Wall clock time and date at job start Tue Mar 31 2020 19:49:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46509 * 109.46857 * 2 1 4 4 C 1.46497 * 120.00071 * 270.00017 * 3 2 1 5 5 C 1.50699 * 109.47074 * 270.00334 * 4 3 2 6 6 H 1.08006 * 120.00291 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99911 * 180.02562 * 5 4 3 8 8 N 1.31513 * 119.99613 * 359.97438 * 7 5 4 9 9 Si 1.86800 * 119.99944 * 179.97438 * 7 5 4 10 10 H 1.48504 * 109.46787 * 89.99838 * 9 7 5 11 11 H 1.48495 * 109.47246 * 209.99763 * 9 7 5 12 12 H 1.48495 * 109.47164 * 330.00210 * 9 7 5 13 13 C 1.34773 * 119.99750 * 90.00354 * 3 2 1 14 14 O 1.21277 * 120.00316 * 179.97438 * 13 3 2 15 15 C 1.50709 * 120.00024 * 359.97438 * 13 3 2 16 16 N 1.46903 * 109.46728 * 186.10857 * 15 13 3 17 17 C 1.47014 * 111.00134 * 66.60654 * 16 15 13 18 18 C 1.53093 * 109.25917 * 182.39128 * 17 16 15 19 19 O 1.43017 * 109.29051 * 303.12594 * 18 17 16 20 20 C 1.43097 * 113.69140 * 58.64900 * 19 18 17 21 21 C 1.47012 * 110.99485 * 190.23557 * 16 15 13 22 22 H 1.09001 * 109.51337 * 297.54270 * 21 16 15 23 23 C 1.50704 * 109.50884 * 57.63099 * 21 16 15 24 24 C 1.34844 * 125.88777 * 34.48323 * 23 21 16 25 25 C 1.40892 * 107.41634 * 180.02562 * 24 23 21 26 26 C 1.34848 * 107.41629 * 359.97438 * 25 24 23 27 27 N 1.36340 * 125.88789 * 214.17519 * 23 21 16 28 28 C 1.46498 * 125.64049 * 359.97438 * 27 23 21 29 29 H 1.08998 * 109.47282 * 59.99712 * 1 2 3 30 30 H 1.09007 * 109.47009 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.47324 * 299.99845 * 1 2 3 32 32 H 1.09003 * 109.47324 * 240.00155 * 2 1 3 33 33 H 1.08998 * 109.47282 * 120.00288 * 2 1 3 34 34 H 1.08997 * 109.47148 * 29.99774 * 4 3 2 35 35 H 1.09000 * 109.47049 * 150.00309 * 4 3 2 36 36 H 0.97007 * 119.99655 * 180.02562 * 8 7 5 37 37 H 1.08998 * 109.47381 * 66.10761 * 15 13 3 38 38 H 1.09001 * 109.46745 * 306.10343 * 15 13 3 39 39 H 1.08996 * 109.51331 * 62.45015 * 17 16 15 40 40 H 1.09005 * 109.50274 * 302.31878 * 17 16 15 41 41 H 1.08998 * 109.50840 * 63.07949 * 18 17 16 42 42 H 1.09001 * 109.51126 * 183.16698 * 18 17 16 43 43 H 1.09000 * 109.49337 * 181.41597 * 20 19 18 44 44 H 1.09003 * 109.53278 * 61.32213 * 20 19 18 45 45 H 1.08003 * 126.29607 * 359.97438 * 24 23 21 46 46 H 1.07997 * 126.28927 * 180.02562 * 25 24 23 47 47 H 1.08003 * 125.88934 * 180.02562 * 26 25 24 48 48 H 1.08996 * 109.46982 * 84.89781 * 28 27 23 49 49 H 1.08998 * 109.47264 * 204.90099 * 28 27 23 50 50 H 1.08996 * 109.46639 * 324.89749 * 28 27 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3813 0.0000 4 6 2.2624 2.0719 -1.2687 5 6 3.6856 1.8351 -1.7037 6 1 4.3428 1.2310 -1.0958 7 6 4.1492 2.3907 -2.8775 8 7 3.3491 3.1267 -3.6175 9 14 5.9136 2.0977 -3.4164 10 1 5.9774 0.8770 -4.2597 11 1 6.3926 3.2654 -4.1989 12 1 6.7735 1.9177 -2.2192 13 6 2.2429 2.0166 1.1672 14 8 2.6475 3.1599 1.1673 15 6 1.9913 1.3062 2.4723 16 7 2.1684 2.2490 3.5849 17 6 1.1322 3.2916 3.5621 18 6 1.3889 4.2836 4.6996 19 8 1.4190 3.5786 5.9435 20 6 2.4175 2.5551 6.0004 21 6 2.1712 1.5457 4.8759 22 1 1.2075 1.0596 5.0278 23 6 3.2644 0.5083 4.8815 24 6 4.4629 0.6196 4.2735 25 6 5.1766 -0.5683 4.5275 26 6 4.3872 -1.3599 5.2816 27 7 3.2145 -0.7021 5.5070 28 6 2.0858 -1.2129 6.2890 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5138 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.5816 1.6878 -2.0283 35 1 2.0954 3.1412 -1.1383 36 1 3.6752 3.5173 -4.4435 37 1 2.6961 0.4817 2.5791 38 1 0.9729 0.9177 2.4840 39 1 0.1519 2.8336 3.6929 40 1 1.1650 3.8164 2.6073 41 1 2.3455 4.7810 4.5399 42 1 0.5916 5.0266 4.7215 43 1 2.3637 2.0476 6.9635 44 1 3.4044 3.0017 5.8789 45 1 4.8113 1.4638 3.6969 46 1 6.1730 -0.8015 4.1825 47 1 4.6420 -2.3435 5.6478 48 1 1.3643 -1.6832 5.6209 49 1 2.4459 -1.9470 7.0098 50 1 1.6077 -0.3885 6.8180 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000131904599.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 19:49:15 Heat of formation + Delta-G solvation = -29.565927 kcal Electronic energy + Delta-G solvation = -30879.300677 eV Core-core repulsion = 26907.397963 eV Total energy + Delta-G solvation = -3971.902714 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 335.200 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -42.39964 -40.99174 -39.96718 -37.11010 -36.51694 -34.90075 -33.68709 -33.06947 -31.68879 -30.75545 -29.13453 -28.57309 -27.11575 -26.28556 -24.93877 -24.61415 -23.84730 -22.20568 -21.08613 -20.03713 -19.85632 -18.63307 -18.29436 -17.88585 -17.45020 -17.22266 -16.90137 -16.52427 -16.16390 -16.01705 -15.79309 -15.63228 -15.24648 -14.79733 -14.70567 -14.49872 -14.29338 -14.17004 -14.06264 -13.61350 -13.53981 -13.26666 -13.25489 -13.09622 -13.01153 -12.84583 -12.83619 -12.68802 -12.51405 -12.39059 -12.31466 -12.17739 -11.93451 -11.71747 -11.63116 -10.93656 -10.63790 -10.46198 -9.48345 -9.44876 -9.34010 -8.91640 -8.22219 -6.36411 1.26283 1.34926 1.38292 1.48798 1.85030 1.96874 2.11097 2.22898 2.40109 2.75587 2.89581 3.07153 3.60217 3.67948 3.85252 3.94193 3.98190 4.07723 4.09360 4.11314 4.25460 4.28499 4.36946 4.38751 4.46636 4.48077 4.57838 4.63968 4.66938 4.76659 4.79535 4.80800 4.83516 4.90210 4.94224 4.95915 5.03728 5.20903 5.33494 5.41451 5.45313 5.58204 5.73193 5.86761 5.88797 6.04421 6.07869 6.10310 6.34462 6.55770 6.71113 6.81650 7.29499 7.52807 8.84648 Molecular weight = 335.20amu Principal moments of inertia in cm(-1) A = 0.011557 B = 0.003738 C = 0.003434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2422.178514 B = 7489.541634 C = 8152.042397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.101 3.899 3 N -0.605 5.605 4 C 0.266 3.734 5 C -0.541 4.541 6 H 0.048 0.952 7 C 0.010 3.990 8 N -0.928 5.928 9 Si 0.964 3.036 10 H -0.262 1.262 11 H -0.279 1.279 12 H -0.276 1.276 13 C 0.501 3.499 14 O -0.575 6.575 15 C 0.059 3.941 16 N -0.526 5.526 17 C 0.022 3.978 18 C 0.070 3.930 19 O -0.388 6.388 20 C 0.078 3.922 21 C 0.134 3.866 22 H 0.067 0.933 23 C 0.007 3.993 24 C -0.192 4.192 25 C -0.231 4.231 26 C 0.004 3.996 27 N -0.444 5.444 28 C 0.062 3.938 29 H 0.042 0.958 30 H 0.095 0.905 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.088 0.912 34 H 0.022 0.978 35 H -0.003 1.003 36 H 0.267 0.733 37 H 0.108 0.892 38 H 0.078 0.922 39 H 0.052 0.948 40 H 0.075 0.925 41 H 0.049 0.951 42 H 0.122 0.878 43 H 0.120 0.880 44 H 0.050 0.950 45 H 0.104 0.896 46 H 0.134 0.866 47 H 0.197 0.803 48 H 0.081 0.919 49 H 0.110 0.890 50 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.955 -12.361 22.894 26.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.021 4.021 3 N -0.337 5.337 4 C 0.145 3.855 5 C -0.579 4.579 6 H 0.067 0.933 7 C -0.189 4.189 8 N -0.567 5.567 9 Si 0.789 3.211 10 H -0.187 1.187 11 H -0.205 1.205 12 H -0.201 1.201 13 C 0.289 3.711 14 O -0.454 6.454 15 C -0.072 4.072 16 N -0.252 5.252 17 C -0.105 4.105 18 C -0.007 4.007 19 O -0.306 6.306 20 C 0.001 3.999 21 C 0.025 3.975 22 H 0.084 0.916 23 C -0.105 4.105 24 C -0.217 4.217 25 C -0.255 4.255 26 C -0.126 4.126 27 N -0.120 5.120 28 C -0.078 4.078 29 H 0.061 0.939 30 H 0.114 0.886 31 H 0.075 0.925 32 H 0.091 0.909 33 H 0.106 0.894 34 H 0.040 0.960 35 H 0.015 0.985 36 H 0.076 0.924 37 H 0.126 0.874 38 H 0.095 0.905 39 H 0.070 0.930 40 H 0.093 0.907 41 H 0.067 0.933 42 H 0.140 0.860 43 H 0.138 0.862 44 H 0.068 0.932 45 H 0.122 0.878 46 H 0.152 0.848 47 H 0.214 0.786 48 H 0.100 0.900 49 H 0.129 0.871 50 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -6.754 -11.532 23.031 26.628 hybrid contribution 0.630 -0.022 -1.370 1.508 sum -6.124 -11.554 21.661 25.303 Atomic orbital electron populations 1.22134 0.94374 1.03491 1.01619 1.21676 0.95396 0.81628 1.03412 1.48268 1.64254 1.14955 1.06248 1.18657 0.95126 0.91474 0.80255 1.21689 0.97928 1.31883 1.06436 0.93332 1.25807 1.02216 0.94450 0.96411 1.70047 1.37688 1.34222 1.14784 0.85464 0.79224 0.78292 0.78140 1.18677 1.20479 1.20105 1.20980 0.77461 0.86663 0.85981 1.90612 1.46852 1.20247 1.87687 1.21899 1.02355 0.95055 0.87850 1.61594 1.49251 1.13140 1.01176 1.22840 0.92397 0.94187 1.01105 1.22682 1.02781 0.93507 0.81755 1.87970 1.57001 1.50068 1.35592 1.22728 0.91598 0.87786 0.97825 1.20523 0.95047 0.91990 0.89929 0.91551 1.19650 0.97432 0.88892 1.04544 1.20671 0.95377 0.99824 1.05832 1.21107 1.01503 0.95964 1.06970 1.22224 0.86058 0.99973 1.04376 1.44074 1.14762 1.12878 1.40245 1.22335 0.87526 1.01705 0.96225 0.93903 0.88586 0.92526 0.90891 0.89361 0.96032 0.98474 0.92420 0.87384 0.90473 0.92970 0.90682 0.93267 0.86031 0.86176 0.93170 0.87780 0.84771 0.78623 0.90045 0.87098 0.89286 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.02 10.18 71.98 0.73 -3.29 16 2 C 0.10 3.27 5.85 86.38 0.51 3.77 16 3 N -0.61 -26.64 2.46 -826.15 -2.03 -28.67 16 4 C 0.27 14.77 5.16 85.63 0.44 15.21 16 5 C -0.54 -32.23 9.39 25.60 0.24 -31.99 16 6 H 0.05 2.91 7.81 -2.91 -0.02 2.89 16 7 C 0.01 0.60 5.46 84.66 0.46 1.06 16 8 N -0.93 -57.18 13.29 21.45 0.28 -56.89 16 9 Si 0.96 46.33 29.54 68.60 2.03 48.36 16 10 H -0.26 -11.74 7.11 99.48 0.71 -11.03 16 11 H -0.28 -13.08 7.11 99.48 0.71 -12.37 16 12 H -0.28 -13.29 7.11 99.48 0.71 -12.58 16 13 C 0.50 21.85 7.25 87.66 0.64 22.48 16 14 O -0.57 -30.63 14.27 -3.02 -0.04 -30.67 16 15 C 0.06 1.87 3.59 85.56 0.31 2.18 16 16 N -0.53 -16.02 3.93 -878.91 -3.46 -19.47 16 17 C 0.02 0.65 5.30 86.31 0.46 1.11 16 18 C 0.07 1.75 7.01 72.01 0.50 2.25 16 19 O -0.39 -9.34 10.83 -148.98 -1.61 -10.96 16 20 C 0.08 1.72 6.28 72.02 0.45 2.17 16 21 C 0.13 3.13 2.07 44.18 0.09 3.22 16 22 H 0.07 1.32 7.62 -2.39 -0.02 1.31 16 23 C 0.01 0.16 4.74 41.08 0.19 0.35 16 24 C -0.19 -5.73 9.12 22.14 0.20 -5.52 16 25 C -0.23 -5.81 10.86 22.14 0.24 -5.57 16 26 C 0.00 0.08 11.42 83.21 0.95 1.03 16 27 N -0.44 -7.75 3.15 -533.26 -1.68 -9.43 16 28 C 0.06 0.51 10.62 127.77 1.36 1.87 16 29 H 0.04 1.25 8.14 -2.39 -0.02 1.24 16 30 H 0.10 1.76 8.14 -2.38 -0.02 1.74 16 31 H 0.06 1.34 7.12 -2.39 -0.02 1.32 16 32 H 0.07 2.48 8.07 -2.39 -0.02 2.47 16 33 H 0.09 2.37 6.61 -2.39 -0.02 2.35 16 34 H 0.02 1.21 8.07 -2.39 -0.02 1.20 16 35 H 0.00 -0.18 7.42 -2.39 -0.02 -0.20 16 36 H 0.27 15.40 8.31 -92.70 -0.77 14.63 16 37 H 0.11 3.44 5.47 -2.39 -0.01 3.43 16 38 H 0.08 2.02 6.83 -2.39 -0.02 2.01 16 39 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 40 H 0.07 2.71 6.12 -2.38 -0.01 2.70 16 41 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 42 H 0.12 2.44 8.14 -2.39 -0.02 2.42 16 43 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 44 H 0.05 1.28 8.14 -2.39 -0.02 1.27 16 45 H 0.10 3.84 8.06 -2.91 -0.02 3.81 16 46 H 0.13 3.20 8.06 -2.91 -0.02 3.18 16 47 H 0.20 2.03 8.06 -2.91 -0.02 2.00 16 48 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 49 H 0.11 0.36 8.12 -2.39 -0.02 0.34 16 50 H 0.09 0.60 7.79 -2.39 -0.02 0.58 16 Total: -1.00 -79.75 397.76 2.18 -77.57 By element: Atomic # 1 Polarization: 18.92 SS G_CDS: 0.91 Total: 19.83 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: 7.77 Total: 10.33 kcal Atomic # 7 Polarization: -107.59 SS G_CDS: -6.88 Total: -114.47 kcal Atomic # 8 Polarization: -39.97 SS G_CDS: -1.66 Total: -41.63 kcal Atomic # 14 Polarization: 46.33 SS G_CDS: 2.03 Total: 48.36 kcal Total: -79.75 2.18 -77.57 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000131904599.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.008 kcal (2) G-P(sol) polarization free energy of solvation -79.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.743 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.177 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds