Wall clock time and date at job start Tue Mar 31 2020 19:49:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.46857 * 2 1 4 4 C 1.46497 * 120.00071 * 270.00017 * 3 2 1 5 5 C 1.50699 * 109.47074 * 270.00334 * 4 3 2 6 6 H 1.08006 * 120.00291 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99911 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46787 * 89.99838 * 9 7 5 11 11 H 1.48495 * 109.47246 * 209.99763 * 9 7 5 12 12 H 1.48495 * 109.47164 * 330.00210 * 9 7 5 13 13 C 1.34773 * 119.99750 * 90.00354 * 3 2 1 14 14 O 1.21277 * 120.00316 * 179.97438 * 13 3 2 15 15 C 1.50709 * 120.00024 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46728 * 186.10857 * 15 13 3 17 17 C 1.47014 * 111.00134 * 66.60654 * 16 15 13 18 18 C 1.53093 * 109.25917 * 182.39128 * 17 16 15 19 19 O 1.43017 * 109.29051 * 303.12594 * 18 17 16 20 20 C 1.43097 * 113.69140 * 58.64900 * 19 18 17 21 21 C 1.47012 * 110.99485 * 190.23557 * 16 15 13 22 22 H 1.09001 * 109.51337 * 297.54270 * 21 16 15 23 23 C 1.50704 * 109.50884 * 57.63099 * 21 16 15 24 24 C 1.34844 * 125.88777 * 34.48323 * 23 21 16 25 25 C 1.40892 * 107.41634 * 180.02562 * 24 23 21 26 26 C 1.34848 * 107.41629 * 359.97438 * 25 24 23 27 27 N 1.36340 * 125.88789 * 214.17519 * 23 21 16 28 28 C 1.46498 * 125.64049 * 359.97438 * 27 23 21 29 29 H 1.08998 * 109.47282 * 59.99712 * 1 2 3 30 30 H 1.09007 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47324 * 299.99845 * 1 2 3 32 32 H 1.09003 * 109.47324 * 240.00155 * 2 1 3 33 33 H 1.08998 * 109.47282 * 120.00288 * 2 1 3 34 34 H 1.08997 * 109.47148 * 29.99774 * 4 3 2 35 35 H 1.09000 * 109.47049 * 150.00309 * 4 3 2 36 36 H 0.97007 * 119.99655 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47381 * 66.10761 * 15 13 3 38 38 H 1.09001 * 109.46745 * 306.10343 * 15 13 3 39 39 H 1.08996 * 109.51331 * 62.45015 * 17 16 15 40 40 H 1.09005 * 109.50274 * 302.31878 * 17 16 15 41 41 H 1.08998 * 109.50840 * 63.07949 * 18 17 16 42 42 H 1.09001 * 109.51126 * 183.16698 * 18 17 16 43 43 H 1.09000 * 109.49337 * 181.41597 * 20 19 18 44 44 H 1.09003 * 109.53278 * 61.32213 * 20 19 18 45 45 H 1.08003 * 126.29607 * 359.97438 * 24 23 21 46 46 H 1.07997 * 126.28927 * 180.02562 * 25 24 23 47 47 H 1.08003 * 125.88934 * 180.02562 * 26 25 24 48 48 H 1.08996 * 109.46982 * 84.89781 * 28 27 23 49 49 H 1.08998 * 109.47264 * 204.90099 * 28 27 23 50 50 H 1.08996 * 109.46639 * 324.89749 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1492 2.3907 -2.8775 8 7 3.3491 3.1267 -3.6175 9 14 5.9136 2.0977 -3.4164 10 1 5.9774 0.8770 -4.2597 11 1 6.3926 3.2654 -4.1989 12 1 6.7735 1.9177 -2.2192 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9913 1.3062 2.4723 16 7 2.1684 2.2490 3.5849 17 6 1.1322 3.2916 3.5621 18 6 1.3889 4.2836 4.6996 19 8 1.4190 3.5786 5.9435 20 6 2.4175 2.5551 6.0004 21 6 2.1712 1.5457 4.8759 22 1 1.2075 1.0596 5.0278 23 6 3.2644 0.5083 4.8815 24 6 4.4629 0.6196 4.2735 25 6 5.1766 -0.5683 4.5275 26 6 4.3872 -1.3599 5.2816 27 7 3.2145 -0.7021 5.5070 28 6 2.0858 -1.2129 6.2890 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5816 1.6878 -2.0283 35 1 2.0954 3.1412 -1.1383 36 1 3.6752 3.5173 -4.4435 37 1 2.6961 0.4817 2.5791 38 1 0.9729 0.9177 2.4840 39 1 0.1519 2.8336 3.6929 40 1 1.1650 3.8164 2.6073 41 1 2.3455 4.7810 4.5399 42 1 0.5916 5.0266 4.7215 43 1 2.3637 2.0476 6.9635 44 1 3.4044 3.0017 5.8789 45 1 4.8113 1.4638 3.6969 46 1 6.1730 -0.8015 4.1825 47 1 4.6420 -2.3435 5.6478 48 1 1.3643 -1.6832 5.6209 49 1 2.4459 -1.9470 7.0098 50 1 1.6077 -0.3885 6.8180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000131904599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:16 Heat of formation + Delta-G solvation = -6.729162 kcal Electronic energy + Delta-G solvation = -30878.310401 eV Core-core repulsion = 26907.397963 eV Total energy + Delta-G solvation = -3970.912438 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.47357 -39.67762 -38.60703 -35.71820 -35.03800 -32.93412 -32.76188 -32.03768 -30.09091 -29.44034 -27.96594 -26.95505 -26.46381 -24.81427 -23.89787 -22.98594 -22.22630 -21.17226 -20.17020 -19.02708 -18.30814 -17.31964 -16.68305 -16.31831 -16.22002 -16.04203 -15.42516 -15.25749 -15.12122 -14.83318 -14.41084 -14.31533 -13.96278 -13.55315 -13.44395 -13.30656 -13.23855 -12.98874 -12.63140 -12.46224 -12.34863 -12.12695 -11.97458 -11.96288 -11.82768 -11.58055 -11.33924 -11.18076 -11.12217 -10.87928 -10.70609 -10.61267 -10.47558 -10.07816 -9.84201 -9.56765 -8.82874 -8.56107 -8.39001 -8.23855 -7.99101 -7.59091 -5.99854 -4.03857 2.15351 2.79332 3.09725 3.33737 3.40356 3.44334 3.51826 3.57253 3.77926 4.16580 4.49706 4.53803 4.61869 4.79921 4.89057 4.91861 4.98770 5.06816 5.13089 5.17872 5.23801 5.28371 5.33833 5.37060 5.45675 5.60979 5.62754 5.65870 5.71393 5.74198 5.77563 5.81674 5.95790 6.01143 6.03389 6.23583 6.33766 6.46955 6.49627 6.81927 6.94753 7.04461 7.10129 7.16422 7.29012 7.33794 7.48726 7.61563 7.97407 8.29003 8.48983 8.96499 9.18870 9.61327 11.08203 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.003738 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.178514 B = 7489.541634 C = 8152.042397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.108 3.892 3 N -0.599 5.599 4 C 0.249 3.751 5 C -0.523 4.523 6 H 0.057 0.943 7 C 0.061 3.939 8 N -0.896 5.896 9 Si 0.896 3.104 10 H -0.281 1.281 11 H -0.286 1.286 12 H -0.273 1.273 13 C 0.510 3.490 14 O -0.524 6.524 15 C 0.036 3.964 16 N -0.502 5.502 17 C 0.019 3.981 18 C 0.065 3.935 19 O -0.388 6.388 20 C 0.077 3.923 21 C 0.127 3.873 22 H 0.047 0.953 23 C 0.006 3.994 24 C -0.158 4.158 25 C -0.201 4.201 26 C -0.016 4.016 27 N -0.450 5.450 28 C 0.072 3.928 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.047 0.953 32 H 0.082 0.918 33 H 0.061 0.939 34 H 0.030 0.970 35 H 0.042 0.958 36 H 0.262 0.738 37 H 0.107 0.893 38 H 0.050 0.950 39 H 0.035 0.965 40 H 0.109 0.891 41 H 0.066 0.934 42 H 0.098 0.902 43 H 0.091 0.909 44 H 0.067 0.933 45 H 0.143 0.857 46 H 0.135 0.865 47 H 0.160 0.840 48 H 0.069 0.931 49 H 0.083 0.917 50 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.018 -9.304 20.482 23.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.017 4.017 3 N -0.332 5.332 4 C 0.129 3.871 5 C -0.562 4.562 6 H 0.076 0.924 7 C -0.141 4.141 8 N -0.536 5.536 9 Si 0.724 3.276 10 H -0.207 1.207 11 H -0.211 1.211 12 H -0.198 1.198 13 C 0.295 3.705 14 O -0.400 6.400 15 C -0.095 4.095 16 N -0.227 5.227 17 C -0.109 4.109 18 C -0.012 4.012 19 O -0.307 6.307 20 C 0.000 4.000 21 C 0.017 3.983 22 H 0.065 0.935 23 C -0.104 4.104 24 C -0.183 4.183 25 C -0.225 4.225 26 C -0.145 4.145 27 N -0.128 5.128 28 C -0.070 4.070 29 H 0.081 0.919 30 H 0.077 0.923 31 H 0.066 0.934 32 H 0.101 0.899 33 H 0.079 0.921 34 H 0.048 0.952 35 H 0.060 0.940 36 H 0.072 0.928 37 H 0.125 0.875 38 H 0.068 0.932 39 H 0.053 0.947 40 H 0.127 0.873 41 H 0.084 0.916 42 H 0.116 0.884 43 H 0.109 0.891 44 H 0.086 0.914 45 H 0.160 0.840 46 H 0.153 0.847 47 H 0.177 0.823 48 H 0.088 0.912 49 H 0.102 0.898 50 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -5.778 -8.423 20.592 22.986 hybrid contribution 0.342 -0.967 -0.655 1.217 sum -5.436 -9.390 19.937 22.698 Atomic orbital electron populations 1.22221 0.97005 1.01274 1.02148 1.21374 0.93287 0.84483 1.02549 1.48246 1.64099 1.13145 1.07698 1.19233 0.96217 0.93540 0.78066 1.21451 0.96930 1.31664 1.06124 0.92447 1.24923 0.97776 0.94939 0.96433 1.69936 1.35678 1.33610 1.14347 0.86517 0.84861 0.77592 0.78605 1.20726 1.21141 1.19807 1.20053 0.78790 0.87062 0.84578 1.90641 1.44717 1.17820 1.86821 1.22161 1.01061 0.95834 0.90447 1.61702 1.48332 1.12560 1.00137 1.22937 0.91752 0.94090 1.02114 1.22703 1.02732 0.93601 0.82183 1.87968 1.56870 1.49849 1.35965 1.22630 0.92608 0.88065 0.96715 1.20523 0.94279 0.91978 0.91528 0.93488 1.19802 0.98281 0.87839 1.04474 1.20854 0.93490 0.99787 1.04202 1.20975 1.00732 0.95761 1.05068 1.21745 0.86876 0.99384 1.06492 1.43831 1.13860 1.14037 1.41033 1.21972 0.88560 1.00649 0.95838 0.91945 0.92288 0.93404 0.89928 0.92076 0.95198 0.93967 0.92811 0.87547 0.93186 0.94723 0.87316 0.91588 0.88379 0.89064 0.91443 0.83954 0.84712 0.82308 0.91197 0.89783 0.90257 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.30 10.18 37.16 0.38 -1.92 16 2 C 0.11 1.77 5.85 -4.04 -0.02 1.75 16 3 N -0.60 -12.74 2.46 -175.06 -0.43 -13.17 16 4 C 0.25 6.52 5.16 -5.20 -0.03 6.49 16 5 C -0.52 -14.97 9.39 -34.44 -0.32 -15.29 16 6 H 0.06 1.66 7.81 -52.48 -0.41 1.25 16 7 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 8 N -0.90 -26.83 13.29 55.43 0.74 -26.10 16 9 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 12 H -0.27 -6.78 7.11 56.52 0.40 -6.37 16 13 C 0.51 10.67 7.25 -10.98 -0.08 10.59 16 14 O -0.52 -13.04 14.27 5.56 0.08 -12.96 16 15 C 0.04 0.57 3.59 -4.97 -0.02 0.56 16 16 N -0.50 -7.64 3.93 -229.15 -0.90 -8.55 16 17 C 0.02 0.27 5.30 -3.71 -0.02 0.25 16 18 C 0.06 0.82 7.01 37.21 0.26 1.08 16 19 O -0.39 -5.01 10.83 -35.23 -0.38 -5.39 16 20 C 0.08 0.91 6.28 37.21 0.23 1.15 16 21 C 0.13 1.59 2.07 -68.75 -0.14 1.45 16 22 H 0.05 0.56 7.62 -51.93 -0.40 0.17 16 23 C 0.01 0.08 4.74 -81.79 -0.39 -0.31 16 24 C -0.16 -2.31 9.12 -39.78 -0.36 -2.67 16 25 C -0.20 -2.57 10.86 -39.78 -0.43 -3.00 16 26 C -0.02 -0.16 11.42 -16.75 -0.19 -0.36 16 27 N -0.45 -4.71 3.15 -119.90 -0.38 -5.08 16 28 C 0.07 0.47 10.62 59.85 0.64 1.11 16 29 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.05 0.63 7.12 -51.93 -0.37 0.26 16 32 H 0.08 1.41 8.07 -51.93 -0.42 0.99 16 33 H 0.06 0.88 6.61 -51.93 -0.34 0.54 16 34 H 0.03 0.79 8.07 -51.93 -0.42 0.38 16 35 H 0.04 1.25 7.42 -51.93 -0.39 0.86 16 36 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 37 H 0.11 1.73 5.47 -51.93 -0.28 1.45 16 38 H 0.05 0.72 6.83 -51.93 -0.35 0.37 16 39 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 40 H 0.11 1.86 6.12 -51.93 -0.32 1.54 16 41 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 42 H 0.10 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 44 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.14 2.38 8.06 -52.48 -0.42 1.96 16 46 H 0.14 1.58 8.06 -52.49 -0.42 1.15 16 47 H 0.16 1.20 8.06 -52.48 -0.42 0.78 16 48 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 49 H 0.08 0.38 8.12 -51.93 -0.42 -0.05 16 50 H 0.08 0.47 7.79 -51.93 -0.40 0.06 16 LS Contribution 397.76 15.07 5.99 5.99 Total: -1.00 -34.12 397.76 -9.21 -43.33 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: -8.31 Total: 2.22 kcal Atomic # 6 Polarization: 3.13 SS G_CDS: -0.60 Total: 2.54 kcal Atomic # 7 Polarization: -51.93 SS G_CDS: -0.97 Total: -52.90 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.30 Total: -18.35 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 5.99 Total: 5.99 kcal Total: -34.12 -9.21 -43.33 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131904599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.602 kcal (2) G-P(sol) polarization free energy of solvation -34.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.210 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.331 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds