Wall clock time and date at job start Tue Mar 31 2020 19:50:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46491 * 109.47285 * 2 1 4 4 C 1.37099 * 120.00092 * 263.54969 * 3 2 1 5 5 H 1.08004 * 119.99663 * 138.03948 * 4 3 2 6 6 C 1.38948 * 120.00252 * 318.04812 * 4 3 2 7 7 N 1.31404 * 120.00102 * 167.89941 * 6 4 3 8 8 Si 1.86800 * 119.99504 * 347.89761 * 6 4 3 9 9 H 1.48505 * 109.47264 * 87.31135 * 8 6 4 10 10 H 1.48502 * 109.46805 * 207.30825 * 8 6 4 11 11 H 1.48499 * 109.47434 * 327.30929 * 8 6 4 12 12 C 1.34782 * 120.00131 * 83.55155 * 3 2 1 13 13 O 1.21299 * 119.99927 * 184.94157 * 12 3 2 14 14 C 1.50700 * 119.99882 * 4.94954 * 12 3 2 15 15 C 1.53004 * 109.46820 * 204.37151 * 14 12 3 16 16 C 1.52998 * 109.46967 * 180.02562 * 15 14 12 17 17 C 1.52999 * 109.47430 * 59.99903 * 16 15 14 18 18 C 1.50698 * 109.47259 * 59.99737 * 17 16 15 19 19 O 1.21285 * 120.00062 * 342.31693 * 18 17 16 20 20 N 1.34773 * 120.00483 * 162.30942 * 18 17 16 21 21 C 1.46498 * 120.00698 * 185.41760 * 20 18 17 22 22 C 1.52999 * 109.46916 * 265.36007 * 21 20 18 23 23 C 1.46507 * 119.99641 * 5.13714 * 20 18 17 24 24 C 1.47193 * 109.47350 * 270.91186 * 23 20 18 25 25 N 9.33184 * 102.75080 * 89.32738 * 2 1 3 26 26 C 1.53004 * 109.47125 * 300.00001 * 17 16 15 27 27 C 1.52995 * 109.47303 * 84.37424 * 14 12 3 28 28 H 1.08999 * 109.47277 * 300.00210 * 1 2 3 29 29 H 1.08998 * 109.46889 * 60.00389 * 1 2 3 30 30 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 31 31 H 1.09002 * 109.47144 * 239.99282 * 2 1 3 32 32 H 1.09003 * 109.46720 * 120.00054 * 2 1 3 33 33 H 0.97003 * 119.99843 * 179.97438 * 7 6 4 34 34 H 1.08998 * 109.47044 * 324.36528 * 14 12 3 35 35 H 1.08998 * 109.47065 * 59.99709 * 15 14 12 36 36 H 1.09006 * 109.46974 * 299.99859 * 15 14 12 37 37 H 1.09006 * 109.47135 * 299.99732 * 16 15 14 38 38 H 1.09003 * 109.47258 * 179.97438 * 16 15 14 39 39 H 1.08997 * 109.47411 * 180.02562 * 17 16 15 40 40 H 1.09007 * 109.46463 * 25.35517 * 21 20 18 41 41 H 1.08995 * 109.47509 * 145.35838 * 21 20 18 42 42 H 1.09001 * 109.46895 * 179.97438 * 22 21 20 43 43 H 1.09003 * 109.47102 * 299.99596 * 22 21 20 44 44 H 1.09000 * 109.47613 * 59.99544 * 22 21 20 45 45 H 1.09005 * 109.46937 * 30.91210 * 23 20 18 46 46 H 1.09003 * 109.47207 * 150.91385 * 23 20 18 47 47 H 1.08997 * 109.47240 * 179.97438 * 26 17 16 48 48 H 1.08996 * 109.47299 * 300.00374 * 26 17 16 49 49 H 1.09003 * 109.46785 * 299.99891 * 27 14 12 50 50 H 1.08998 * 109.47802 * 59.99568 * 27 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3811 0.0000 4 6 2.3727 1.9830 -1.1798 5 1 2.0903 3.0081 -1.3691 6 6 3.0948 1.2741 -2.1319 7 7 3.2306 1.7562 -3.3468 8 14 3.8727 -0.3644 -1.6849 9 1 2.8874 -1.4548 -1.8985 10 1 5.0627 -0.5976 -2.5421 11 1 4.2863 -0.3434 -0.2588 12 6 2.1195 2.0602 1.1598 13 8 2.4377 3.2307 1.1516 14 6 1.8372 1.3652 2.4669 15 6 1.4244 2.3999 3.5158 16 6 1.1385 1.6944 4.8430 17 6 2.3979 0.9647 5.3145 18 6 3.5136 1.9598 5.5047 19 8 3.4400 3.0581 4.9953 20 7 4.5931 1.6295 6.2408 21 6 5.6213 2.6336 6.5249 22 6 6.7403 2.5253 5.4872 23 6 4.7353 0.2677 6.7621 24 6 4.0901 0.1777 8.0820 25 7 3.5897 0.1068 9.1011 26 6 2.8107 -0.0699 4.2656 27 6 3.0963 0.6352 2.9387 28 1 -0.3634 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0276 0.0005 31 1 1.8934 -0.5140 -0.8899 32 1 1.8933 -0.5139 0.8900 33 1 3.7351 1.2615 -4.0113 34 1 1.0301 0.6458 2.3290 35 1 0.5275 2.9200 3.1797 36 1 2.2316 3.1194 3.6537 37 1 0.3316 0.9746 4.7054 38 1 0.8449 2.4315 5.5904 39 1 2.1941 0.4618 6.2598 40 1 5.1791 3.6290 6.4800 41 1 6.0310 2.4626 7.5203 42 1 7.5051 3.2728 5.6983 43 1 7.1824 1.5300 5.5321 44 1 6.3306 2.6964 4.4917 45 1 4.2609 -0.4350 6.0771 46 1 5.7934 0.0239 6.8576 47 1 3.7082 -0.5894 4.6012 48 1 2.0038 -0.7896 4.1279 49 1 3.3904 -0.1018 2.1914 50 1 3.9034 1.3546 3.0766 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000124180943.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:50:57 Heat of formation + Delta-G solvation = -29.154277 kcal Electronic energy + Delta-G solvation = -31168.556382 eV Core-core repulsion = 27196.671519 eV Total energy + Delta-G solvation = -3971.884864 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.08750 -39.13857 -37.48386 -36.74167 -35.68543 -35.10299 -32.46527 -32.00715 -30.74053 -30.46069 -29.65512 -28.22025 -25.56751 -24.27808 -23.04517 -22.63142 -22.39403 -20.87302 -19.72973 -18.64169 -17.91462 -17.21180 -16.85024 -16.61306 -15.99464 -15.77039 -15.43292 -14.86687 -14.52570 -14.45015 -14.20840 -14.02644 -13.74746 -13.45673 -13.42354 -13.21172 -13.07494 -12.79114 -12.67666 -12.63636 -12.37945 -12.29055 -12.21683 -12.05023 -11.99530 -11.78096 -11.64974 -11.47910 -11.25287 -11.12844 -10.92500 -10.70763 -10.57110 -10.35185 -10.01321 -9.95134 -9.78164 -9.32218 -9.11177 -8.97558 -8.30380 -7.61717 -6.27864 -3.94181 1.93877 2.28547 2.41616 2.91998 3.02705 3.20396 3.24020 3.51416 3.80940 4.15574 4.19027 4.43140 4.46661 4.60563 4.67409 4.72313 4.79589 4.97339 5.04423 5.09575 5.18297 5.31966 5.33177 5.39203 5.47994 5.51603 5.58036 5.59654 5.68350 5.71830 5.82719 5.88489 5.92774 5.97860 6.03460 6.04194 6.13023 6.18270 6.22604 6.37082 6.43339 6.44118 6.62501 6.76704 6.85668 7.05342 7.17137 7.68257 8.05335 8.40312 8.63361 9.06689 9.40664 9.89689 10.84765 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.015616 B = 0.003649 C = 0.003487 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.566985 B = 7670.733232 C = 8027.179947 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.080 3.920 3 N -0.475 5.475 4 C -0.308 4.308 5 H 0.102 0.898 6 C 0.055 3.945 7 N -0.878 5.878 8 Si 0.886 3.114 9 H -0.274 1.274 10 H -0.291 1.291 11 H -0.265 1.265 12 C 0.479 3.521 13 O -0.555 6.555 14 C -0.103 4.103 15 C -0.123 4.123 16 C -0.097 4.097 17 C -0.110 4.110 18 C 0.522 3.478 19 O -0.495 6.495 20 N -0.616 5.616 21 C 0.109 3.891 22 C -0.170 4.170 23 C 0.197 3.803 24 C 0.183 3.817 25 N -0.416 5.416 26 C -0.111 4.111 27 C -0.111 4.111 28 H 0.052 0.948 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.074 0.926 32 H 0.060 0.940 33 H 0.272 0.728 34 H 0.078 0.922 35 H 0.057 0.943 36 H 0.118 0.882 37 H 0.068 0.932 38 H 0.064 0.936 39 H 0.087 0.913 40 H 0.090 0.910 41 H 0.073 0.927 42 H 0.067 0.933 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.131 0.869 46 H 0.127 0.873 47 H 0.070 0.930 48 H 0.081 0.919 49 H 0.069 0.931 50 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.982 -9.405 19.761 22.088 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C -0.043 4.043 3 N -0.198 5.198 4 C -0.436 4.436 5 H 0.120 0.880 6 C -0.149 4.149 7 N -0.515 5.515 8 Si 0.715 3.285 9 H -0.202 1.202 10 H -0.218 1.218 11 H -0.189 1.189 12 C 0.267 3.733 13 O -0.435 6.435 14 C -0.125 4.125 15 C -0.160 4.160 16 C -0.135 4.135 17 C -0.132 4.132 18 C 0.311 3.689 19 O -0.367 6.367 20 N -0.352 5.352 21 C -0.013 4.013 22 C -0.228 4.228 23 C 0.070 3.930 24 C -0.137 4.137 25 N -0.093 5.093 26 C -0.148 4.148 27 C -0.149 4.149 28 H 0.071 0.929 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.092 0.908 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.097 0.903 35 H 0.076 0.924 36 H 0.136 0.864 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.105 0.895 40 H 0.108 0.892 41 H 0.092 0.908 42 H 0.085 0.915 43 H 0.075 0.925 44 H 0.086 0.914 45 H 0.148 0.852 46 H 0.145 0.855 47 H 0.088 0.912 48 H 0.100 0.900 49 H 0.088 0.912 50 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 2.441 -8.273 20.750 22.471 hybrid contribution 0.624 -1.151 -0.327 1.349 sum 3.065 -9.423 20.422 22.699 Atomic orbital electron populations 1.22154 0.96510 1.00825 1.02631 1.21907 0.94603 0.86391 1.01422 1.43758 1.58408 1.11310 1.06330 1.19060 1.33162 1.00224 0.91141 0.88050 1.25422 0.95895 0.98432 0.95153 1.69672 1.39973 1.39446 1.02439 0.86901 0.78835 0.83546 0.79225 1.20176 1.21825 1.18929 1.20268 0.80768 0.87815 0.84434 1.90566 1.49679 1.16409 1.86827 1.21293 0.98115 0.98305 0.94757 1.21832 1.04115 0.98568 0.91526 1.21387 0.94471 0.99045 0.98555 1.21448 0.95080 0.96342 1.00306 1.20878 0.82200 0.88862 0.76990 1.90669 1.77955 1.23278 1.44803 1.48073 1.23251 1.10548 1.53332 1.21533 0.88458 0.93047 0.98287 1.22146 0.98126 1.01974 1.00546 1.19251 1.02130 0.86529 0.85104 1.30057 0.94172 0.94117 0.95402 1.81295 1.09018 1.06809 1.12216 1.21669 1.01804 0.96703 0.94644 1.21488 0.98073 0.99529 0.95843 0.92928 0.91594 0.92824 0.90812 0.92174 0.91776 0.90339 0.92395 0.86445 0.91380 0.91766 0.89509 0.89190 0.90816 0.91454 0.92464 0.91430 0.85209 0.85496 0.91202 0.90017 0.91209 0.91098 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.71 9.98 37.16 0.37 -2.34 16 2 C 0.08 1.57 4.21 -4.04 -0.02 1.56 16 3 N -0.48 -11.50 2.17 -114.81 -0.25 -11.75 16 4 C -0.31 -8.86 9.38 -14.93 -0.14 -9.00 16 5 H 0.10 3.31 7.96 -52.48 -0.42 2.90 16 6 C 0.06 1.54 5.40 -17.47 -0.09 1.45 16 7 N -0.88 -25.93 13.96 55.50 0.77 -25.15 16 8 Si 0.89 20.52 24.86 -169.99 -4.23 16.30 16 9 H -0.27 -5.85 6.46 56.52 0.37 -5.49 16 10 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.26 -5.90 7.11 56.52 0.40 -5.49 16 12 C 0.48 11.27 6.69 -10.98 -0.07 11.20 16 13 O -0.55 -15.56 15.99 5.54 0.09 -15.47 16 14 C -0.10 -1.76 1.69 -91.77 -0.15 -1.92 16 15 C -0.12 -2.04 4.43 -26.73 -0.12 -2.15 16 16 C -0.10 -1.16 5.25 -26.73 -0.14 -1.30 16 17 C -0.11 -1.10 2.19 -91.77 -0.20 -1.31 16 18 C 0.52 6.17 5.60 -10.99 -0.06 6.10 16 19 O -0.49 -8.03 12.59 5.55 0.07 -7.96 16 20 N -0.62 -5.18 2.43 -177.02 -0.43 -5.61 16 21 C 0.11 0.86 6.14 -4.04 -0.02 0.84 16 22 C -0.17 -1.34 10.24 37.16 0.38 -0.96 16 23 C 0.20 0.95 5.56 -6.83 -0.04 0.91 16 24 C 0.18 1.38 14.94 -20.71 -0.31 1.07 16 25 N -0.42 -4.45 18.55 42.21 0.78 -3.66 16 26 C -0.11 -1.03 5.18 -26.75 -0.14 -1.17 16 27 C -0.11 -1.62 4.78 -26.76 -0.13 -1.75 16 28 H 0.05 0.81 6.96 -51.93 -0.36 0.45 16 29 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 30 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.07 1.55 3.24 -51.93 -0.17 1.38 16 32 H 0.06 1.00 5.54 -51.93 -0.29 0.71 16 33 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 34 H 0.08 1.18 5.53 -51.93 -0.29 0.90 16 35 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 36 H 0.12 2.32 4.70 -51.94 -0.24 2.07 16 37 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 38 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 39 H 0.09 0.68 6.87 -51.93 -0.36 0.33 16 40 H 0.09 0.90 7.36 -51.93 -0.38 0.52 16 41 H 0.07 0.42 8.10 -51.93 -0.42 0.00 16 42 H 0.07 0.47 8.14 -51.93 -0.42 0.04 16 43 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 44 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 45 H 0.13 0.43 4.43 -51.93 -0.23 0.20 16 46 H 0.13 0.21 8.07 -51.93 -0.42 -0.21 16 47 H 0.07 0.44 5.66 -51.93 -0.29 0.15 16 48 H 0.08 0.64 8.14 -51.93 -0.42 0.22 16 49 H 0.07 1.04 7.01 -51.93 -0.36 0.68 16 50 H 0.07 1.18 7.08 -51.93 -0.37 0.81 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -37.03 382.99 -5.88 -42.92 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -7.58 Total: 3.41 kcal Atomic # 6 Polarization: 2.11 SS G_CDS: -0.89 Total: 1.22 kcal Atomic # 7 Polarization: -47.06 SS G_CDS: 0.88 Total: -46.18 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: 0.16 Total: -23.44 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.23 Total: 16.30 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -37.03 -5.88 -42.92 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124180943.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.762 kcal (2) G-P(sol) polarization free energy of solvation -37.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.884 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.916 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.154 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds