1.09001 * 109.47353 * 209.99714 * 17 16 14 46 46 H 1.09000 * 109.47495 * 329.99807 * 17 16 14 47 47 H 1.09000 * 109.46871 * 210.00613 * 18 16 14 48 48 H 1.08998 * 109.47495 * 330.00160 * 18 16 14 49 49 H 0.97000 * 119.99971 * 180.02562 * 22 21 19 50 50 H 1.07998 * 119.63316 * 180.02562 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 8 3.4641 -0.8237 1.1921 6 6 4.0800 -1.4417 2.2326 7 6 5.4628 -1.5707 2.2329 8 6 6.0813 -2.2013 3.2976 9 6 5.2860 -2.6858 4.3347 10 7 5.8678 -3.3312 5.4321 11 6 5.0230 -3.8364 6.5172 12 1 4.1777 -3.1638 6.6627 13 6 4.5086 -5.2312 6.1559 14 6 5.8296 -3.9121 7.7880 15 8 6.9950 -3.5766 7.7874 16 7 5.2554 -4.3516 8.9254 17 6 3.8474 -4.7562 8.9261 18 6 6.0392 -4.4246 10.1609 19 6 5.9256 -3.1195 10.9057 20 1 5.3296 -2.3158 10.4991 21 6 6.5836 -2.9510 12.1056 22 7 7.3098 -3.9294 12.6003 23 14 6.4434 -1.3330 13.0285 24 1 5.5747 -0.4014 12.2652 25 1 5.8514 -1.5770 14.3683 26 1 7.7932 -0.7340 13.1854 27 6 3.9110 -2.5202 4.2652 28 7 3.3566 -1.9084 3.2358 29 1 -0.3634 0.5139 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.8934 -0.5139 -0.8898 33 1 1.6767 1.9564 0.8899 34 1 3.1301 1.4425 0.0005 35 1 1.6767 1.9563 -0.8901 36 1 1.7515 -0.1582 2.1370 37 1 1.6053 -1.7197 1.2953 38 1 6.0480 -1.1837 1.4119 39 1 7.1550 -2.3154 3.3246 40 1 6.8304 -3.4440 5.4742 41 1 3.8804 -5.6073 6.9635 42 1 3.9254 -5.1766 5.2368 43 1 5.3539 -5.9039 6.0103 44 1 3.7746 -5.8188 8.6940 45 1 3.4160 -4.5688 9.9094 46 1 3.3039 -4.1823 8.1755 47 1 5.6591 -5.2334 10.7850 48 1 7.0846 -4.6143 9.9173 49 1 7.7724 -3.8111 13.4447 50 1 3.2873 -2.8922 5.0646 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116907487.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:56:48 Heat of formation + Delta-G solvation = -59.477204 kcal Electronic energy + Delta-G solvation = -28555.815864 eV Core-core repulsion = 24582.616100 eV Total energy + Delta-G solvation = -3973.199765 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.67916 -40.94046 -39.33629 -37.10119 -36.66914 -35.90473 -34.80883 -33.54222 -32.07350 -29.77518 -28.99285 -28.02591 -27.63180 -27.33411 -25.77383 -24.83165 -23.88516 -22.82506 -21.18695 -20.26879 -19.36046 -18.92943 -18.65214 -17.83995 -17.23932 -17.01996 -17.00044 -16.52767 -16.42019 -15.69099 -15.59148 -15.30044 -15.10636 -14.95679 -14.42866 -14.40293 -14.20063 -14.12314 -13.94265 -13.62803 -13.52049 -13.48894 -13.36674 -13.17594 -13.01225 -12.93304 -12.79746 -12.59294 -12.33635 -12.29207 -12.18894 -12.00432 -11.70812 -11.68899 -11.58526 -11.25466 -10.66682 -10.64580 -10.58617 -10.35381 -9.46599 -8.27556 -8.24681 -6.38940 0.22911 0.49264 1.34942 1.37281 1.48568 1.71552 1.98003 2.21034 2.36414 2.60124 2.88396 3.05313 3.45059 3.51811 3.86028 3.88209 3.93415 3.97413 4.06933 4.12773 4.13420 4.29694 4.39219 4.54555 4.60251 4.63125 4.70233 4.74501 4.77489 4.78438 4.81079 4.90131 4.96932 4.99474 5.00311 5.03122 5.07920 5.20584 5.21030 5.27163 5.33947 5.41087 5.45065 5.52853 5.78972 6.03458 6.09648 6.38994 6.60264 6.68244 6.74992 6.98418 7.23726 7.38716 8.82360 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.016198 B = 0.002109 C = 0.002038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1728.158829 B =13273.566443 C =13736.921747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.094 4.094 3 C -0.145 4.145 4 C 0.078 3.922 5 O -0.318 6.318 6 C 0.241 3.759 7 C -0.137 4.137 8 C -0.119 4.119 9 C 0.139 3.861 10 N -0.724 5.724 11 C 0.144 3.856 12 H 0.116 0.884 13 C -0.167 4.167 14 C 0.493 3.507 15 O -0.590 6.590 16 N -0.601 5.601 17 C 0.069 3.931 18 C 0.259 3.741 19 C -0.541 4.541 20 H 0.052 0.948 21 C 0.008 3.992 22 N -0.926 5.926 23 Si 0.965 3.035 24 H -0.268 1.268 25 H -0.268 1.268 26 H -0.283 1.283 27 C 0.049 3.951 28 N -0.512 5.512 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.061 0.939 32 H 0.080 0.920 33 H 0.051 0.949 34 H 0.049 0.951 35 H 0.069 0.931 36 H 0.053 0.947 37 H 0.058 0.942 38 H 0.159 0.841 39 H 0.157 0.843 40 H 0.405 0.595 41 H 0.098 0.902 42 H 0.086 0.914 43 H 0.054 0.946 44 H 0.082 0.918 45 H 0.068 0.932 46 H 0.096 0.904 47 H 0.028 0.972 48 H 0.000 1.000 49 H 0.267 0.733 50 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.945 2.747 -24.587 28.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.112 4.112 3 C -0.202 4.202 4 C 0.003 3.997 5 O -0.226 6.226 6 C 0.061 3.939 7 C -0.157 4.157 8 C -0.149 4.149 9 C 0.034 3.966 10 N -0.356 5.356 11 C 0.035 3.965 12 H 0.133 0.867 13 C -0.225 4.225 14 C 0.280 3.720 15 O -0.471 6.471 16 N -0.332 5.332 17 C -0.072 4.072 18 C 0.137 3.863 19 C -0.580 4.580 20 H 0.070 0.930 21 C -0.191 4.191 22 N -0.566 5.566 23 Si 0.790 3.210 24 H -0.193 1.193 25 H -0.193 1.193 26 H -0.209 1.209 27 C -0.112 4.112 28 N -0.234 5.234 29 H 0.077 0.923 30 H 0.094 0.906 31 H 0.080 0.920 32 H 0.098 0.902 33 H 0.070 0.930 34 H 0.068 0.932 35 H 0.088 0.912 36 H 0.072 0.928 37 H 0.077 0.923 38 H 0.177 0.823 39 H 0.174 0.826 40 H 0.242 0.758 41 H 0.117 0.883 42 H 0.105 0.895 43 H 0.073 0.927 44 H 0.100 0.900 45 H 0.087 0.913 46 H 0.114 0.886 47 H 0.046 0.954 48 H 0.018 0.982 49 H 0.076 0.924 50 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -14.211 3.022 -24.541 28.519 hybrid contribution 1.614 0.451 1.289 2.114 sum -12.597 3.472 -23.252 26.672 Atomic orbital electron populations 1.21756 0.92538 1.02642 1.02985 1.21186 0.96877 0.96639 0.96507 1.21808 1.01038 0.95171 1.02225 1.22728 0.77357 1.00529 0.99128 1.86168 1.23471 1.73343 1.39629 1.19796 0.89985 0.96074 0.88084 1.21037 0.91662 1.02303 1.00743 1.21151 1.01134 0.99973 0.92615 1.18800 0.93792 0.95053 0.88983 1.44372 1.09204 1.63430 1.18591 1.20733 0.92952 0.98976 0.83842 0.86673 1.22450 1.02267 0.93364 1.04417 1.21225 0.87714 0.77023 0.85998 1.90633 1.19643 1.50711 1.86149 1.48068 1.13180 1.62826 1.09137 1.22221 0.79712 1.01165 1.04138 1.18792 0.90534 0.96159 0.80774 1.21717 1.30442 1.00305 1.05549 0.92954 1.25829 0.94499 1.00463 0.98342 1.70043 1.32113 1.33834 1.20621 0.85400 0.77899 0.79153 0.78548 1.19276 1.19349 1.20894 1.22120 0.91033 1.01115 0.96906 1.67129 1.40788 1.13041 1.02486 0.92341 0.90600 0.92026 0.90188 0.92967 0.93181 0.91179 0.92829 0.92345 0.82318 0.82554 0.75787 0.88315 0.89518 0.92724 0.90013 0.91309 0.88601 0.95387 0.98233 0.92400 0.81356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.47 9.19 71.98 0.66 -0.81 16 2 C -0.09 -1.31 3.16 -10.79 -0.03 -1.34 16 3 C -0.15 -2.00 9.09 71.98 0.65 -1.35 16 4 C 0.08 1.49 4.69 71.98 0.34 1.83 16 5 O -0.32 -7.33 9.65 -91.18 -0.88 -8.21 16 6 C 0.24 5.95 7.49 84.79 0.63 6.58 16 7 C -0.14 -2.91 10.03 22.45 0.23 -2.68 16 8 C -0.12 -2.56 10.04 22.57 0.23 -2.33 16 9 C 0.14 3.34 6.66 38.22 0.25 3.60 16 10 N -0.72 -19.10 5.14 -322.05 -1.66 -20.76 16 11 C 0.14 3.78 1.88 44.24 0.08 3.86 16 12 H 0.12 2.63 5.77 -2.39 -0.01 2.62 16 13 C -0.17 -3.26 9.08 71.98 0.65 -2.60 16 14 C 0.49 19.19 7.14 87.66 0.63 19.81 16 15 O -0.59 -29.02 15.42 -3.02 -0.05 -29.07 16 16 N -0.60 -23.87 2.86 -851.14 -2.43 -26.30 16 17 C 0.07 1.83 8.80 127.77 1.12 2.96 16 18 C 0.26 13.51 5.16 85.63 0.44 13.95 16 19 C -0.54 -30.65 9.39 25.60 0.24 -30.41 16 20 H 0.05 2.95 7.81 -2.91 -0.02 2.93 16 21 C 0.01 0.45 5.46 84.66 0.46 0.91 16 22 N -0.93 -55.30 13.29 21.45 0.28 -55.01 16 23 Si 0.97 44.63 29.54 68.60 2.03 46.66 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 25 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 26 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 27 C 0.05 1.15 10.05 84.78 0.85 2.00 16 28 N -0.51 -13.02 9.20 -308.41 -2.84 -15.85 16 29 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 30 H 0.08 0.60 8.14 -2.38 -0.02 0.58 16 31 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 32 H 0.08 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 34 H 0.05 0.81 7.82 -2.39 -0.02 0.79 16 35 H 0.07 0.74 8.14 -2.38 -0.02 0.73 16 36 H 0.05 1.11 8.10 -2.39 -0.02 1.09 16 37 H 0.06 1.13 8.11 -2.39 -0.02 1.11 16 38 H 0.16 2.62 8.06 -2.91 -0.02 2.60 16 39 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 40 H 0.41 11.70 7.82 -92.71 -0.72 10.97 16 41 H 0.10 1.61 4.53 -2.39 -0.01 1.60 16 42 H 0.09 1.39 7.75 -2.39 -0.02 1.37 16 43 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 44 H 0.08 1.69 6.95 -2.38 -0.02 1.68 16 45 H 0.07 1.95 8.07 -2.39 -0.02 1.93 16 46 H 0.10 1.84 6.01 -2.39 -0.01 1.83 16 47 H 0.03 1.48 8.07 -2.39 -0.02 1.46 16 48 H 0.00 -0.03 7.42 -2.39 -0.02 -0.05 16 49 H 0.27 14.93 8.31 -92.71 -0.77 14.16 16 50 H 0.17 3.31 6.15 -2.91 -0.02 3.29 16 Total: -1.00 -73.85 405.52 2.12 -71.73 By element: Atomic # 1 Polarization: 22.63 SS G_CDS: 0.21 Total: 22.85 kcal Atomic # 6 Polarization: 6.52 SS G_CDS: 7.44 Total: 13.97 kcal Atomic # 7 Polarization: -111.28 SS G_CDS: -6.64 Total: -117.92 kcal Atomic # 8 Polarization: -36.35 SS G_CDS: -0.93 Total: -37.28 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Total: -73.85 2.12 -71.73 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116907487.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.253 kcal (2) G-P(sol) polarization free energy of solvation -73.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.596 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.118 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.731 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.477 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds